This run was generated using rMAP version 1.0 performed on 2023-03-21… Thank you for using this pipeline!!


Assembly summary statistics


Field Description
SampleID Name of the sample
MeanReadLen Average read length after quality filtering
Contigs Number of contigs of the draft genome (>200bp)
GenomeLength Length (bp) of the draft genome
LargestContig Length (bp) of the largest contig in the genome
N50 Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly
GC-Content GC content (%) of the draft genome


## Warning: package 'readxl' was built under R version 4.1.3
SampleID MeanReadLen Contigs GenomeLength LargestContig N50 GC-Content
15_pio 35198.82 196 6898969 243383 109745 66.13
120_pio 24884.34 275 6843193 213923 58397 66.07
123_pio 24348.56 280 6817596 248561 55421 66.08
129_pio 25073.63 272 6820027 184413 68268 66.07
159_pio 21514.52 317 6820103 198706 49104 66.09
165_pio 23058.96 296 6825451 217990 64492 66.08
166_pio 23709.31 287 6804572 196873 58275 66.10
168_pio 24145.57 282 6809052 172016 57016 66.08

Select the parameter

Average read length

Average read length per sample = NA bp

Number of contigs

Average number of contigs per sample = 275.625

Genome length

Average genome length per sample = 6.8298704^{6} bp

Largest contig length

Average largest contig length per sample = 2.0948312^{5} bp

N50

Average N50 per sample = 6.508975^{4} bp

GC content

Average GC content per sample = NA%

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Phylogenetic inference

Phylogeny inference was not performed.


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Antimicrobial Resistance Profiling


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Gaps Gaps in subject (genome) and query (antibiotic resistance gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product
Resistance Antibiotic that the gene confers resistance to


Select the samples and the database

15_pio
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_1 48292 49137 aadA6_1 0/0 100 100.0 AF140629 aadA6 Streptomycin
k141_44 102060 102866 aph(3’)-IIb_1 0/0 100 98.8 X90856 aph(3’)-IIb
k141_148 33844 34632 blaOXA-488_1 0/0 100 99.9 CP017969 blaOXA-488
k141_44 88511 89704 blaPAO_2 0/0 100 99.2 FJ666065 blaPAO
k141_197 93798 94436 catB7_1 0/0 100 98.8 AF036933 catB7 Chloramphenicol
k141_175 25374 25781 fosA_4 0/0 100 99.0 ACWU01000146 fosA Fosfomycin
k141_1 46675 47541 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_1 48292 49137 aadA6 0/0 100.0 100.0 AM087411:1611-2457 aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa aminoglycoside
k141_44 102060 102866 APH(3’)-IIb 0/0 100.0 98.8 X90856:387-1194 APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa aminoglycoside
k141_163 50946 51107 ArmR 0/0 100.0 96.9 AE004091.2:4165880-4165718 ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_151 100201 102189 arnA 0/0 100.0 99.5 AE004091.2:3982020-3984009 arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. peptide
k141_113 88356 89789 basS 0/0 100.0 98.7 JQ340365:0-1434 Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) peptide
k141_44 119571 120779 bcr-1 0/0 100.0 99.4 CP012901.1:5980365-5979156 Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene bicyclomycin
k141_175 25374 25781 fosA 0/0 100.0 99.5 AE004091.2:1221690-1222098 An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. fosfomycin
k141_74 88185 91325 MexB 0/0 100.0 99.3 L11616:1569-4710 MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_72 151295 152458 MexC 0/0 100.0 99.4 U57969:294-1458 MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_72 148136 151267 MexD 2/2 100.0 99.3 U57969:1485-4617 MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_153 28340 29584 MexE 0/0 100.0 99.4 AE004091.2:2808742-2809987 MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_153 29606 32794 MexF 0/0 100.0 99.7 AE004091.2:2810008-2813197 MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). diaminopyrimidine, fluoroquinolone, phenicol
k141_78 7748 8194 mexG 0/0 100.0 99.8 AE004091.2:4705955-4706402 MexG is a membrane protein required for MexGHI-OpmD efflux activity. acridine_dye, fluoroquinolone, tetracycline
k141_78 6628 7740 mexH 0/0 100.0 99.5 AE004091.2:4706409-4707522 MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_78 3526 6615 mexI 0/0 100.0 99.6 AE004091.2:4707534-4710624 MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_163 4496 5599 mexJ 0/0 100.0 99.0 AE004091.2:4120373-4119269 mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_163 1414 4491 mexK 0/0 100.0 99.5 AE004091.2:4119265-4116187 mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_163 5695 6333 mexL 0/0 100.0 99.8 AE004091.2:4120468-4121107 MexL is a specific repressor of mexJK transcription and autoregulates its own expression. macrolide, tetracycline, triclosan
k141_111 60602 61759 mexM 0/0 100.0 99.4 AB219523.1:21-1179 mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. phenicol
k141_111 57495 60605 mexN 0/0 100.0 99.2 AB219523.1:1175-4286 MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. phenicol
k141_151 140409 141566 mexP 0/0 100.0 98.8 AB219524.1:22-1180 MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_151 141563 144724 mexQ 0/0 100.0 99.2 AB219524.1:1176-4338 MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_109 103349 104479 mexV 0/0 100.0 98.7 AE004091.2:4903465-4904596 MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_109 104530 107586 mexW 0/0 100.0 99.5 NC_002516.2:4904646-4907703 MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_140 56016 57195 mexX 7/10 100.0 98.0 AB015853:145-1315 MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_140 57211 60348 mexY 8/9 99.8 98.6 AB015853:1330-4471 MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_153 73613 74893 MuxA 0/0 100.0 99.3 AE004091.2:2855291-2854010 MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_153 70485 73616 MuxB 0/0 100.0 99.5 AE004091.2:2854014-2850882 MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_153 67378 70488 MuxC 0/0 100.0 99.1 AE004091.2:2850886-2847775 MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_153 65885 67381 OpmB 0/0 100.0 99.3 AE004091.2:2847779-2846282 OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_78 2066 3529 opmD 0/0 100.0 99.0 AE004091.2:4710620-4712084 OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_151 144721 146196 opmE 0/0 100.0 99.2 AB219524.1:4334-5810 opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_107 145 1593 OpmH 0/0 100.0 99.2 AE004091.2:5584100-5585549 OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. triclosan
k141_72 146691 148130 OprJ 0/0 100.0 99.0 U57969:4622-6062 OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_74 91327 92784 OprM 0/0 100.0 98.8 AE004091.2:476332-477790 OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_153 32791 34209 OprN 0/0 100.0 99.3 AE004091.2:2813193-2814612 OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_148 33844 34632 OXA-488 0/0 100.0 100.0 SMRY02000082.1:18008-17219 Assigned by Lahey’s list of beta-lactamases no accessions or other information available cephalosporin, penam
k141_44 88511 89704 PDC-2 0/0 100.0 99.6 FJ666064:0-1194 PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. carbapenem, cephalosporin, monobactam
k141_59 6091 7524 PmpM 0/0 100.0 99.6 AE004091.2:1473980-1472546 PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. aminoglycoside, benzalkonium_chloride, fluoroquinolone
k141_197 93798 94436 Pseudomonas_aeruginosa_catB7 0/0 100.0 98.8 NC_002516.2:780101-779462 catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa phenicol
k141_88 8283 8960 Pseudomonas_aeruginosa_CpxR 0/0 100.0 99.6 LT673656.1:1885022-1884344 CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_102 16362 16694 Pseudomonas_aeruginosa_emrE 0/0 100.0 98.8 AE004091.2:5606102-5606435 EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. aminoglycoside
k141_99 17494 17964 Pseudomonas_aeruginosa_soxR 0/0 100.0 99.4 AE004091.2:2503895-2503424 SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
k141_1 46675 47514 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
k141_105 48080 49231 TriA 0/0 100.0 99.1 AE004091.2:177306-178458 TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_105 47013 48083 TriB 0/0 100.0 99.3 AE004091.2:178454-179525 TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_105 43969 47016 TriC 0/0 100.0 99.3 AE004091.2:179521-182569 TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_1 48292 49137 (AGly)aadA6 0/0 100 100.0 AF140629:61-906 (AGly)aadA6 NA
k141_44 102060 102866 (AGly)aph(3’’)-IIb 0/0 100 98.8 X90856:388-1194 (AGly)aph(3’’)-IIb NA
k141_148 33844 34632 (Bla)blaOXA-50 0/0 100 98.5 AM117128:1-789 (Bla)blaOXA-50 NA
k141_44 88511 89704 (Bla)blaPDC-195 0/0 100 99.2 MF098287:1-1194 (Bla)blaPDC-195 NA
k141_44 119571 120779 (Phe)bcr1 0/0 100 99.4 NG_055652:101-1309 (Phe)bcr1 NA
k141_197 93798 94436 (Phe)catB7 0/0 100 98.8 AF036933:177-815 (Phe)catB7 NA
k141_1 46675 47514 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_1 48292 49137 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_44 102060 102866 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_148 33844 34632 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_44 88511 89733 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_197 93798 94436 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_175 25374 25781 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_1 46675 47514 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_1 48292 49137 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_44 102060 102866 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_148 33844 34632 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_44 88511 89733 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_197 93798 94436 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_175 25374 25781 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_1 46675 47514 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
120_pio
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_277 1976 2764 aadA5_1 0/0 100 99.6 AF137361 aadA5 Streptomycin
k141_62 1402 2247 aadA6_1 0/0 100 100.0 AF140629 aadA6 Streptomycin
k141_277 1385 1918 ant(2’’)-Ia_13 0/0 100 99.8 DQ176450 ant(2’’)-Ia Gentamicin, Tobramycin
k141_239 35612 36418 aph(3’)-IIb_1 0/0 100 98.8 X90856 aph(3’)-IIb
k141_177 4766 5545 aph(3’)-VIa_1 0/0 100 98.5 X07753 aph(3’)-VIa Amikacin
k141_277 3202 4029 blaOXA-2_1 0/0 100 100.0 DQ112222 blaOXA-2 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin
k141_256 112417 113205 blaOXA-488_1 0/0 100 99.9 CP017969 blaOXA-488
k141_239 48863 50056 blaPAO_2 0/0 100 99.2 FJ666065 blaPAO
k141_277 447 1307 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
k141_200 19447 20085 catB7_1 0/0 100 98.8 AF036933 catB7 Chloramphenicol
k141_22 8616 8813 crpP_1 0/0 100 98.0 HM560971 crpP Ciprofloxacin
k141_240 180 587 fosA_4 0/0 100 99.0 ACWU01000146 fosA Fosfomycin
k141_130 745 1611 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_277 1976 2764 aadA5 0/0 100.0 99.6 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
k141_62 1402 2247 aadA6 0/0 100.0 100.0 AM087411:1611-2457 aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa aminoglycoside
k141_277 1385 1918 ANT(2’’)-Ia 0/0 100.0 99.2 AF078527:3769-4303 Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii aminoglycoside
k141_239 35612 36418 APH(3’)-IIb 0/0 100.0 98.8 X90856:387-1194 APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa aminoglycoside
k141_177 4766 5545 APH(3’)-VIa 0/0 100.0 98.5 X07753:102-882 APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii aminoglycoside
k141_231 38922 39083 ArmR 0/0 100.0 96.9 AE004091.2:4165880-4165718 ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_178 20114 22102 arnA 0/0 100.0 99.5 AE004091.2:3982020-3984009 arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. peptide
k141_36 67704 69137 basS 0/0 100.0 98.7 JQ340365:0-1434 Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) peptide
k141_239 17699 18907 bcr-1 0/0 100.0 99.4 CP012901.1:5980365-5979156 Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene bicyclomycin
k141_22 8616 8813 CrpP 0/0 100.0 98.0 HM560971.1:119269-119071 A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. fluoroquinolone
k141_240 180 587 fosA 0/0 100.0 99.5 AE004091.2:1221690-1222098 An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. fosfomycin
k141_175 43293 44444 MexA 0/0 100.0 99.3 AE004091.2:472023-473175 MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_175 44460 47600 MexB 0/0 100.0 99.3 L11616:1569-4710 MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_196 8181 9344 MexC 0/0 100.0 99.4 U57969:294-1458 MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_196 9372 12503 MexD 2/2 100.0 99.3 U57969:1485-4617 MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_237 184340 185584 MexE 0/0 100.0 99.4 AE004091.2:2808742-2809987 MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_237 181130 184318 MexF 0/0 100.0 99.7 AE004091.2:2810008-2813197 MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). diaminopyrimidine, fluoroquinolone, phenicol
k141_42 7748 8194 mexG 0/0 100.0 99.8 AE004091.2:4705955-4706402 MexG is a membrane protein required for MexGHI-OpmD efflux activity. acridine_dye, fluoroquinolone, tetracycline
k141_42 6628 7740 mexH 0/0 100.0 99.5 AE004091.2:4706409-4707522 MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_42 3526 6615 mexI 0/0 100.0 99.6 AE004091.2:4707534-4710624 MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_178 157726 158829 mexJ 0/0 100.0 99.0 AE004091.2:4120373-4119269 mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_178 154644 157721 mexK 0/0 100.0 99.5 AE004091.2:4119265-4116187 mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_178 158925 159563 mexL 0/0 100.0 99.8 AE004091.2:4120468-4121107 MexL is a specific repressor of mexJK transcription and autoregulates its own expression. macrolide, tetracycline, triclosan
k141_209 8006 9163 mexM 0/0 100.0 99.4 AB219523.1:21-1179 mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. phenicol
k141_209 9160 12270 mexN 0/0 100.0 99.2 AB219523.1:1175-4286 MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. phenicol
k141_185 25965 27122 mexP 0/0 100.0 98.8 AB219524.1:22-1180 MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_185 22807 25968 mexQ 0/0 100.0 99.2 AB219524.1:1176-4338 MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_75 64332 65462 mexV 0/0 100.0 98.7 AE004091.2:4903465-4904596 MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_75 65513 68569 mexW 0/0 100.0 99.5 NC_002516.2:4904646-4907703 MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_52 338 1516 mexX 8/11 99.9 98.0 AB015853:145-1315 MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_227 1 2957 mexY 8/9 94.0 98.4 AB015853:1330-4471 MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_237 139031 140311 MuxA 0/0 100.0 99.3 AE004091.2:2855291-2854010 MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_237 140308 143439 MuxB 0/0 100.0 99.5 AE004091.2:2854014-2850882 MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_237 143436 146546 MuxC 0/0 100.0 99.1 AE004091.2:2850886-2847775 MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_237 146543 148039 OpmB 0/0 100.0 99.3 AE004091.2:2847779-2846282 OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_42 2066 3529 opmD 0/0 100.0 99.0 AE004091.2:4710620-4712084 OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_185 21335 22810 opmE 0/0 100.0 99.2 AB219524.1:4334-5810 opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_208 46259 47707 OpmH 0/0 100.0 99.2 AE004091.2:5584100-5585549 OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. triclosan
k141_196 12509 13948 OprJ 0/0 100.0 99.0 U57969:4622-6062 OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_175 47602 49059 OprM 0/0 100.0 98.8 AE004091.2:476332-477790 OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_237 179715 181133 OprN 0/0 100.0 99.3 AE004091.2:2813193-2814612 OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_277 3202 4029 OXA-2 0/0 100.0 100.0 M95287.4:2455-3283 OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. carbapenem, cephalosporin, penam
k141_256 112417 113205 OXA-488 0/0 100.0 100.0 SMRY02000082.1:18008-17219 Assigned by Lahey’s list of beta-lactamases no accessions or other information available cephalosporin, penam
k141_239 48863 50056 PDC-2 0/0 100.0 99.6 FJ666064:0-1194 PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. carbapenem, cephalosporin, monobactam
k141_157 6093 7526 PmpM 0/0 100.0 99.6 AE004091.2:1473980-1472546 PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. aminoglycoside, benzalkonium_chloride, fluoroquinolone
k141_200 19447 20085 Pseudomonas_aeruginosa_catB7 0/0 100.0 98.8 NC_002516.2:780101-779462 catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa phenicol
k141_121 32474 32806 Pseudomonas_aeruginosa_emrE 0/0 100.0 98.8 AE004091.2:5606102-5606435 EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. aminoglycoside
k141_49 14803 15273 Pseudomonas_aeruginosa_soxR 0/0 100.0 99.4 AE004091.2:2503895-2503424 SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
k141_130 772 1611 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
k141_277 447 1307 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
k141_65 19383 20534 TriA 0/0 100.0 99.0 AE004091.2:177306-178458 TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_65 20531 21601 TriB 0/0 100.0 99.3 AE004091.2:178454-179525 TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_65 21598 24645 TriC 0/0 100.0 99.3 AE004091.2:179521-182569 TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_277 1976 2764 (AGly)aadA5 0/0 100 99.6 AF137361:64-852 (AGly)aadA5 NA
k141_62 1402 2247 (AGly)aadA6 0/0 100 100.0 AF140629:61-906 (AGly)aadA6 NA
k141_277 1385 1918 (AGly)aadB 0/0 100 99.2 JQ690540:4275-4808 (AGly)aadB NA
k141_239 35612 36418 (AGly)aph(3’’)-IIb 0/0 100 98.8 X90856:388-1194 (AGly)aph(3’’)-IIb NA
k141_177 4766 5545 (AGly)aphA6 0/0 100 98.3 JF949760:695-1474 (AGly)aphA6 NA
k141_277 3202 4029 (Bla)blaOXA-2 0/0 100 100.0 HM131431:1-828 (Bla)blaOXA-2 NA
k141_256 112417 113205 (Bla)blaOXA-50 0/0 100 98.5 AM117128:1-789 (Bla)blaOXA-50 NA
k141_239 48863 50056 (Bla)blaPDC-195 0/0 100 99.2 MF098287:1-1194 (Bla)blaPDC-195 NA
k141_277 447 1307 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
k141_22 8616 8813 (Flq)crpP 0/0 100 98.0 NG_062203:101-298 (Flq)crpP NA
k141_239 17699 18907 (Phe)bcr1 0/0 100 99.4 NG_055652:101-1309 (Phe)bcr1 NA
k141_200 19447 20085 (Phe)catB7 0/0 100 98.8 AF036933:177-815 (Phe)catB7 NA
k141_130 772 1611 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_277 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_62 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_277 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_239 35612 36418 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_177 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_277 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_256 112417 113205 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_239 48834 50056 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_277 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_200 19447 20085 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_22 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_240 180 587 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_130 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_277 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_62 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_277 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_239 35612 36418 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_177 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_277 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_256 112417 113205 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_239 48834 50056 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_277 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_200 19447 20085 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_22 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_240 180 587 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_130 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
123_pio
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_262 1976 2764 aadA5_1 0/0 100 99.6 AF137361 aadA5 Streptomycin
k141_136 1402 2247 aadA6_1 0/0 100 100.0 AF140629 aadA6 Streptomycin
k141_262 1385 1918 ant(2’’)-Ia_13 0/0 100 99.8 DQ176450 ant(2’’)-Ia Gentamicin, Tobramycin
k141_40 102095 102901 aph(3’)-IIb_1 0/0 100 98.8 X90856 aph(3’)-IIb
k141_80 4766 5545 aph(3’)-VIa_1 0/0 100 98.5 X07753 aph(3’)-VIa Amikacin
k141_262 2883 3710 blaOXA-2_1 0/0 100 100.0 DQ112222 blaOXA-2 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin
k141_51 55607 56395 blaOXA-488_1 0/0 100 99.9 CP017969 blaOXA-488
k141_40 88546 89739 blaPAO_2 0/0 100 99.2 FJ666065 blaPAO
k141_262 447 1307 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
k141_218 19454 20092 catB7_1 0/0 100 98.8 AF036933 catB7 Chloramphenicol
k141_23 8616 8813 crpP_1 0/0 100 98.0 HM560971 crpP Ciprofloxacin
k141_289 180 587 fosA_4 0/0 100 99.0 ACWU01000146 fosA Fosfomycin
k141_150 745 1611 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_262 1976 2764 aadA5 0/0 100.0 99.6 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
k141_136 1402 2247 aadA6 0/0 100.0 100.0 AM087411:1611-2457 aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa aminoglycoside
k141_262 1385 1918 ANT(2’’)-Ia 0/0 100.0 99.2 AF078527:3769-4303 Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii aminoglycoside
k141_40 102095 102901 APH(3’)-IIb 0/0 100.0 98.8 X90856:387-1194 APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa aminoglycoside
k141_80 4766 5545 APH(3’)-VIa 0/0 100.0 98.5 X07753:102-882 APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii aminoglycoside
k141_18 38959 39120 ArmR 0/0 100.0 96.9 AE004091.2:4165880-4165718 ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_266 63653 65641 arnA 0/0 100.0 99.5 AE004091.2:3982020-3984009 arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. peptide
k141_176 82119 83552 basS 0/0 100.0 98.7 JQ340365:0-1434 Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) peptide
k141_40 119606 120814 bcr-1 0/0 100.0 99.4 CP012901.1:5980365-5979156 Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene bicyclomycin
k141_23 8616 8813 CrpP 0/0 100.0 98.0 HM560971.1:119269-119071 A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. fluoroquinolone
k141_289 180 587 fosA 0/0 100.0 99.5 AE004091.2:1221690-1222098 An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. fosfomycin
k141_66 9702 10853 MexA 0/0 100.0 99.3 AE004091.2:472023-473175 MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_66 6546 9686 MexB 0/0 100.0 99.3 L11616:1569-4710 MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_265 6270 7433 MexC 0/0 100.0 99.4 U57969:294-1458 MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_265 7461 10592 MexD 2/2 100.0 99.3 U57969:1485-4617 MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_123 28340 29584 MexE 0/0 100.0 99.4 AE004091.2:2808742-2809987 MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_123 29606 32794 MexF 0/0 100.0 99.7 AE004091.2:2810008-2813197 MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). diaminopyrimidine, fluoroquinolone, phenicol
k141_33 57208 57654 mexG 0/0 100.0 99.8 AE004091.2:4705955-4706402 MexG is a membrane protein required for MexGHI-OpmD efflux activity. acridine_dye, fluoroquinolone, tetracycline
k141_33 57662 58774 mexH 0/0 100.0 99.5 AE004091.2:4706409-4707522 MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_33 58787 61876 mexI 0/0 100.0 99.6 AE004091.2:4707534-4710624 MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_215 6609 7712 mexJ 0/0 100.0 99.0 AE004091.2:4120373-4119269 mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_215 7717 10794 mexK 0/0 100.0 99.5 AE004091.2:4119265-4116187 mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_215 5875 6513 mexL 0/0 100.0 99.8 AE004091.2:4120468-4121107 MexL is a specific repressor of mexJK transcription and autoregulates its own expression. macrolide, tetracycline, triclosan
k141_139 39134 40291 mexM 0/0 100.0 99.4 AB219523.1:21-1179 mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. phenicol
k141_139 36027 39137 mexN 0/0 100.0 99.2 AB219523.1:1175-4286 MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. phenicol
k141_266 24276 25433 mexP 0/0 100.0 98.8 AB219524.1:22-1180 MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_266 21118 24279 mexQ 0/0 100.0 99.2 AB219524.1:1176-4338 MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_87 57680 58810 mexV 0/0 100.0 98.7 AE004091.2:4903465-4904596 MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_87 54573 57629 mexW 0/0 100.0 99.5 NC_002516.2:4904646-4907703 MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_258 9842 11020 mexX 8/11 99.9 98.0 AB015853:145-1315 MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_258 6689 9826 mexY 8/9 99.8 98.6 AB015853:1330-4471 MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_123 73613 74893 MuxA 0/0 100.0 99.3 AE004091.2:2855291-2854010 MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_123 70485 73616 MuxB 0/0 100.0 99.5 AE004091.2:2854014-2850882 MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_123 67378 70488 MuxC 0/0 100.0 99.1 AE004091.2:2850886-2847775 MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_123 65885 67381 OpmB 0/0 100.0 99.3 AE004091.2:2847779-2846282 OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_33 61873 63336 opmD 0/0 100.0 99.0 AE004091.2:4710620-4712084 OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_266 19646 21121 opmE 0/0 100.0 99.2 AB219524.1:4334-5810 opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_85 46293 47741 OpmH 0/0 100.0 99.2 AE004091.2:5584100-5585549 OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. triclosan
k141_265 10598 12037 OprJ 0/0 100.0 99.0 U57969:4622-6062 OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_66 5087 6544 OprM 0/0 100.0 98.8 AE004091.2:476332-477790 OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_123 32791 34209 OprN 0/0 100.0 99.3 AE004091.2:2813193-2814612 OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_262 2883 3710 OXA-2 0/0 100.0 100.0 M95287.4:2455-3283 OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. carbapenem, cephalosporin, penam
k141_51 55607 56395 OXA-488 0/0 100.0 100.0 SMRY02000082.1:18008-17219 Assigned by Lahey’s list of beta-lactamases no accessions or other information available cephalosporin, penam
k141_40 88546 89739 PDC-2 0/0 100.0 99.6 FJ666064:0-1194 PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. carbapenem, cephalosporin, monobactam
k141_179 6093 7526 PmpM 0/0 100.0 99.6 AE004091.2:1473980-1472546 PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. aminoglycoside, benzalkonium_chloride, fluoroquinolone
k141_218 19454 20092 Pseudomonas_aeruginosa_catB7 0/0 100.0 98.8 NC_002516.2:780101-779462 catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa phenicol
k141_62 16333 16665 Pseudomonas_aeruginosa_emrE 0/0 100.0 98.8 AE004091.2:5606102-5606435 EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. aminoglycoside
k141_261 10399 10869 Pseudomonas_aeruginosa_soxR 0/0 100.0 99.4 AE004091.2:2503895-2503424 SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
k141_150 772 1611 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
k141_262 447 1307 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
k141_63 21350 22501 TriA 0/0 100.0 99.0 AE004091.2:177306-178458 TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_63 20283 21353 TriB 0/0 100.0 99.3 AE004091.2:178454-179525 TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_63 17239 20286 TriC 0/0 100.0 99.3 AE004091.2:179521-182569 TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_262 1976 2764 (AGly)aadA5 0/0 100 99.6 AF137361:64-852 (AGly)aadA5 NA
k141_136 1402 2247 (AGly)aadA6 0/0 100 100.0 AF140629:61-906 (AGly)aadA6 NA
k141_262 1385 1918 (AGly)aadB 0/0 100 99.2 JQ690540:4275-4808 (AGly)aadB NA
k141_40 102095 102901 (AGly)aph(3’’)-IIb 0/0 100 98.8 X90856:388-1194 (AGly)aph(3’’)-IIb NA
k141_80 4766 5545 (AGly)aphA6 0/0 100 98.3 JF949760:695-1474 (AGly)aphA6 NA
k141_262 2883 3710 (Bla)blaOXA-2 0/0 100 100.0 HM131431:1-828 (Bla)blaOXA-2 NA
k141_51 55607 56395 (Bla)blaOXA-50 0/0 100 98.5 AM117128:1-789 (Bla)blaOXA-50 NA
k141_40 88546 89739 (Bla)blaPDC-195 0/0 100 99.2 MF098287:1-1194 (Bla)blaPDC-195 NA
k141_262 447 1307 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
k141_23 8616 8813 (Flq)crpP 0/0 100 98.0 NG_062203:101-298 (Flq)crpP NA
k141_40 119606 120814 (Phe)bcr1 0/0 100 99.4 NG_055652:101-1309 (Phe)bcr1 NA
k141_218 19454 20092 (Phe)catB7 0/0 100 98.8 AF036933:177-815 (Phe)catB7 NA
k141_150 772 1611 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_262 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_136 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_262 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_40 102095 102901 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_80 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_262 2883 3710 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_51 55607 56395 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_40 88546 89768 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_262 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_218 19454 20092 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_23 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_289 180 587 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_150 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_262 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_136 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_262 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_40 102095 102901 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_80 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_262 2883 3710 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_51 55607 56395 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_40 88546 89768 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_262 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_218 19454 20092 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_23 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_289 180 587 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_150 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
129_pio
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_251 1976 2764 aadA5_1 0/0 100 99.6 AF137361 aadA5 Streptomycin
k141_63 1402 2247 aadA6_1 0/0 100 100.0 AF140629 aadA6 Streptomycin
k141_251 1385 1918 ant(2’’)-Ia_13 0/0 100 99.8 DQ176450 ant(2’’)-Ia Gentamicin, Tobramycin
k141_146 102098 102904 aph(3’)-IIb_1 0/0 100 98.8 X90856 aph(3’)-IIb
k141_69 4766 5545 aph(3’)-VIa_1 0/0 100 98.5 X07753 aph(3’)-VIa Amikacin
k141_251 3202 4029 blaOXA-2_1 0/0 100 100.0 DQ112222 blaOXA-2 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin
k141_97 83924 84712 blaOXA-488_1 0/0 100 99.9 CP017969 blaOXA-488
k141_146 88549 89742 blaPAO_2 0/0 100 99.2 FJ666065 blaPAO
k141_251 447 1307 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
k141_47 19428 20066 catB7_1 0/0 100 98.8 AF036933 catB7 Chloramphenicol
k141_24 8616 8813 crpP_1 0/0 100 98.0 HM560971 crpP Ciprofloxacin
k141_227 180 587 fosA_4 0/0 100 99.0 ACWU01000146 fosA Fosfomycin
k141_125 745 1611 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_251 1976 2764 aadA5 0/0 100.0 99.6 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
k141_63 1402 2247 aadA6 0/0 100.0 100.0 AM087411:1611-2457 aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa aminoglycoside
k141_251 1385 1918 ANT(2’’)-Ia 0/0 100.0 99.2 AF078527:3769-4303 Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii aminoglycoside
k141_146 102098 102904 APH(3’)-IIb 0/0 100.0 98.8 X90856:387-1194 APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa aminoglycoside
k141_69 4766 5545 APH(3’)-VIa 0/0 100.0 98.5 X07753:102-882 APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii aminoglycoside
k141_164 130171 130332 ArmR 0/0 100.0 96.9 AE004091.2:4165880-4165718 ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_139 131044 133032 arnA 0/0 100.0 99.5 AE004091.2:3982020-3984009 arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. peptide
k141_135 94388 95821 basS 0/0 100.0 98.7 JQ340365:0-1434 Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) peptide
k141_146 119609 120817 bcr-1 0/0 100.0 99.4 CP012901.1:5980365-5979156 Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene bicyclomycin
k141_24 8616 8813 CrpP 0/0 100.0 98.0 HM560971.1:119269-119071 A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. fluoroquinolone
k141_227 180 587 fosA 0/0 100.0 99.5 AE004091.2:1221690-1222098 An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. fosfomycin
k141_193 43278 44429 MexA 0/0 100.0 99.3 AE004091.2:472023-473175 MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_193 44445 47585 MexB 0/0 100.0 99.3 L11616:1569-4710 MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_54 6270 7433 MexC 0/0 100.0 99.4 U57969:294-1458 MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_54 7461 10592 MexD 2/2 100.0 99.3 U57969:1485-4617 MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_257 28340 29584 MexE 0/0 100.0 99.4 AE004091.2:2808742-2809987 MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_257 29606 32794 MexF 0/0 100.0 99.7 AE004091.2:2810008-2813197 MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). diaminopyrimidine, fluoroquinolone, phenicol
k141_100 57022 57468 mexG 0/0 100.0 99.8 AE004091.2:4705955-4706402 MexG is a membrane protein required for MexGHI-OpmD efflux activity. acridine_dye, fluoroquinolone, tetracycline
k141_100 57476 58588 mexH 0/0 100.0 99.5 AE004091.2:4706409-4707522 MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_100 58601 61690 mexI 0/0 100.0 99.6 AE004091.2:4707534-4710624 MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_103 6605 7708 mexJ 0/0 100.0 99.0 AE004091.2:4120373-4119269 mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_103 7713 10790 mexK 0/0 100.0 99.5 AE004091.2:4119265-4116187 mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_103 5871 6509 mexL 0/0 100.0 99.8 AE004091.2:4120468-4121107 MexL is a specific repressor of mexJK transcription and autoregulates its own expression. macrolide, tetracycline, triclosan
k141_96 44029 45186 mexM 0/0 100.0 99.4 AB219523.1:21-1179 mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. phenicol
k141_96 40922 44032 mexN 0/0 100.0 99.2 AB219523.1:1175-4286 MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. phenicol
k141_235 24381 25538 mexP 0/0 100.0 98.8 AB219524.1:22-1180 MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_235 21223 24384 mexQ 0/0 100.0 99.2 AB219524.1:1176-4338 MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_67 96672 97802 mexV 0/0 100.0 98.7 AE004091.2:4903465-4904596 MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_67 93565 96621 mexW 0/0 100.0 99.5 NC_002516.2:4904646-4907703 MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_126 9842 11020 mexX 8/11 99.9 98.0 AB015853:145-1315 MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_126 6689 9826 mexY 8/9 99.8 98.6 AB015853:1330-4471 MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_257 73613 74893 MuxA 0/0 100.0 99.3 AE004091.2:2855291-2854010 MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_257 70485 73616 MuxB 0/0 100.0 99.5 AE004091.2:2854014-2850882 MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_257 67378 70488 MuxC 0/0 100.0 99.1 AE004091.2:2850886-2847775 MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_257 65885 67381 OpmB 0/0 100.0 99.3 AE004091.2:2847779-2846282 OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_100 61687 63150 opmD 0/0 100.0 99.0 AE004091.2:4710620-4712084 OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_235 19751 21226 opmE 0/0 100.0 99.2 AB219524.1:4334-5810 opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_112 46353 47801 OpmH 0/0 100.0 99.2 AE004091.2:5584100-5585549 OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. triclosan
k141_54 10598 12037 OprJ 0/0 100.0 99.0 U57969:4622-6062 OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_193 47587 49044 OprM 0/0 100.0 98.8 AE004091.2:476332-477790 OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_257 32791 34209 OprN 0/0 100.0 99.3 AE004091.2:2813193-2814612 OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_251 3202 4029 OXA-2 0/0 100.0 100.0 M95287.4:2455-3283 OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. carbapenem, cephalosporin, penam
k141_97 83924 84712 OXA-488 0/0 100.0 100.0 SMRY02000082.1:18008-17219 Assigned by Lahey’s list of beta-lactamases no accessions or other information available cephalosporin, penam
k141_146 88549 89742 PDC-2 0/0 100.0 99.6 FJ666064:0-1194 PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. carbapenem, cephalosporin, monobactam
k141_68 6093 7526 PmpM 0/0 100.0 99.6 AE004091.2:1473980-1472546 PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. aminoglycoside, benzalkonium_chloride, fluoroquinolone
k141_47 19428 20066 Pseudomonas_aeruginosa_catB7 0/0 100.0 98.8 NC_002516.2:780101-779462 catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa phenicol
k141_112 68356 68688 Pseudomonas_aeruginosa_emrE 0/0 100.0 98.8 AE004091.2:5606102-5606435 EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. aminoglycoside
k141_202 22585 23055 Pseudomonas_aeruginosa_soxR 0/0 100.0 99.4 AE004091.2:2503895-2503424 SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
k141_125 772 1611 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
k141_251 447 1307 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
k141_199 112125 113276 TriA 0/0 100.0 99.0 AE004091.2:177306-178458 TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_199 113273 114343 TriB 0/0 100.0 99.3 AE004091.2:178454-179525 TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_199 114340 117387 TriC 0/0 100.0 99.3 AE004091.2:179521-182569 TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_251 1976 2764 (AGly)aadA5 0/0 100 99.6 AF137361:64-852 (AGly)aadA5 NA
k141_63 1402 2247 (AGly)aadA6 0/0 100 100.0 AF140629:61-906 (AGly)aadA6 NA
k141_251 1385 1918 (AGly)aadB 0/0 100 99.2 JQ690540:4275-4808 (AGly)aadB NA
k141_146 102098 102904 (AGly)aph(3’’)-IIb 0/0 100 98.8 X90856:388-1194 (AGly)aph(3’’)-IIb NA
k141_69 4766 5545 (AGly)aphA6 0/0 100 98.3 JF949760:695-1474 (AGly)aphA6 NA
k141_251 3202 4029 (Bla)blaOXA-2 0/0 100 100.0 HM131431:1-828 (Bla)blaOXA-2 NA
k141_97 83924 84712 (Bla)blaOXA-50 0/0 100 98.5 AM117128:1-789 (Bla)blaOXA-50 NA
k141_146 88549 89742 (Bla)blaPDC-195 0/0 100 99.2 MF098287:1-1194 (Bla)blaPDC-195 NA
k141_251 447 1307 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
k141_24 8616 8813 (Flq)crpP 0/0 100 98.0 NG_062203:101-298 (Flq)crpP NA
k141_146 119609 120817 (Phe)bcr1 0/0 100 99.4 NG_055652:101-1309 (Phe)bcr1 NA
k141_47 19428 20066 (Phe)catB7 0/0 100 98.8 AF036933:177-815 (Phe)catB7 NA
k141_125 772 1611 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_251 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_63 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_251 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_146 102098 102904 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_69 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_251 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_97 83924 84712 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_146 88549 89771 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_251 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_47 19428 20066 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_24 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_227 180 587 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_125 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_251 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_63 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_251 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_146 102098 102904 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_69 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_251 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_97 83924 84712 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_146 88549 89771 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_251 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_47 19428 20066 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_24 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_227 180 587 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_125 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
159_pio
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_308 1976 2764 aadA5_1 0/0 100 99.6 AF137361 aadA5 Streptomycin
k141_161 1402 2247 aadA6_1 0/0 100 100.0 AF140629 aadA6 Streptomycin
k141_308 1385 1918 ant(2’’)-Ia_13 0/0 100 99.8 DQ176450 ant(2’’)-Ia Gentamicin, Tobramycin
k141_61 102213 103019 aph(3’)-IIb_1 0/0 100 98.8 X90856 aph(3’)-IIb
k141_116 1147 1926 aph(3’)-VIa_1 0/0 100 98.5 X07753 aph(3’)-VIa Amikacin
k141_308 3202 4029 blaOXA-2_1 0/0 100 100.0 DQ112222 blaOXA-2 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin
k141_169 31462 32250 blaOXA-488_1 0/0 100 99.9 CP017969 blaOXA-488
k141_61 88664 89857 blaPAO_2 0/0 100 99.2 FJ666065 blaPAO
k141_308 447 1307 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
k141_320 19453 20091 catB7_1 0/0 100 98.8 AF036933 catB7 Chloramphenicol
k141_41 8616 8813 crpP_1 0/0 100 98.0 HM560971 crpP Ciprofloxacin
k141_119 18521 18928 fosA_4 0/0 100 99.0 ACWU01000146 fosA Fosfomycin
k141_143 745 1611 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_308 1976 2764 aadA5 0/0 100.0 99.6 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
k141_161 1402 2247 aadA6 0/0 100.0 100.0 AM087411:1611-2457 aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa aminoglycoside
k141_308 1385 1918 ANT(2’’)-Ia 0/0 100.0 99.2 AF078527:3769-4303 Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii aminoglycoside
k141_61 102213 103019 APH(3’)-IIb 0/0 100.0 98.8 X90856:387-1194 APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa aminoglycoside
k141_116 1147 1926 APH(3’)-VIa 0/0 100.0 98.5 X07753:102-882 APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii aminoglycoside
k141_70 3206 3367 ArmR 0/0 100.0 96.9 AE004091.2:4165880-4165718 ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_121 65354 67342 arnA 0/0 100.0 99.5 AE004091.2:3982020-3984009 arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. peptide
k141_150 94388 95821 basS 0/0 100.0 98.7 JQ340365:0-1434 Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) peptide
k141_61 119724 120932 bcr-1 0/0 100.0 99.4 CP012901.1:5980365-5979156 Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene bicyclomycin
k141_41 8616 8813 CrpP 0/0 100.0 98.0 HM560971.1:119269-119071 A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. fluoroquinolone
k141_119 18521 18928 fosA 0/0 100.0 99.5 AE004091.2:1221690-1222098 An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. fosfomycin
k141_225 29648 30799 MexA 0/0 100.0 99.3 AE004091.2:472023-473175 MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_225 26492 29632 MexB 0/0 100.0 99.3 L11616:1569-4710 MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_113 8209 9372 MexC 0/0 100.0 99.4 U57969:294-1458 MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_113 9400 12531 MexD 2/2 100.0 99.3 U57969:1485-4617 MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_273 28340 29584 MexE 0/0 100.0 99.4 AE004091.2:2808742-2809987 MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_273 29606 32794 MexF 0/0 100.0 99.7 AE004091.2:2810008-2813197 MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). diaminopyrimidine, fluoroquinolone, phenicol
k141_105 5058 5504 mexG 0/0 100.0 99.8 AE004091.2:4705955-4706402 MexG is a membrane protein required for MexGHI-OpmD efflux activity. acridine_dye, fluoroquinolone, tetracycline
k141_105 5512 6624 mexH 0/0 100.0 99.5 AE004091.2:4706409-4707522 MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_105 6637 9726 mexI 0/0 100.0 99.6 AE004091.2:4707534-4710624 MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_220 4527 5630 mexJ 0/0 100.0 99.0 AE004091.2:4120373-4119269 mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_220 1445 4522 mexK 0/0 100.0 99.5 AE004091.2:4119265-4116187 mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_220 5726 6364 mexL 0/0 100.0 99.8 AE004091.2:4120468-4121107 MexL is a specific repressor of mexJK transcription and autoregulates its own expression. macrolide, tetracycline, triclosan
k141_255 49418 50575 mexM 0/0 100.0 99.4 AB219523.1:21-1179 mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. phenicol
k141_255 46311 49421 mexN 0/0 100.0 99.2 AB219523.1:1175-4286 MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. phenicol
k141_121 25977 27134 mexP 0/0 100.0 98.8 AB219524.1:22-1180 MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_121 22819 25980 mexQ 0/0 100.0 99.2 AB219524.1:1176-4338 MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_246 57714 58844 mexV 0/0 100.0 98.7 AE004091.2:4903465-4904596 MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_246 54607 57663 mexW 0/0 100.0 99.5 NC_002516.2:4904646-4907703 MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_174 17186 18364 mexX 8/11 99.9 98.0 AB015853:145-1315 MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_174 18380 21517 mexY 8/9 99.8 98.5 AB015853:1330-4471 MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_273 73613 74893 MuxA 0/0 100.0 99.3 AE004091.2:2855291-2854010 MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_273 70485 73616 MuxB 0/0 100.0 99.5 AE004091.2:2854014-2850882 MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_273 67378 70488 MuxC 0/0 100.0 99.1 AE004091.2:2850886-2847775 MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_273 65885 67381 OpmB 0/0 100.0 99.3 AE004091.2:2847779-2846282 OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_105 9723 11186 opmD 0/0 100.0 99.0 AE004091.2:4710620-4712084 OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_121 21347 22822 opmE 0/0 100.0 99.2 AB219524.1:4334-5810 opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_281 53445 54893 OpmH 0/0 100.0 99.2 AE004091.2:5584100-5585549 OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. triclosan
k141_113 12537 13976 OprJ 0/0 100.0 99.0 U57969:4622-6062 OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_225 25033 26490 OprM 0/0 100.0 98.8 AE004091.2:476332-477790 OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_273 32791 34209 OprN 0/0 100.0 99.3 AE004091.2:2813193-2814612 OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_308 3202 4029 OXA-2 0/0 100.0 100.0 M95287.4:2455-3283 OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. carbapenem, cephalosporin, penam
k141_169 31462 32250 OXA-488 0/0 100.0 100.0 SMRY02000082.1:18008-17219 Assigned by Lahey’s list of beta-lactamases no accessions or other information available cephalosporin, penam
k141_61 88664 89857 PDC-2 0/0 100.0 99.6 FJ666064:0-1194 PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. carbapenem, cephalosporin, monobactam
k141_8 6093 7526 PmpM 0/0 100.0 99.6 AE004091.2:1473980-1472546 PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. aminoglycoside, benzalkonium_chloride, fluoroquinolone
k141_320 19453 20091 Pseudomonas_aeruginosa_catB7 0/0 100.0 98.8 NC_002516.2:780101-779462 catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa phenicol
k141_281 32558 32890 Pseudomonas_aeruginosa_emrE 0/0 100.0 98.8 AE004091.2:5606102-5606435 EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. aminoglycoside
k141_159 10142 10612 Pseudomonas_aeruginosa_soxR 0/0 100.0 99.4 AE004091.2:2503895-2503424 SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
k141_143 772 1611 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
k141_308 447 1307 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
k141_258 75083 76234 TriA 0/0 100.0 99.0 AE004091.2:177306-178458 TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_258 74016 75086 TriB 0/0 100.0 99.3 AE004091.2:178454-179525 TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_258 70972 74019 TriC 0/0 100.0 99.3 AE004091.2:179521-182569 TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_308 1976 2764 (AGly)aadA5 0/0 100 99.6 AF137361:64-852 (AGly)aadA5 NA
k141_161 1402 2247 (AGly)aadA6 0/0 100 100.0 AF140629:61-906 (AGly)aadA6 NA
k141_308 1385 1918 (AGly)aadB 0/0 100 99.2 JQ690540:4275-4808 (AGly)aadB NA
k141_61 102213 103019 (AGly)aph(3’’)-IIb 0/0 100 98.8 X90856:388-1194 (AGly)aph(3’’)-IIb NA
k141_116 1147 1926 (AGly)aphA6 0/0 100 98.3 JF949760:695-1474 (AGly)aphA6 NA
k141_308 3202 4029 (Bla)blaOXA-2 0/0 100 100.0 HM131431:1-828 (Bla)blaOXA-2 NA
k141_169 31462 32250 (Bla)blaOXA-50 0/0 100 98.5 AM117128:1-789 (Bla)blaOXA-50 NA
k141_61 88664 89857 (Bla)blaPDC-195 0/0 100 99.2 MF098287:1-1194 (Bla)blaPDC-195 NA
k141_308 447 1307 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
k141_41 8616 8813 (Flq)crpP 0/0 100 98.0 NG_062203:101-298 (Flq)crpP NA
k141_61 119724 120932 (Phe)bcr1 0/0 100 99.4 NG_055652:101-1309 (Phe)bcr1 NA
k141_320 19453 20091 (Phe)catB7 0/0 100 98.8 AF036933:177-815 (Phe)catB7 NA
k141_143 772 1611 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_308 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_161 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_308 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_61 102213 103019 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_116 1147 1926 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_308 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_169 31462 32250 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_61 88664 89886 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_308 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_320 19453 20091 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_41 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_119 18521 18928 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_143 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_308 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_161 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_308 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_61 102213 103019 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_116 1147 1926 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_308 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_169 31462 32250 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_61 88664 89886 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_308 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_320 19453 20091 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_41 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_119 18521 18928 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_143 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
165_pio
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_285 1976 2764 aadA5_1 0/0 100 99.6 AF137361 aadA5 Streptomycin
k141_145 1402 2247 aadA6_1 0/0 100 100.0 AF140629 aadA6 Streptomycin
k141_285 1385 1918 ant(2’’)-Ia_13 0/0 100 99.8 DQ176450 ant(2’’)-Ia Gentamicin, Tobramycin
k141_73 102055 102861 aph(3’)-IIb_1 0/0 100 98.8 X90856 aph(3’)-IIb
k141_79 4766 5545 aph(3’)-VIa_1 0/0 100 98.5 X07753 aph(3’)-VIa Amikacin
k141_285 3202 4029 blaOXA-2_1 0/0 100 100.0 DQ112222 blaOXA-2 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin
k141_171 31503 32291 blaOXA-488_1 0/0 100 99.9 CP017969 blaOXA-488
k141_73 88506 89699 blaPAO_2 0/0 100 99.2 FJ666065 blaPAO
k141_285 447 1307 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
k141_172 165529 166167 catB7_1 0/0 100 98.8 AF036933 catB7 Chloramphenicol
k141_19 8616 8813 crpP_1 0/0 100 98.0 HM560971 crpP Ciprofloxacin
k141_273 25374 25781 fosA_4 0/0 100 99.0 ACWU01000146 fosA Fosfomycin
k141_189 745 1611 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_285 1976 2764 aadA5 0/0 100.0 99.6 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
k141_145 1402 2247 aadA6 0/0 100.0 100.0 AM087411:1611-2457 aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa aminoglycoside
k141_285 1385 1918 ANT(2’’)-Ia 0/0 100.0 99.2 AF078527:3769-4303 Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii aminoglycoside
k141_73 102055 102861 APH(3’)-IIb 0/0 100.0 98.8 X90856:387-1194 APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa aminoglycoside
k141_79 4766 5545 APH(3’)-VIa 0/0 100.0 98.5 X07753:102-882 APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii aminoglycoside
k141_192 3125 3286 ArmR 0/0 100.0 96.9 AE004091.2:4165880-4165718 ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_286 63727 65715 arnA 0/0 100.0 99.5 AE004091.2:3982020-3984009 arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. peptide
k141_174 94388 95821 basS 0/0 100.0 98.7 JQ340365:0-1434 Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) peptide
k141_73 119566 120774 bcr-1 0/0 100.0 99.4 CP012901.1:5980365-5979156 Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene bicyclomycin
k141_19 8616 8813 CrpP 0/0 100.0 98.0 HM560971.1:119269-119071 A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. fluoroquinolone
k141_273 25374 25781 fosA 0/0 100.0 99.5 AE004091.2:1221690-1222098 An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. fosfomycin
k141_98 19654 20805 MexA 0/0 100.0 99.3 AE004091.2:472023-473175 MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_98 16498 19638 MexB 0/0 100.0 99.3 L11616:1569-4710 MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_241 6270 7433 MexC 0/0 100.0 99.4 U57969:294-1458 MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_241 7461 10592 MexD 2/2 100.0 99.3 U57969:1485-4617 MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_5 48428 49672 MexE 0/0 100.0 99.4 AE004091.2:2808742-2809987 MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_5 45218 48406 MexF 0/0 100.0 99.7 AE004091.2:2810008-2813197 MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). diaminopyrimidine, fluoroquinolone, phenicol
k141_123 2385 2831 mexG 0/0 100.0 99.8 AE004091.2:4705955-4706402 MexG is a membrane protein required for MexGHI-OpmD efflux activity. acridine_dye, fluoroquinolone, tetracycline
k141_123 2839 3951 mexH 0/0 100.0 99.5 AE004091.2:4706409-4707522 MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_123 3964 7053 mexI 0/0 100.0 99.6 AE004091.2:4707534-4710624 MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_61 6645 7748 mexJ 0/0 100.0 99.0 AE004091.2:4120373-4119269 mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_61 7753 10830 mexK 0/0 100.0 99.5 AE004091.2:4119265-4116187 mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_61 5911 6549 mexL 0/0 100.0 99.8 AE004091.2:4120468-4121107 MexL is a specific repressor of mexJK transcription and autoregulates its own expression. macrolide, tetracycline, triclosan
k141_243 69397 70554 mexM 0/0 100.0 99.4 AB219523.1:21-1179 mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. phenicol
k141_243 66290 69400 mexN 0/0 100.0 99.2 AB219523.1:1175-4286 MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. phenicol
k141_286 24276 25433 mexP 0/0 100.0 98.8 AB219524.1:22-1180 MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_286 21118 24279 mexQ 0/0 100.0 99.2 AB219524.1:1176-4338 MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_257 57723 58853 mexV 0/0 100.0 98.7 AE004091.2:4903465-4904596 MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_257 54616 57672 mexW 0/0 100.0 99.5 NC_002516.2:4904646-4907703 MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_113 9898 11076 mexX 8/11 99.9 98.0 AB015853:145-1315 MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_113 6745 9882 mexY 8/9 99.8 98.6 AB015853:1330-4471 MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_5 3119 4399 MuxA 0/0 100.0 99.3 AE004091.2:2855291-2854010 MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_5 4396 7527 MuxB 0/0 100.0 99.5 AE004091.2:2854014-2850882 MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_5 7524 10634 MuxC 0/0 100.0 99.1 AE004091.2:2850886-2847775 MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_5 10631 12127 OpmB 0/0 100.0 99.3 AE004091.2:2847779-2846282 OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_123 7050 8513 opmD 0/0 100.0 99.0 AE004091.2:4710620-4712084 OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_286 19646 21121 opmE 0/0 100.0 99.2 AB219524.1:4334-5810 opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_290 53305 54753 OpmH 0/0 100.0 99.2 AE004091.2:5584100-5585549 OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. triclosan
k141_241 10598 12037 OprJ 0/0 100.0 99.0 U57969:4622-6062 OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_98 15039 16496 OprM 0/0 100.0 98.8 AE004091.2:476332-477790 OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_5 43803 45221 OprN 0/0 100.0 99.3 AE004091.2:2813193-2814612 OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_285 3202 4029 OXA-2 0/0 100.0 100.0 M95287.4:2455-3283 OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. carbapenem, cephalosporin, penam
k141_171 31503 32291 OXA-488 0/0 100.0 100.0 SMRY02000082.1:18008-17219 Assigned by Lahey’s list of beta-lactamases no accessions or other information available cephalosporin, penam
k141_73 88506 89699 PDC-2 0/0 100.0 99.6 FJ666064:0-1194 PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. carbapenem, cephalosporin, monobactam
k141_214 6093 7526 PmpM 0/0 100.0 99.6 AE004091.2:1473980-1472546 PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. aminoglycoside, benzalkonium_chloride, fluoroquinolone
k141_172 165529 166167 Pseudomonas_aeruginosa_catB7 0/0 100.0 98.8 NC_002516.2:780101-779462 catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa phenicol
k141_290 32418 32750 Pseudomonas_aeruginosa_emrE 0/0 100.0 98.8 AE004091.2:5606102-5606435 EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. aminoglycoside
k141_284 19459 19929 Pseudomonas_aeruginosa_soxR 0/0 100.0 99.4 AE004091.2:2503895-2503424 SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
k141_189 772 1611 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
k141_285 447 1307 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
k141_232 19391 20542 TriA 0/0 100.0 99.0 AE004091.2:177306-178458 TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_232 20539 21609 TriB 0/0 100.0 99.3 AE004091.2:178454-179525 TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_232 21606 24653 TriC 0/0 100.0 99.3 AE004091.2:179521-182569 TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_285 1976 2764 (AGly)aadA5 0/0 100 99.6 AF137361:64-852 (AGly)aadA5 NA
k141_145 1402 2247 (AGly)aadA6 0/0 100 100.0 AF140629:61-906 (AGly)aadA6 NA
k141_285 1385 1918 (AGly)aadB 0/0 100 99.2 JQ690540:4275-4808 (AGly)aadB NA
k141_73 102055 102861 (AGly)aph(3’’)-IIb 0/0 100 98.8 X90856:388-1194 (AGly)aph(3’’)-IIb NA
k141_79 4766 5545 (AGly)aphA6 0/0 100 98.3 JF949760:695-1474 (AGly)aphA6 NA
k141_285 3202 4029 (Bla)blaOXA-2 0/0 100 100.0 HM131431:1-828 (Bla)blaOXA-2 NA
k141_171 31503 32291 (Bla)blaOXA-50 0/0 100 98.5 AM117128:1-789 (Bla)blaOXA-50 NA
k141_73 88506 89699 (Bla)blaPDC-195 0/0 100 99.2 MF098287:1-1194 (Bla)blaPDC-195 NA
k141_285 447 1307 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
k141_19 8616 8813 (Flq)crpP 0/0 100 98.0 NG_062203:101-298 (Flq)crpP NA
k141_73 119566 120774 (Phe)bcr1 0/0 100 99.4 NG_055652:101-1309 (Phe)bcr1 NA
k141_172 165529 166167 (Phe)catB7 0/0 100 98.8 AF036933:177-815 (Phe)catB7 NA
k141_189 772 1611 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_285 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_145 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_285 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_73 102055 102861 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_79 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_285 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_171 31503 32291 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_73 88506 89728 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_285 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_172 165529 166167 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_19 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_273 25374 25781 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_189 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_285 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_145 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_285 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_73 102055 102861 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_79 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_285 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_171 31503 32291 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_73 88506 89728 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_285 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_172 165529 166167 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_19 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_273 25374 25781 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_189 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
166_pio
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_278 1976 2764 aadA5_1 0/0 100 99.6 AF137361 aadA5 Streptomycin
k141_135 1402 2247 aadA6_1 0/0 100 100.0 AF140629 aadA6 Streptomycin
k141_278 1385 1918 ant(2’’)-Ia_13 0/0 100 99.8 DQ176450 ant(2’’)-Ia Gentamicin, Tobramycin
k141_224 102063 102869 aph(3’)-IIb_1 0/0 100 98.8 X90856 aph(3’)-IIb
k141_80 1147 1926 aph(3’)-VIa_1 0/0 100 98.5 X07753 aph(3’)-VIa Amikacin
k141_278 3202 4029 blaOXA-2_1 0/0 100 100.0 DQ112222 blaOXA-2 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin
k141_44 31470 32258 blaOXA-488_1 0/0 100 99.9 CP017969 blaOXA-488
k141_224 88514 89707 blaPAO_2 0/0 100 99.2 FJ666065 blaPAO
k141_278 447 1307 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
k141_230 19460 20098 catB7_1 0/0 100 98.8 AF036933 catB7 Chloramphenicol
k141_31 8616 8813 crpP_1 0/0 100 98.0 HM560971 crpP Ciprofloxacin
k141_82 18656 19063 fosA_4 0/0 100 99.0 ACWU01000146 fosA Fosfomycin
k141_161 745 1611 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_278 1976 2764 aadA5 0/0 100.0 99.6 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
k141_135 1402 2247 aadA6 0/0 100.0 100.0 AM087411:1611-2457 aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa aminoglycoside
k141_278 1385 1918 ANT(2’’)-Ia 0/0 100.0 99.2 AF078527:3769-4303 Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii aminoglycoside
k141_224 102063 102869 APH(3’)-IIb 0/0 100.0 98.8 X90856:387-1194 APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa aminoglycoside
k141_80 1147 1926 APH(3’)-VIa 0/0 100.0 98.5 X07753:102-882 APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii aminoglycoside
k141_139 20405 20566 ArmR 0/0 100.0 96.9 AE004091.2:4165880-4165718 ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_94 131233 133221 arnA 0/0 100.0 99.5 AE004091.2:3982020-3984009 arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. peptide
k141_257 81955 83388 basS 0/0 100.0 98.7 JQ340365:0-1434 Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) peptide
k141_224 119574 120782 bcr-1 0/0 100.0 99.4 CP012901.1:5980365-5979156 Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene bicyclomycin
k141_31 8616 8813 CrpP 0/0 100.0 98.0 HM560971.1:119269-119071 A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. fluoroquinolone
k141_82 18656 19063 fosA 0/0 100.0 99.5 AE004091.2:1221690-1222098 An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. fosfomycin
k141_265 42995 44146 MexA 0/0 100.0 99.3 AE004091.2:472023-473175 MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_265 44162 47302 MexB 0/0 100.0 99.3 L11616:1569-4710 MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_53 31375 32538 MexC 0/0 100.0 99.4 U57969:294-1458 MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_53 28216 31347 MexD 2/2 100.0 99.3 U57969:1485-4617 MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_169 28340 29584 MexE 0/0 100.0 99.4 AE004091.2:2808742-2809987 MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_169 29606 32794 MexF 0/0 100.0 99.7 AE004091.2:2810008-2813197 MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). diaminopyrimidine, fluoroquinolone, phenicol
k141_121 40004 40450 mexG 0/0 100.0 99.8 AE004091.2:4705955-4706402 MexG is a membrane protein required for MexGHI-OpmD efflux activity. acridine_dye, fluoroquinolone, tetracycline
k141_121 40458 41570 mexH 0/0 100.0 99.5 AE004091.2:4706409-4707522 MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_121 41583 44672 mexI 0/0 100.0 99.6 AE004091.2:4707534-4710624 MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_170 6646 7749 mexJ 0/0 100.0 99.0 AE004091.2:4120373-4119269 mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_170 7754 10831 mexK 0/0 100.0 99.5 AE004091.2:4119265-4116187 mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_170 5912 6550 mexL 0/0 100.0 99.8 AE004091.2:4120468-4121107 MexL is a specific repressor of mexJK transcription and autoregulates its own expression. macrolide, tetracycline, triclosan
k141_232 36551 37708 mexM 0/0 100.0 99.4 AB219523.1:21-1179 mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. phenicol
k141_232 37705 40815 mexN 0/0 100.0 99.2 AB219523.1:1175-4286 MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. phenicol
k141_94 171441 172598 mexP 0/0 100.0 98.8 AB219524.1:22-1180 MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_94 172595 175756 mexQ 0/0 100.0 99.2 AB219524.1:1176-4338 MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_218 20698 21828 mexV 0/0 100.0 98.7 AE004091.2:4903465-4904596 MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_218 17591 20647 mexW 0/0 100.0 99.5 NC_002516.2:4904646-4907703 MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_112 17331 18509 mexX 8/11 99.9 98.0 AB015853:145-1315 MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_112 18525 21662 mexY 8/9 99.8 98.5 AB015853:1330-4471 MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_169 73613 74893 MuxA 0/0 100.0 99.3 AE004091.2:2855291-2854010 MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_169 70485 73616 MuxB 0/0 100.0 99.5 AE004091.2:2854014-2850882 MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_169 67378 70488 MuxC 0/0 100.0 99.1 AE004091.2:2850886-2847775 MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_169 65885 67381 OpmB 0/0 100.0 99.3 AE004091.2:2847779-2846282 OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_121 44669 46132 opmD 0/0 100.0 99.0 AE004091.2:4710620-4712084 OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_94 175753 177228 opmE 0/0 100.0 99.2 AB219524.1:4334-5810 opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_196 4197 5645 OpmH 0/0 100.0 99.2 AE004091.2:5584100-5585549 OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. triclosan
k141_53 26771 28210 OprJ 0/0 100.0 99.0 U57969:4622-6062 OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_265 47304 48761 OprM 0/0 100.0 98.8 AE004091.2:476332-477790 OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_169 32791 34209 OprN 0/0 100.0 99.3 AE004091.2:2813193-2814612 OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_278 3202 4029 OXA-2 0/0 100.0 100.0 M95287.4:2455-3283 OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. carbapenem, cephalosporin, penam
k141_44 31470 32258 OXA-488 0/0 100.0 100.0 SMRY02000082.1:18008-17219 Assigned by Lahey’s list of beta-lactamases no accessions or other information available cephalosporin, penam
k141_224 88514 89707 PDC-2 0/0 100.0 99.6 FJ666064:0-1194 PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. carbapenem, cephalosporin, monobactam
k141_43 5205 6638 PmpM 0/0 100.0 99.6 AE004091.2:1473980-1472546 PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. aminoglycoside, benzalkonium_chloride, fluoroquinolone
k141_230 19460 20098 Pseudomonas_aeruginosa_catB7 0/0 100.0 98.8 NC_002516.2:780101-779462 catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa phenicol
k141_281 16344 16676 Pseudomonas_aeruginosa_emrE 0/0 100.0 98.8 AE004091.2:5606102-5606435 EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. aminoglycoside
k141_129 10370 10840 Pseudomonas_aeruginosa_soxR 0/0 100.0 99.4 AE004091.2:2503895-2503424 SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
k141_161 772 1611 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
k141_278 447 1307 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
k141_207 48140 49291 TriA 0/0 100.0 99.0 AE004091.2:177306-178458 TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_207 47073 48143 TriB 0/0 100.0 99.3 AE004091.2:178454-179525 TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_207 44029 47076 TriC 0/0 100.0 99.3 AE004091.2:179521-182569 TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_278 1976 2764 (AGly)aadA5 0/0 100 99.6 AF137361:64-852 (AGly)aadA5 NA
k141_135 1402 2247 (AGly)aadA6 0/0 100 100.0 AF140629:61-906 (AGly)aadA6 NA
k141_278 1385 1918 (AGly)aadB 0/0 100 99.2 JQ690540:4275-4808 (AGly)aadB NA
k141_224 102063 102869 (AGly)aph(3’’)-IIb 0/0 100 98.8 X90856:388-1194 (AGly)aph(3’’)-IIb NA
k141_80 1147 1926 (AGly)aphA6 0/0 100 98.3 JF949760:695-1474 (AGly)aphA6 NA
k141_278 3202 4029 (Bla)blaOXA-2 0/0 100 100.0 HM131431:1-828 (Bla)blaOXA-2 NA
k141_44 31470 32258 (Bla)blaOXA-50 0/0 100 98.5 AM117128:1-789 (Bla)blaOXA-50 NA
k141_224 88514 89707 (Bla)blaPDC-195 0/0 100 99.2 MF098287:1-1194 (Bla)blaPDC-195 NA
k141_278 447 1307 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
k141_31 8616 8813 (Flq)crpP 0/0 100 98.0 NG_062203:101-298 (Flq)crpP NA
k141_224 119574 120782 (Phe)bcr1 0/0 100 99.4 NG_055652:101-1309 (Phe)bcr1 NA
k141_230 19460 20098 (Phe)catB7 0/0 100 98.8 AF036933:177-815 (Phe)catB7 NA
k141_161 772 1611 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_278 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_135 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_278 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_224 102063 102869 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_80 1147 1926 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_278 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_44 31470 32258 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_224 88514 89736 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_278 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_230 19460 20098 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_31 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_82 18656 19063 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_161 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_278 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_135 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_278 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_224 102063 102869 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_80 1147 1926 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_278 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_44 31470 32258 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_224 88514 89736 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_278 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_230 19460 20098 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_31 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_82 18656 19063 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_161 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
168_pio
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_284 1976 2764 aadA5_1 0/0 100 99.6 AF137361 aadA5 Streptomycin
k141_54 1402 2247 aadA6_1 0/0 100 100.0 AF140629 aadA6 Streptomycin
k141_284 1385 1918 ant(2’’)-Ia_13 0/0 100 99.8 DQ176450 ant(2’’)-Ia Gentamicin, Tobramycin
k141_105 102032 102838 aph(3’)-IIb_1 0/0 100 98.8 X90856 aph(3’)-IIb
k141_253 4766 5545 aph(3’)-VIa_1 0/0 100 98.5 X07753 aph(3’)-VIa Amikacin
k141_284 3202 4029 blaOXA-2_1 0/0 100 100.0 DQ112222 blaOXA-2 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin
k141_35 31474 32262 blaOXA-488_1 0/0 100 99.9 CP017969 blaOXA-488
k141_105 88483 89676 blaPAO_2 0/0 100 99.2 FJ666065 blaPAO
k141_284 447 1307 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
k141_156 19454 20092 catB7_1 0/0 100 98.8 AF036933 catB7 Chloramphenicol
k141_23 8616 8813 crpP_1 0/0 100 98.0 HM560971 crpP Ciprofloxacin
k141_273 180 587 fosA_4 0/0 100 99.0 ACWU01000146 fosA Fosfomycin
k141_201 745 1611 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_284 1976 2764 aadA5 0/0 100.0 99.6 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
k141_54 1402 2247 aadA6 0/0 100.0 100.0 AM087411:1611-2457 aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa aminoglycoside
k141_284 1385 1918 ANT(2’’)-Ia 0/0 100.0 99.2 AF078527:3769-4303 Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii aminoglycoside
k141_105 102032 102838 APH(3’)-IIb 0/0 100.0 98.8 X90856:387-1194 APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa aminoglycoside
k141_253 4766 5545 APH(3’)-VIa 0/0 100.0 98.5 X07753:102-882 APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii aminoglycoside
k141_176 5784 5945 ArmR 0/0 100.0 96.9 AE004091.2:4165880-4165718 ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_132 20178 22166 arnA 0/0 100.0 99.5 AE004091.2:3982020-3984009 arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. peptide
k141_166 88594 90027 basS 0/0 100.0 98.7 JQ340365:0-1434 Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) peptide
k141_105 119543 120751 bcr-1 0/0 100.0 99.4 CP012901.1:5980365-5979156 Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene bicyclomycin
k141_23 8616 8813 CrpP 0/0 100.0 98.0 HM560971.1:119269-119071 A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. fluoroquinolone
k141_273 180 587 fosA 0/0 100.0 99.5 AE004091.2:1221690-1222098 An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. fosfomycin
k141_68 19632 20783 MexA 0/0 100.0 99.3 AE004091.2:472023-473175 MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_68 16476 19616 MexB 0/0 100.0 99.3 L11616:1569-4710 MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_160 6270 7433 MexC 0/0 100.0 99.4 U57969:294-1458 MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_160 7461 10592 MexD 2/2 100.0 99.3 U57969:1485-4617 MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_113 28340 29584 MexE 0/0 100.0 99.4 AE004091.2:2808742-2809987 MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_113 29606 32794 MexF 0/0 100.0 99.7 AE004091.2:2810008-2813197 MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). diaminopyrimidine, fluoroquinolone, phenicol
k141_86 5193 5639 mexG 0/0 100.0 99.8 AE004091.2:4705955-4706402 MexG is a membrane protein required for MexGHI-OpmD efflux activity. acridine_dye, fluoroquinolone, tetracycline
k141_86 5647 6759 mexH 0/0 100.0 99.5 AE004091.2:4706409-4707522 MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_86 6772 9861 mexI 0/0 100.0 99.6 AE004091.2:4707534-4710624 MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_236 6660 7763 mexJ 0/0 100.0 99.0 AE004091.2:4120373-4119269 mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_236 7768 10845 mexK 0/0 100.0 99.5 AE004091.2:4119265-4116187 mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. macrolide, tetracycline, triclosan
k141_236 5926 6564 mexL 0/0 100.0 99.8 AE004091.2:4120468-4121107 MexL is a specific repressor of mexJK transcription and autoregulates its own expression. macrolide, tetracycline, triclosan
k141_78 7999 9156 mexM 0/0 100.0 99.4 AB219523.1:21-1179 mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. phenicol
k141_78 9153 12263 mexN 0/0 100.0 99.2 AB219523.1:1175-4286 MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. phenicol
k141_142 18206 19363 mexP 0/0 100.0 98.8 AB219524.1:22-1180 MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_142 19360 22521 mexQ 0/0 100.0 99.2 AB219524.1:1176-4338 MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_83 57766 58896 mexV 0/0 100.0 98.7 AE004091.2:4903465-4904596 MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_83 54659 57715 mexW 0/0 100.0 99.5 NC_002516.2:4904646-4907703 MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline
k141_122 9842 11020 mexX 8/11 99.9 98.0 AB015853:145-1315 MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_122 6689 9826 mexY 8/9 99.8 98.6 AB015853:1330-4471 MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_113 73614 74894 MuxA 0/0 100.0 99.3 AE004091.2:2855291-2854010 MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_113 70486 73617 MuxB 0/0 100.0 99.5 AE004091.2:2854014-2850882 MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_113 67379 70489 MuxC 0/0 100.0 99.1 AE004091.2:2850886-2847775 MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. aminocoumarin, macrolide, monobactam, tetracycline
k141_113 65886 67382 OpmB 0/0 100.0 99.3 AE004091.2:2847779-2846282 OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. aminocoumarin, macrolide, monobactam, tetracycline
k141_86 9858 11321 opmD 0/0 100.0 99.0 AE004091.2:4710620-4712084 OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. acridine_dye, fluoroquinolone, tetracycline
k141_142 22518 23993 opmE 0/0 100.0 99.2 AB219524.1:4334-5810 opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline
k141_172 130502 131950 OpmH 0/0 100.0 99.2 AE004091.2:5584100-5585549 OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. triclosan
k141_160 10598 12037 OprJ 0/0 100.0 99.0 U57969:4622-6062 OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline
k141_68 15017 16474 OprM 0/0 100.0 98.8 AE004091.2:476332-477790 OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline
k141_113 32791 34209 OprN 0/0 100.0 99.3 AE004091.2:2813193-2814612 OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. diaminopyrimidine, fluoroquinolone, phenicol
k141_284 3202 4029 OXA-2 0/0 100.0 100.0 M95287.4:2455-3283 OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. carbapenem, cephalosporin, penam
k141_35 31474 32262 OXA-488 0/0 100.0 100.0 SMRY02000082.1:18008-17219 Assigned by Lahey’s list of beta-lactamases no accessions or other information available cephalosporin, penam
k141_105 88483 89676 PDC-2 0/0 100.0 99.6 FJ666064:0-1194 PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. carbapenem, cephalosporin, monobactam
k141_99 6092 7525 PmpM 0/0 100.0 99.6 AE004091.2:1473980-1472546 PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. aminoglycoside, benzalkonium_chloride, fluoroquinolone
k141_156 19454 20092 Pseudomonas_aeruginosa_catB7 0/0 100.0 98.8 NC_002516.2:780101-779462 catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa phenicol
k141_149 16360 16692 Pseudomonas_aeruginosa_emrE 0/0 100.0 98.8 AE004091.2:5606102-5606435 EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. aminoglycoside
k141_260 17494 17964 Pseudomonas_aeruginosa_soxR 0/0 100.0 99.4 AE004091.2:2503895-2503424 SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
k141_201 772 1611 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
k141_284 447 1307 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
k141_90 120069 121220 TriA 0/0 100.0 99.0 AE004091.2:177306-178458 TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_90 119002 120072 TriB 0/0 100.0 99.3 AE004091.2:178454-179525 TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. triclosan
k141_90 115958 119005 TriC 0/0 100.0 99.3 AE004091.2:179521-182569 TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_284 1976 2764 (AGly)aadA5 0/0 100 99.6 AF137361:64-852 (AGly)aadA5 NA
k141_54 1402 2247 (AGly)aadA6 0/0 100 100.0 AF140629:61-906 (AGly)aadA6 NA
k141_284 1385 1918 (AGly)aadB 0/0 100 99.2 JQ690540:4275-4808 (AGly)aadB NA
k141_105 102032 102838 (AGly)aph(3’’)-IIb 0/0 100 98.8 X90856:388-1194 (AGly)aph(3’’)-IIb NA
k141_253 4766 5545 (AGly)aphA6 0/0 100 98.3 JF949760:695-1474 (AGly)aphA6 NA
k141_284 3202 4029 (Bla)blaOXA-2 0/0 100 100.0 HM131431:1-828 (Bla)blaOXA-2 NA
k141_35 31474 32262 (Bla)blaOXA-50 0/0 100 98.5 AM117128:1-789 (Bla)blaOXA-50 NA
k141_105 88483 89676 (Bla)blaPDC-195 0/0 100 99.2 MF098287:1-1194 (Bla)blaPDC-195 NA
k141_284 447 1307 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
k141_23 8616 8813 (Flq)crpP 0/0 100 98.0 NG_062203:101-298 (Flq)crpP NA
k141_105 119543 120751 (Phe)bcr1 0/0 100 99.4 NG_055652:101-1309 (Phe)bcr1 NA
k141_156 19454 20092 (Phe)catB7 0/0 100 98.8 AF036933:177-815 (Phe)catB7 NA
k141_201 772 1611 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_284 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_54 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_284 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_105 102032 102838 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_253 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_284 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_35 31474 32262 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_105 88483 89705 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_284 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_156 19454 20092 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_23 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_273 180 587 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_201 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
k141_284 1976 2764 aadA5 0/0 100 99.9 NG_047358.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 STREPTOMYCIN
k141_54 1402 2247 aadA6 0/0 100 100.0 NG_047359.1 ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 STREPTOMYCIN
k141_284 1385 1918 ant(2’’)-Ia 0/0 100 99.8 NG_047389.1 aminoglycoside nucleotidyltransferase ANT(2’’)-Ia GENTAMICIN, KANAMYCIN, TOBRAMYCIN
k141_105 102032 102838 aph(3’)-IIb 0/0 100 98.8 NG_047424.1 aminoglycoside O-phosphotransferase APH(3’)-IIb KANAMYCIN
k141_253 4766 5545 aph(3’)-VIa 0/0 100 98.5 NG_047448.1 aminoglycoside O-phosphotransferase APH(3’)-VIa AMIKACIN, KANAMYCIN
k141_284 3202 4029 blaOXA-2 0/0 100 100.0 NG_049496.1 oxacillin-hydrolyzing class D beta-lactamase OXA-2 BETA-LACTAM
k141_35 31474 32262 blaOXA-488 0/0 100 99.9 NG_049768.1 OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 BETA-LACTAM
k141_105 88483 89705 blaPDC-374 1/8 100 98.8 NG_065926.1 class C beta-lactamase PDC-374 CEPHALOSPORIN
k141_284 447 1307 blaTEM-1 0/0 100 100.0 NG_050145.1 class A broad-spectrum beta-lactamase TEM-1 BETA-LACTAM
k141_156 19454 20092 catB7 0/0 100 98.8 NG_047614.1 type B-4 chloramphenicol O-acetyltransferase CatB7 CHLORAMPHENICOL
k141_23 8616 8813 crpP 0/0 100 98.0 NG_062203.1 ciprofloxacin resistance protein CrpP FLUOROQUINOLONE
k141_273 180 587 fosA-354827590 0/0 100 99.0 NG_047883.1 FosA family fosfomycin resistance glutathione transferase FOSFOMYCIN
k141_201 772 1611 sul1 0/0 100 100.0 NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
pseudomonas.gbk
Resfinder
## [1] "No antibiotic resistance genes from Resfinder database were found"
CARD
## [1] "No antibiotic resistance genes from CARD database were found"
ARG-ANNOT
## [1] "No antibiotic resistance genes from ARG-ANNOT database were found"
NCBI
## [1] "No antibiotic resistance genes from NCBI database were found"
MEGARES
## [1] "No antibiotic resistance genes from MEGARES database were found"


Summary figures

Presence/Absence of antibiotic resistance genes (coverage and identity > 90%) on each sample

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Resfinder
CARD
ARG-ANNOT
NCBI
MEGARES


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Plasmid Profiling


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Gaps Gaps in subject (genome) and query (antibiotic resistance gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product


Select sample

15_pio
## [1] "NO PLASMID FOUND!!"
120_pio
Contig Start End Gene Gaps Coverage Identity Accession Product
k141_177 410 1205 IncQ1_1 0/0 100 100 M28829.1 IncQ1_1__M28829.1
123_pio
Contig Start End Gene Gaps Coverage Identity Accession Product
k141_80 410 1205 IncQ1_1 0/0 100 100 M28829.1 IncQ1_1__M28829.1
129_pio
Contig Start End Gene Gaps Coverage Identity Accession Product
k141_69 410 1205 IncQ1_1 0/0 100 100 M28829.1 IncQ1_1__M28829.1
159_pio
Contig Start End Gene Gaps Coverage Identity Accession Product
k141_116 5487 6282 IncQ1_1 0/0 100 100 M28829.1 IncQ1_1__M28829.1
165_pio
Contig Start End Gene Gaps Coverage Identity Accession Product
k141_79 410 1205 IncQ1_1 0/0 100 100 M28829.1 IncQ1_1__M28829.1
166_pio
Contig Start End Gene Gaps Coverage Identity Accession Product
k141_80 5487 6282 IncQ1_1 0/0 100 100 M28829.1 IncQ1_1__M28829.1
168_pio
Contig Start End Gene Gaps Coverage Identity Accession Product
k141_253 410 1205 IncQ1_1 0/0 100 100 M28829.1 IncQ1_1__M28829.1
pseudomonas.gbk
## [1] "NO PLASMID FOUND!!"


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Virulence Factor Determination


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product


Select the sample

15_pio
Contig Start End Strand Gene Coverage Identity Accession Product
k141_151 117203 118372 - alg44 100.0 99.7 NP_252232 (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_151 118455 119939 - alg8 100.0 99.7 NP_252231 (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_151 104738 106183 - algA 100.0 99.5 NP_252241 (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_148 67396 68745 - algB 100.0 99.8 NP_254170 (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_167 104564 105955 + algC 100.0 99.9 NP_254009 (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1]
k141_151 120079 121389 - algD 100.0 99.8 NP_252230 (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_151 114293 115765 - algE 100.0 99.7 NP_252234 (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_151 106380 107030 - algF 100.0 99.7 NP_252240 (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_151 112641 114272 - algG 100.0 99.7 NP_252235 (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_151 108293 109855 - algI 100.0 99.6 NP_252238 (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_151 107103 108278 - algJ 100.0 99.5 NP_252239 (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_151 115762 117189 - algK 100.0 99.7 NP_252233 (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_151 110097 111200 - algL 100.0 99.7 NP_252237 (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_55 31430 32476 - algP/algR3 98.9 96.7 NP_253940 (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_55 33293 33775 - algQ 100.0 98.8 NP_253942 (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_55 38919 39665 - algR 100.0 99.3 NP_253948 (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_110 29145 29726 + algU 100.0 99.1 NP_249453 (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_162 22456 23625 - algW 100.0 99.1 NP_253136 (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_151 111204 112628 - algX 100.0 99.5 NP_252236 (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_55 39670 40746 - algZ 100.0 99.6 NP_253949 (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_122 6210 7649 + aprA 100.0 99.3 NP_249940 (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1]
k141_74 69252 76682 + chpA 99.9 98.7 NP_249104 (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 76675 77706 + chpB 100.0 99.0 NP_249105 (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 77703 78209 + chpC 100.0 98.8 NP_249106 (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 78217 79011 + chpD 100.0 99.2 NP_249107 (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 79087 79698 + chpE 100.0 98.9 NP_249108 (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_105 116819 119527 - clpV1 100.0 99.2 NP_248780 (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_154 2616 3965 + dotU1 100.0 99.7 NP_248768 (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_120 5621 6994 - exoT 100.0 99.2 NP_248734 (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1]
k141_181 22582 24647 + exoU 100.0 99.9 AAC16023 (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103]
k141_106 29891 31026 + exoY 99.9 99.0 NP_250881 (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]
k141_114 72186 73022 - exsA 100.0 99.6 NP_250404 (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 73320 73733 - exsB 100.0 98.3 NP_250403 (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 73996 74433 - exsC 100.0 98.4 NP_250401 (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 71258 72088 - exsD 100.0 98.8 NP_250405 (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 73742 73987 - exsE 100.0 97.2 NP_250402 (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_72 94646 95155 + fimT 100.0 97.1 NP_253239 (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_72 95261 95767 + fimU 100.0 99.2 NP_253240 (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_190 19722 22496 - fimV 100.0 98.3 NP_251805 (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_111 39779 40621 - fleN 100.0 98.9 NP_250145 (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 58405 59877 - fleQ 100.0 99.2 NP_249788 (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 55664 57079 - fleR 99.6 98.9 NP_249790 (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 57084 58292 - fleS 100.0 99.1 NP_249789 (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_45 17735 18433 - flgA 100.0 98.3 NP_252040 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_175 86285 86692 - flgB 100.0 100.0 NP_249768 (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_175 85839 86279 - flgC 100.0 99.8 NP_249769 (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 85113 85826 - flgD 100.0 99.6 NP_249770 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 83697 85085 - flgE 100.0 99.4 NP_249771 (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 82731 83480 - flgF 100.0 99.3 NP_249772 (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 81899 82684 - flgG 100.0 99.5 NP_249773 (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 81158 81853 - flgH 100.0 98.8 NP_249774 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 80037 81146 - flgI 100.0 99.4 NP_249775 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 78824 80026 - flgJ 100.0 99.1 NP_249776 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 76757 78805 - flgK 99.7 86.7 NP_249777 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_45 17267 17590 - flgM 100.0 98.2 NP_252041 (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_45 16742 17212 - flgN 100.0 98.7 NP_252042 (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_111 42133 44256 - flhA 100.0 99.3 NP_250143 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 47101 48237 - flhB 100.0 99.7 NP_250140 (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 40760 42049 - flhF 100.0 99.5 NP_250144 (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 39039 39782 - fliA 100.0 99.7 NP_250146 (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_175 55088 55417 - fliE 100.0 99.7 NP_249791 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 53269 55065 - fliF 100.0 99.5 NP_249792 (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 52247 53263 - fliG 100.0 99.6 NP_249793 (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 51439 52245 - fliH 100.0 99.1 NP_249794 (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 50094 51449 - fliI 100.0 99.1 NP_249795 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_175 49637 50080 - fliJ 100.0 99.1 NP_249796 (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 52793 54076 - fliK 100.0 98.2 NP_250132 (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_111 52028 52549 - fliL 100.0 100.0 NP_250133 (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_111 51049 52020 - fliM 100.0 99.9 NP_250134 (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 50548 51021 - fliN 100.0 98.5 NP_250135 (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 50094 50546 - fliO 100.0 98.9 NP_250136 (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 49330 50097 - fliP 100.0 99.3 NP_250137 (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 49016 49285 - fliQ 100.0 99.6 NP_250138 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 48240 49016 - fliR 100.0 99.2 NP_250139 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_66 4635 6797 - fptA 100.0 99.3 NP_252911 (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_105 123910 124398 - hcp1 100.0 100.0 NP_248775 (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_105 126590 127624 - hsiA1 100.0 99.8 NP_248772 (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_105 125983 126501 - hsiB1/vipA 100.0 99.8 NP_248773 (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_105 124474 125970 - hsiC1/vipB 100.0 99.5 NP_248774 (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_105 122897 123742 - hsiE1 100.0 98.7 NP_248776 (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_105 122386 122895 - hsiF1 100.0 98.8 NP_248777 (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_105 120530 122389 - hsiG1 100.0 99.1 NP_248778 (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_105 119520 120566 - hsiH1 100.0 98.8 NP_248779 (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_154 1275 2609 + hsiJ1 100.0 99.6 NP_248769 (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_154 4187 7495 + icmF1/tssM1 100.0 99.1 NP_248767 (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_73 151766 153022 + lasA 100.0 98.0 NP_250562 (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1]
k141_39 137 1633 - lasB 100.0 98.5 NP_252413 (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1]
k141_111 64713 65318 - lasI 100.0 99.8 NP_250123 (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_154 795 1259 + lip1 100.0 100.0 NP_248770 (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_116 8982 9200 - mbtH-like 100.0 100.0 NP_251102 (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_107 25830 26681 + motA 100.0 98.2 NP_253641 (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_107 26701 27744 + motB 100.0 99.3 NP_253640 (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_111 33304 34044 - motC 100.0 99.2 NP_250151 (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_111 32401 33291 - motD 100.0 98.7 NP_250152 (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_151 137255 138220 + motY 100.0 99.3 NP_252216 (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_110 29758 30342 + mucA 100.0 99.1 NP_249454 (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_110 30351 31301 + mucB 100.0 99.0 NP_249455 (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_110 31298 31753 + mucC 100.0 99.6 NP_249456 (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_110 31793 33217 + mucD 100.0 98.9 NP_249457 (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_44 10288 10557 + mucE 100.0 98.5 NP_252722 (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_186 39448 40800 - mucP 100.0 99.3 NP_252339 (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_82 15756 17186 + pchA 100.0 99.0 NP_252921 (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_82 15454 15759 + pchB 100.0 99.7 NP_252920 (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_82 14699 15454 + pchC 100.0 99.3 NP_252919 (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_82 13059 14702 + pchD 100.0 99.2 NP_252918 (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_82 7429 11745 - pchE 100.0 98.9 NP_252916 (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_82 2003 7432 - pchF 100.0 98.8 NP_252915 (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_82 957 2006 - pchG 100.0 98.9 NP_252914 (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_66 6889 8613 - pchI 100.0 99.0 NP_252912 (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_82 11939 12829 - pchR 100.0 99.0 NP_252917 (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_114 81946 82224 - pcr1 100.0 99.6 NP_250390 (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 81588 81959 - pcr2 100.0 98.9 NP_250391 (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 81226 81591 - pcr3 100.0 98.4 NP_250392 (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 80892 81221 - pcr4 100.0 99.1 NP_250393 (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 78775 80895 - pcrD 100.0 99.0 NP_250394 (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 78020 78316 - pcrG 100.0 99.7 NP_250396 (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 76611 77117 - pcrH 100.0 99.2 NP_250398 (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 78344 78778 - pcrR 100.0 99.3 NP_250395 (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 77126 78010 - pcrV 100.0 99.0 NP_250397 (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_143 184 672 + phzB1 100.0 98.6 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_144 244 678 + phzB1 89.0 89.7 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_46 4045 5262 - phzC1 100.0 99.3 NP_252901 (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_46 3425 4048 - phzD1 100.0 99.2 NP_252902 (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_46 1545 3428 - phzE1 100.0 99.2 NP_252903 (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_46 695 1531 - phzF1 100.0 99.4 NP_252904 (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_46 25 669 - phzG1 100.0 99.8 NP_252906 (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_154 30174 32006 - phzH 100.0 99.1 NP_248741 (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_78 1051 2055 + phzM 100.0 99.1 NP_252898 (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_66 297 1505 + phzS 100.0 98.4 NP_252907 (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_72 66815 68515 + pilB 100.0 88.4 NP_253216 (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_72 101569 101994 + pilE 100.0 99.5 NP_253246 (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_171 16062 16820 + pilF 100.0 98.8 NP_252494 (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 64765 65172 + pilG 100.0 100.0 NP_249099 (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 65219 65584 + pilH 100.0 99.7 NP_249100 (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 65635 66171 + pilI 100.0 99.8 NP_249101 (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 66256 68304 + pilJ 100.0 99.6 NP_249102 (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 68365 69240 + pilK 100.0 99.3 NP_249103 (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_199 26994 28058 - pilM 100.0 99.5 NP_253731 (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_199 26398 26994 - pilN 100.0 99.2 NP_253730 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_199 25778 26401 - pilO 100.0 98.4 NP_253729 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_199 25257 25781 - pilP 100.0 99.4 NP_253728 (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_199 23059 25203 - pilQ 100.0 97.2 NP_253727 (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_72 92034 93371 + pilR 100.0 99.4 NP_253237 (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_72 90427 92019 + pilS 100.0 99.2 NP_253236 (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 51694 52728 + pilT 100.0 99.4 NP_249086 (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 52906 54054 + pilU 100.0 99.8 NP_249087 (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_72 95758 96315 + pilV 100.0 99.3 NP_253241 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_72 96312 97136 + pilW 100.0 98.9 NP_253242 (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_72 97133 97720 + pilX 100.0 99.3 NP_253243 (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_72 97732 101223 + pilY1 99.6 91.6 NP_253244 (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_72 101225 101572 + pilY2 100.0 99.1 NP_253245 (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_131 38195 40387 + plcH 100.0 99.6 NP_249535 (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1]
k141_114 75458 76630 - popB 100.0 99.5 NP_250399 (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 74559 75446 - popD 100.0 97.3 NP_250400 (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 82205 83071 - popN 100.0 99.4 NP_250389 (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_154 8918 12016 + ppkA 100.0 99.5 NP_248764 (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_154 8182 8910 + pppA 100.0 99.6 NP_248765 (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_114 70802 71224 - pscB 100.0 99.3 NP_250406 (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 69000 70802 - pscC 100.0 99.3 NP_250407 (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 67700 68998 - pscD 100.0 99.1 NP_250408 (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 67534 67737 - pscE 100.0 98.0 NP_250409 (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 67274 67531 - pscF 100.0 99.6 NP_250410 (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 66924 67271 - pscG 100.0 99.1 NP_250411 (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 66496 66927 - pscH 100.0 99.1 NP_250412 (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 66158 66496 - pscI 100.0 99.7 NP_250413 (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 65415 66161 - pscJ 100.0 99.5 NP_250414 (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 64786 65406 - pscK 99.0 97.8 NP_250415 (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 64163 64807 - pscL 100.0 98.8 NP_250416 (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 83262 84584 + pscN 100.0 99.5 NP_250388 (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 84581 85057 + pscO 100.0 99.4 NP_250387 (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 85045 86127 + pscP 96.8 94.8 NP_250386 (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 86124 87053 + pscQ 100.0 99.1 NP_250385 (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 87050 87703 + pscR 100.0 99.4 NP_250384 (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 87706 87972 + pscS 100.0 100.0 NP_250383 (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 87969 88757 + pscT 100.0 99.1 NP_250382 (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_114 88754 89803 + pscU 100.0 98.9 NP_250381 (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_187 2472 3410 - ptxR 100.0 98.7 NP_250948 (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_5 46291 47277 + pvcA 100.0 99.4 NP_250944 (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_187 226 1728 + pvcC 100.0 98.9 NP_250946 (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_187 1721 2367 + pvcD 99.8 97.8 NP_250947 (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_65 6174 7505 - pvdA 100.0 83.3 NP_251076 (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_65 19465 20292 - pvdF 100.0 82.2 NP_251086 (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_116 36321 37085 - pvdG 100.0 98.6 NP_251115 (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_116 9278 10687 - pvdH 100.0 99.2 NP_251103 (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_116 23219 36247 - pvdL 100.0 99.1 NP_251114 (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_65 15862 17208 + pvdM 99.8 95.6 NP_251083 (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_65 17231 18514 + pvdN 100.0 99.2 NP_251084 (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_65 18543 19397 + pvdO 100.0 98.1 NP_251085 (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_65 14002 15648 - pvdP 99.8 85.0 NP_251082 (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_65 3763 6051 - pvdQ 100.0 99.3 NP_251075 (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_116 37728 38291 + pvdS 100.0 97.7 NP_251116 (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_180 7314 8201 + rhlA 100.0 99.7 NP_252169 (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_180 8267 9547 + rhlB 100.0 99.8 NP_252168 (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_175 24400 25377 + rhlC 100.0 98.9 NP_249821 (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1]
k141_93 23320 23925 - rhlI 100.0 98.7 NP_252166 (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_154 7492 8172 + tagF/pppB 100.0 98.8 NP_248766 (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_154 15698 16624 + tagQ 100.0 95.9 NP_248760 (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_154 13924 15636 + tagR 100.0 99.4 NP_248761 (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_154 12732 13931 + tagS 100.0 99.3 NP_248762 (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_154 12013 12732 + tagT 100.0 98.3 NP_248763 (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_175 4973 6889 + toxA 100.0 98.8 NP_249839 (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1]
k141_73 121425 121889 - tse1 100.0 99.8 NP_250535 (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_80 6310 6786 + tse2 100.0 98.7 NP_251392 (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_180 815 2041 - tse3 100.0 99.2 NP_252174 (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_105 114841 116772 - vgrG1a 100.0 99.2 NP_248781 (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_105 109895 112120 - vgrG1b 100.0 98.7 NP_248785 (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_102 14080 15357 - waaA 100.0 99.2 NP_253675 (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_102 40045 41112 - waaC 100.0 99.2 NP_253698 (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_102 41109 42146 - waaF 100.0 99.5 NP_253699 (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_102 38927 40048 - waaG 100.0 99.2 NP_253697 (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_102 38124 38930 - waaP 100.0 99.3 NP_253696 (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_72 69743 70615 + xcpA/pilD 100.0 99.3 NP_253218 (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_190 7929 8636 + xcpP 100.0 99.7 NP_251794 (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 8641 10617 + xcpQ 100.0 99.0 NP_251795 (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 6201 7709 - xcpR 100.0 99.5 NP_251793 (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 4984 6201 - xcpS 100.0 99.3 NP_251792 (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 4533 4979 - xcpT 100.0 99.3 NP_251791 (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 4008 4526 - xcpU 100.0 98.5 NP_251790 (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 3622 4011 - xcpV 100.0 99.2 NP_251789 (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 2921 3625 - xcpW 98.7 98.3 NP_251788 (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 1923 2924 - xcpX 100.0 99.1 NP_251787 (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 778 1926 - xcpY 100.0 98.3 NP_251786 (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_190 252 776 - xcpZ 100.0 99.2 NP_251785 (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
120_pio
Contig Start End Strand Gene Coverage Identity Accession Product
k141_178 3931 5100 + alg44 100.0 99.7 NP_252232 (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_178 2364 3848 + alg8 100.0 99.7 NP_252231 (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_178 16120 17565 + algA 100.0 99.5 NP_252241 (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_256 78523 79872 + algB 100.0 99.8 NP_254170 (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_241 966 2357 - algC 100.0 99.9 NP_254009 (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1]
k141_178 914 2224 + algD 100.0 99.8 NP_252230 (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_178 6538 8010 + algE 100.0 99.7 NP_252234 (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_178 15273 15923 + algF 100.0 99.7 NP_252240 (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_178 8031 9662 + algG 100.0 99.7 NP_252235 (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_178 12448 14010 + algI 100.0 99.6 NP_252238 (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_178 14025 15200 + algJ 100.0 99.5 NP_252239 (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_178 5114 6541 + algK 100.0 99.7 NP_252233 (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_178 11103 12206 + algL 100.0 99.7 NP_252237 (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_219 12266 13146 + algP/algR3 82.9 94.1 NP_253940 (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_219 10967 11449 + algQ 100.0 98.8 NP_253942 (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_219 5077 5823 + algR 100.0 99.3 NP_253948 (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_84 38082 38663 - algU 100.0 99.1 NP_249453 (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_127 22441 23610 - algW 100.0 99.1 NP_253136 (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_178 9675 11099 + algX 100.0 99.5 NP_252236 (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_219 3996 5072 + algZ 100.0 99.6 NP_253949 (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_258 8055 9494 - aprA 100.0 99.3 NP_249940 (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1]
k141_175 25383 32813 + chpA 99.9 98.7 NP_249104 (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 32806 33837 + chpB 100.0 99.0 NP_249105 (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 33834 34340 + chpC 100.0 98.8 NP_249106 (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 34348 35142 + chpD 100.0 99.2 NP_249107 (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 35218 35829 + chpE 100.0 98.9 NP_249108 (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_4 41823 44531 + clpV1 100.0 99.2 NP_248780 (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 28686 30035 - dotU1 100.0 99.7 NP_248768 (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 5611 6984 - exoT 100.0 99.2 NP_248734 (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1]
k141_20 1069 3132 + exoU 100.0 100.0 AAC16023 (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103]
k141_0 30914 32049 + exoY 99.9 99.0 NP_250881 (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]
k141_195 24490 25326 - exsA 100.0 99.6 NP_250404 (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 25624 26037 - exsB 100.0 98.3 NP_250403 (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 26300 26737 - exsC 100.0 98.4 NP_250401 (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 23562 24392 - exsD 100.0 98.8 NP_250405 (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 26046 26291 - exsE 100.0 97.2 NP_250402 (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_4 31901 33358 - fha1 97.6 96.7 NP_248771 (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_160 15730 16239 + fimT 100.0 97.1 NP_253239 (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_160 16345 16851 + fimU 100.0 99.2 NP_253240 (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 19722 22496 - fimV 100.0 98.3 NP_251805 (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_209 29144 29986 + fleN 100.0 98.9 NP_250145 (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 37441 38913 + fleQ 100.0 99.2 NP_249788 (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 40239 41654 + fleR 99.6 98.9 NP_249790 (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 39026 40234 + fleS 100.0 99.1 NP_249789 (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_76 26352 27050 + flgA 100.0 98.3 NP_252040 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_273 10627 11034 + flgB 100.0 100.0 NP_249768 (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_273 11040 11480 + flgC 100.0 99.8 NP_249769 (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 11493 12206 + flgD 100.0 99.6 NP_249770 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 12234 13622 + flgE 100.0 99.4 NP_249771 (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 13839 14588 + flgF 100.0 99.3 NP_249772 (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 14635 15420 + flgG 100.0 99.5 NP_249773 (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 15466 16161 + flgH 100.0 98.8 NP_249774 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 16173 17282 + flgI 100.0 99.4 NP_249775 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 17293 18495 + flgJ 100.0 99.1 NP_249776 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 18514 20562 + flgK 99.7 86.7 NP_249777 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_76 27195 27518 + flgM 100.0 98.2 NP_252041 (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_76 27573 28043 + flgN 100.0 98.7 NP_252042 (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_209 25509 27632 + flhA 100.0 99.3 NP_250143 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_209 21528 22664 + flhB 100.0 99.7 NP_250140 (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_209 27716 29005 + flhF 100.0 99.5 NP_250144 (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_209 29983 30726 + fliA 100.0 99.7 NP_250146 (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_273 41901 42230 + fliE 100.0 99.7 NP_249791 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 42253 44049 + fliF 100.0 99.5 NP_249792 (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 44055 45071 + fliG 100.0 99.6 NP_249793 (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 45073 45879 + fliH 100.0 99.1 NP_249794 (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 45869 47224 + fliI 100.0 99.1 NP_249795 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_273 47238 47681 + fliJ 100.0 99.1 NP_249796 (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_209 15689 16972 + fliK 100.0 98.2 NP_250132 (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_209 17216 17737 + fliL 100.0 100.0 NP_250133 (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_209 17745 18716 + fliM 100.0 99.9 NP_250134 (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_209 18744 19217 + fliN 100.0 98.5 NP_250135 (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_209 19219 19671 + fliO 100.0 98.9 NP_250136 (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_209 19668 20435 + fliP 100.0 99.3 NP_250137 (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_209 20480 20749 + fliQ 100.0 99.6 NP_250138 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_209 20749 21525 + fliR 100.0 99.2 NP_250139 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_111 2709 4871 + fptA 100.0 99.3 NP_252911 (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_4 36952 37440 + hcp1 100.0 100.0 NP_248775 (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 33726 34760 + hsiA1 100.0 99.8 NP_248772 (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 34849 35367 + hsiB1/vipA 100.0 99.8 NP_248773 (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 35380 36876 + hsiC1/vipB 100.0 99.5 NP_248774 (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 37608 38453 + hsiE1 100.0 98.7 NP_248776 (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 38455 38964 + hsiF1 100.0 98.8 NP_248777 (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 38961 40820 + hsiG1 100.0 99.2 NP_248778 (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 40784 41830 + hsiH1 100.0 98.8 NP_248779 (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 30042 31376 - hsiJ1 100.0 99.6 NP_248769 (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 25156 28464 - icmF1/tssM1 100.0 99.1 NP_248767 (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_96 35846 37102 - lasA 100.0 98.0 NP_250562 (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1]
k141_215 15801 17297 + lasB 100.0 98.5 NP_252413 (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1]
k141_209 4447 5052 + lasI 100.0 99.8 NP_250123 (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_4 31392 31856 - lip1 100.0 100.0 NP_248770 (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_105 8982 9200 - mbtH-like 100.0 100.0 NP_251102 (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_208 21171 22022 - motA 100.0 98.2 NP_253641 (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_208 20108 21151 - motB 100.0 99.3 NP_253640 (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_209 35721 36461 + motC 100.0 99.2 NP_250151 (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_209 36474 37364 + motD 100.0 98.7 NP_250152 (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_185 29311 30276 - motY 100.0 99.3 NP_252216 (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_84 37466 38050 - mucA 100.0 99.1 NP_249454 (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_84 36507 37457 - mucB 100.0 99.0 NP_249455 (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_84 36055 36510 - mucC 100.0 99.6 NP_249456 (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_84 34591 36015 - mucD 100.0 98.9 NP_249457 (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_239 128010 128279 - mucE 100.0 98.5 NP_252722 (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_178 125984 127336 - mucP 100.0 99.3 NP_252339 (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_274 6322 7752 - pchA 100.0 99.0 NP_252921 (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_274 7749 8054 - pchB 100.0 99.7 NP_252920 (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_274 8054 8809 - pchC 100.0 99.3 NP_252919 (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_274 8806 10449 - pchD 100.0 99.2 NP_252918 (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_274 11763 16079 + pchE 100.0 98.9 NP_252916 (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_274 16076 20566 + pchF 82.7 98.9 NP_252915 (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_89 895 1944 - pchG 100.0 98.9 NP_252914 (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_111 893 2617 + pchI 100.0 99.0 NP_252912 (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_274 10679 11569 + pchR 100.0 99.0 NP_252917 (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_195 34250 34528 - pcr1 100.0 99.6 NP_250390 (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 33892 34263 - pcr2 100.0 98.9 NP_250391 (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 33530 33895 - pcr3 100.0 98.4 NP_250392 (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 33196 33525 - pcr4 100.0 99.1 NP_250393 (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 31079 33199 - pcrD 100.0 99.0 NP_250394 (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 30324 30620 - pcrG 100.0 99.7 NP_250396 (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 28915 29421 - pcrH 100.0 99.2 NP_250398 (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 30648 31082 - pcrR 100.0 99.3 NP_250395 (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 29430 30314 - pcrV 100.0 99.0 NP_250397 (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 184 672 + phzB1 100.0 98.6 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_71 244 678 + phzB1 89.0 89.7 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_58 4045 5262 - phzC1 100.0 99.3 NP_252901 (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_58 3425 4048 - phzD1 100.0 99.5 NP_252902 (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_58 1545 3428 - phzE1 100.0 99.0 NP_252903 (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_58 695 1531 - phzF1 100.0 99.5 NP_252904 (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_58 25 669 - phzG1 100.0 99.8 NP_252906 (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_4 657 2489 + phzH 100.0 99.1 NP_248741 (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_42 1051 2055 + phzM 100.0 99.1 NP_252898 (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_92 297 1505 + phzS 100.0 98.4 NP_252907 (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_47 24503 26202 - pilB 99.9 88.4 NP_253216 (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_160 22653 23078 + pilE 100.0 99.5 NP_253246 (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_132 16093 16851 + pilF 100.0 98.8 NP_252494 (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 20896 21303 + pilG 100.0 100.0 NP_249099 (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 21350 21715 + pilH 100.0 99.7 NP_249100 (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 21766 22302 + pilI 100.0 99.8 NP_249101 (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 22387 24435 + pilJ 100.0 99.7 NP_249102 (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 24496 25371 + pilK 100.0 99.3 NP_249103 (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_217 33497 34561 - pilM 100.0 99.5 NP_253731 (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_217 32901 33497 - pilN 100.0 99.2 NP_253730 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_217 32281 32904 - pilO 100.0 98.4 NP_253729 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_217 31760 32284 - pilP 100.0 99.4 NP_253728 (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_217 29562 31706 - pilQ 100.0 97.2 NP_253727 (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_160 13118 14455 + pilR 100.0 99.5 NP_253237 (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_160 11511 13103 + pilS 100.0 99.2 NP_253236 (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 7825 8859 + pilT 100.0 99.4 NP_249086 (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_175 9037 10185 + pilU 100.0 99.8 NP_249087 (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_160 16842 17399 + pilV 100.0 99.3 NP_253241 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_160 17396 18220 + pilW 100.0 98.9 NP_253242 (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_160 18217 18804 + pilX 100.0 99.3 NP_253243 (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_160 18816 22307 + pilY1 99.6 91.6 NP_253244 (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_160 22309 22656 + pilY2 100.0 99.1 NP_253245 (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_285 22296 24488 + plcH 100.0 99.6 NP_249535 (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1]
k141_195 27762 28934 - popB 100.0 99.5 NP_250399 (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 26863 27750 - popD 100.0 97.3 NP_250400 (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 34509 35375 - popN 100.0 99.4 NP_250389 (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_4 20635 23733 - ppkA 100.0 99.5 NP_248764 (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 23741 24469 - pppA 100.0 99.6 NP_248765 (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_195 23106 23528 - pscB 100.0 99.3 NP_250406 (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 21304 23106 - pscC 100.0 99.3 NP_250407 (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 20004 21302 - pscD 100.0 99.1 NP_250408 (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 19838 20041 - pscE 100.0 98.0 NP_250409 (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 19578 19835 - pscF 100.0 99.6 NP_250410 (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 19228 19575 - pscG 100.0 99.1 NP_250411 (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 18800 19231 - pscH 100.0 99.3 NP_250412 (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 18462 18800 - pscI 100.0 99.7 NP_250413 (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 17719 18465 - pscJ 100.0 99.5 NP_250414 (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 17090 17710 - pscK 99.0 97.8 NP_250415 (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 16467 17111 - pscL 100.0 98.8 NP_250416 (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 35566 36888 + pscN 100.0 99.5 NP_250388 (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 36885 37361 + pscO 100.0 99.4 NP_250387 (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 37349 38431 + pscP 96.8 94.8 NP_250386 (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 38428 39357 + pscQ 100.0 99.1 NP_250385 (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 39354 40007 + pscR 100.0 99.4 NP_250384 (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 40010 40276 + pscS 100.0 100.0 NP_250383 (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 40273 41061 + pscT 100.0 99.1 NP_250382 (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_195 41058 42107 + pscU 100.0 98.9 NP_250381 (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_49 31405 32343 + ptxR 100.0 98.7 NP_250948 (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_148 1027 2013 - pvcA 100.0 99.4 NP_250944 (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_148 134 1009 - pvcB 100.0 99.0 NP_250945 (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_49 33087 34589 - pvcC 100.0 98.8 NP_250946 (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_49 32448 33094 - pvcD 99.8 97.8 NP_250947 (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_93 60768 62099 - pvdA 100.0 83.3 NP_251076 (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_93 74059 74886 - pvdF 100.0 82.2 NP_251086 (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_105 36321 37085 - pvdG 100.0 98.6 NP_251115 (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_105 9278 10687 - pvdH 100.0 99.2 NP_251103 (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_105 23219 36247 - pvdL 100.0 99.1 NP_251114 (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_93 70456 71802 + pvdM 99.8 95.6 NP_251083 (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_93 71825 73108 + pvdN 100.0 99.2 NP_251084 (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_93 73137 73991 + pvdO 100.0 98.1 NP_251085 (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_93 68596 70242 - pvdP 99.8 85.0 NP_251082 (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_93 58357 60645 - pvdQ 100.0 99.3 NP_251075 (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_105 37728 38291 + pvdS 100.0 97.7 NP_251116 (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_246 7314 8201 + rhlA 100.0 99.7 NP_252169 (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_246 8267 9547 + rhlB 100.0 99.8 NP_252168 (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_240 584 1561 - rhlC 100.0 98.9 NP_249821 (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1]
k141_246 10682 11287 + rhlI 100.0 98.7 NP_252166 (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_4 24479 25159 - tagF/pppB 100.0 98.8 NP_248766 (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 16039 16953 - tagQ 100.0 98.0 NP_248760 (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_4 17015 18727 - tagR 100.0 99.4 NP_248761 (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 18720 19919 - tagS 100.0 99.3 NP_248762 (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 19919 20638 - tagT 100.0 98.3 NP_248763 (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_266 4973 6889 + toxA 100.0 98.8 NP_249839 (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1]
k141_96 66979 67443 + tse1 100.0 99.8 NP_250535 (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_225 6330 6806 + tse2 100.0 98.7 NP_251392 (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_246 815 2041 - tse3 100.0 99.2 NP_252174 (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_4 44578 46509 + vgrG1a 100.0 99.2 NP_248781 (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_4 49230 51455 + vgrG1b 100.0 98.7 NP_248785 (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_121 33811 35088 + waaA 100.0 99.2 NP_253675 (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_121 8056 9123 + waaC 100.0 99.2 NP_253698 (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_121 7022 8059 + waaF 100.0 99.5 NP_253699 (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_121 9120 10241 + waaG 100.0 99.2 NP_253697 (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_121 10238 11044 + waaP 100.0 99.3 NP_253696 (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_47 22403 23275 - xcpA/pilD 100.0 99.3 NP_253218 (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 7929 8636 + xcpP 100.0 99.7 NP_251794 (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 8641 10617 + xcpQ 100.0 99.0 NP_251795 (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 6201 7709 - xcpR 100.0 99.4 NP_251793 (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 4984 6201 - xcpS 100.0 99.3 NP_251792 (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 4533 4979 - xcpT 100.0 99.3 NP_251791 (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 4008 4526 - xcpU 100.0 98.5 NP_251790 (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 3622 4011 - xcpV 100.0 99.2 NP_251789 (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 2921 3625 - xcpW 98.7 98.3 NP_251788 (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 1923 2924 - xcpX 100.0 99.1 NP_251787 (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 778 1926 - xcpY 100.0 98.3 NP_251786 (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_275 252 776 - xcpZ 100.0 99.2 NP_251785 (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
123_pio
Contig Start End Strand Gene Coverage Identity Accession Product
k141_266 47470 48639 + alg44 100.0 99.7 NP_252232 (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_266 45903 47387 + alg8 100.0 99.7 NP_252231 (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_266 59659 61104 + algA 100.0 99.5 NP_252241 (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_51 21494 22843 + algB 100.0 99.8 NP_254170 (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_83 104569 105960 + algC 100.0 99.9 NP_254009 (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1]
k141_266 44453 45763 + algD 100.0 99.8 NP_252230 (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_266 50077 51549 + algE 100.0 99.7 NP_252234 (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_266 58812 59462 + algF 100.0 99.7 NP_252240 (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_266 51570 53201 + algG 100.0 99.7 NP_252235 (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_266 55987 57549 + algI 100.0 99.6 NP_252238 (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_266 57564 58739 + algJ 100.0 99.5 NP_252239 (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_266 48653 50080 + algK 100.0 99.7 NP_252233 (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_266 54642 55745 + algL 100.0 99.7 NP_252237 (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_99 12266 13312 + algP/algR3 98.9 96.7 NP_253940 (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_99 10967 11449 + algQ 100.0 98.8 NP_253942 (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_99 5077 5823 + algR 100.0 99.3 NP_253948 (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_209 37953 38534 - algU 100.0 99.1 NP_249453 (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_1 22461 23630 - algW 100.0 99.1 NP_253136 (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_266 53214 54638 + algX 100.0 99.5 NP_252236 (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_99 3996 5072 + algZ 100.0 99.6 NP_253949 (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_240 5215 6654 - aprA 100.0 99.3 NP_249940 (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1]
k141_66 21333 28763 - chpA 99.9 98.7 NP_249104 (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 20309 21340 - chpB 100.0 99.0 NP_249105 (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 19806 20312 - chpC 100.0 98.8 NP_249106 (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 19004 19798 - chpD 100.0 99.2 NP_249107 (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 18317 18928 - chpE 100.0 98.9 NP_249108 (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_74 19091 21799 + clpV1 100.0 99.2 NP_248780 (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 5954 7303 - dotU1 100.0 99.7 NP_248768 (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_58 28204 29577 - exoT 100.0 99.2 NP_248734 (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1]
k141_22 1069 3132 + exoU 100.0 100.0 AAC16023 (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103]
k141_180 30033 31168 + exoY 99.9 99.0 NP_250881 (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]
k141_168 5490 6326 - exsA 100.0 99.6 NP_250404 (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 6624 7037 - exsB 100.0 98.3 NP_250403 (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 7300 7737 - exsC 100.0 98.4 NP_250401 (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 4562 5392 - exsD 100.0 98.8 NP_250405 (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 7046 7291 - exsE 100.0 97.2 NP_250402 (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_74 9169 10626 - fha1 97.6 96.7 NP_248771 (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_265 63562 64071 - fimT 100.0 97.1 NP_253239 (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 62950 63456 - fimU 100.0 99.2 NP_253240 (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_155 114 2888 - fimV 100.0 98.3 NP_251805 (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_139 18311 19153 - fleN 100.0 98.9 NP_250145 (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 37489 38961 + fleQ 100.0 99.2 NP_249788 (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 40287 41702 + fleR 99.6 98.9 NP_249790 (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 39074 40282 + fleS 100.0 99.1 NP_249789 (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_282 26490 27188 + flgA 100.0 98.3 NP_252040 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_242 10675 11082 + flgB 100.0 100.0 NP_249768 (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_242 11088 11528 + flgC 100.0 99.8 NP_249769 (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 11541 12254 + flgD 100.0 99.6 NP_249770 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 12282 13670 + flgE 100.0 99.4 NP_249771 (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 13887 14636 + flgF 100.0 99.3 NP_249772 (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 14683 15468 + flgG 100.0 99.5 NP_249773 (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 15514 16209 + flgH 100.0 98.8 NP_249774 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 16221 17330 + flgI 100.0 99.4 NP_249775 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 17341 18543 + flgJ 100.0 99.1 NP_249776 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 18562 20610 + flgK 99.7 86.7 NP_249777 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_282 27333 27656 + flgM 100.0 98.2 NP_252041 (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_282 27711 28181 + flgN 100.0 98.7 NP_252042 (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_139 20665 22788 - flhA 100.0 99.3 NP_250143 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_139 25633 26769 - flhB 100.0 99.7 NP_250140 (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_139 19292 20581 - flhF 100.0 99.5 NP_250144 (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_139 17571 18314 - fliA 100.0 99.7 NP_250146 (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_242 41949 42278 + fliE 100.0 99.7 NP_249791 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 42301 44097 + fliF 100.0 99.5 NP_249792 (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 44103 45119 + fliG 100.0 99.6 NP_249793 (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 45121 45927 + fliH 100.0 99.1 NP_249794 (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 45917 47272 + fliI 100.0 99.1 NP_249795 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_242 47286 47729 + fliJ 100.0 99.1 NP_249796 (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_139 31325 32608 - fliK 100.0 98.2 NP_250132 (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_139 30560 31081 - fliL 100.0 100.0 NP_250133 (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_139 29581 30552 - fliM 100.0 99.9 NP_250134 (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_139 29080 29553 - fliN 100.0 98.5 NP_250135 (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_139 28626 29078 - fliO 100.0 98.9 NP_250136 (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_139 27862 28629 - fliP 100.0 99.3 NP_250137 (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_139 27548 27817 - fliQ 100.0 99.6 NP_250138 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_139 26772 27548 - fliR 100.0 99.2 NP_250139 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_109 4635 6797 - fptA 100.0 99.3 NP_252911 (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_74 14220 14708 + hcp1 100.0 100.0 NP_248775 (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 10994 12028 + hsiA1 100.0 99.8 NP_248772 (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 12117 12635 + hsiB1/vipA 100.0 99.8 NP_248773 (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 12648 14144 + hsiC1/vipB 100.0 99.5 NP_248774 (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 14876 15721 + hsiE1 100.0 98.7 NP_248776 (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 15723 16232 + hsiF1 100.0 98.8 NP_248777 (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 16229 18088 + hsiG1 100.0 99.2 NP_248778 (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 18052 19098 + hsiH1 100.0 98.8 NP_248779 (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 7310 8644 - hsiJ1 100.0 99.6 NP_248769 (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_74 2424 5732 - icmF1/tssM1 100.0 99.1 NP_248767 (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_103 30435 31691 + lasA 100.0 98.0 NP_250562 (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1]
k141_92 96 1592 - lasB 100.0 98.4 NP_252413 (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1]
k141_139 43245 43850 - lasI 100.0 99.8 NP_250123 (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_74 8660 9124 - lip1 100.0 100.0 NP_248770 (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_132 8982 9200 - mbtH-like 100.0 100.0 NP_251102 (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_85 21205 22056 - motA 100.0 98.2 NP_253641 (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_85 20142 21185 - motB 100.0 99.3 NP_253640 (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_139 11836 12576 - motC 100.0 99.2 NP_250151 (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_139 10933 11823 - motD 100.0 98.7 NP_250152 (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_266 27622 28587 - motY 100.0 99.3 NP_252216 (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_209 37337 37921 - mucA 100.0 99.1 NP_249454 (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_209 36378 37328 - mucB 100.0 99.0 NP_249455 (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_209 35926 36381 - mucC 100.0 99.6 NP_249456 (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_209 34462 35886 - mucD 100.0 98.9 NP_249457 (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_40 10323 10592 + mucE 100.0 98.5 NP_252722 (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_266 169065 170417 - mucP 100.0 99.3 NP_252339 (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_118 6322 7752 - pchA 100.0 99.0 NP_252921 (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_118 7749 8054 - pchB 100.0 99.7 NP_252920 (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_118 8054 8809 - pchC 100.0 99.3 NP_252919 (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_118 8806 10449 - pchD 100.0 99.2 NP_252918 (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_118 11763 16079 + pchE 100.0 98.9 NP_252916 (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_118 16076 20591 + pchF 83.2 98.9 NP_252915 (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_216 957 2006 - pchG 100.0 98.9 NP_252914 (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_109 6889 8613 - pchI 100.0 99.0 NP_252912 (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_118 10679 11569 + pchR 100.0 99.0 NP_252917 (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_168 15250 15528 - pcr1 100.0 99.6 NP_250390 (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 14892 15263 - pcr2 100.0 98.9 NP_250391 (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 14530 14895 - pcr3 100.0 98.4 NP_250392 (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 14196 14525 - pcr4 100.0 99.1 NP_250393 (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 12079 14199 - pcrD 100.0 99.0 NP_250394 (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 11324 11620 - pcrG 100.0 99.7 NP_250396 (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 9915 10421 - pcrH 100.0 99.2 NP_250398 (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 11648 12082 - pcrR 100.0 99.3 NP_250395 (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 10430 11314 - pcrV 100.0 99.0 NP_250397 (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_205 184 672 + phzB1 100.0 98.6 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_206 244 678 + phzB1 89.0 89.7 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_64 4045 5262 - phzC1 100.0 99.4 NP_252901 (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_64 3425 4048 - phzD1 100.0 99.2 NP_252902 (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_64 1545 3428 - phzE1 100.0 99.3 NP_252903 (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_64 695 1531 - phzF1 100.0 99.4 NP_252904 (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_64 25 669 - phzG1 100.0 99.7 NP_252906 (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_58 20231 22063 - phzH 100.0 99.1 NP_248741 (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_33 63347 64351 - phzM 100.0 99.1 NP_252898 (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_109 297 1505 + phzS 100.0 98.4 NP_252907 (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_149 31553 33252 + pilB 99.9 88.4 NP_253216 (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 56723 57148 - pilE 100.0 99.5 NP_253246 (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_92 95789 96547 - pilF 100.0 98.8 NP_252494 (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 32843 33250 - pilG 100.0 100.0 NP_249099 (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 32431 32796 - pilH 100.0 99.7 NP_249100 (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 31844 32380 - pilI 100.0 99.8 NP_249101 (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 29711 31759 - pilJ 100.0 99.7 NP_249102 (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 28775 29650 - pilK 100.0 99.3 NP_249103 (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_104 33497 34561 - pilM 100.0 99.5 NP_253731 (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_104 32901 33497 - pilN 100.0 99.2 NP_253730 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_104 32281 32904 - pilO 100.0 98.4 NP_253729 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_104 31760 32284 - pilP 100.0 99.4 NP_253728 (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_104 29562 31706 - pilQ 100.0 97.2 NP_253727 (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 65346 66683 - pilR 100.0 99.5 NP_253237 (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 66698 68290 - pilS 100.0 99.2 NP_253236 (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 45287 46321 - pilT 100.0 99.4 NP_249086 (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_66 43961 45109 - pilU 100.0 99.8 NP_249087 (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 62402 62959 - pilV 100.0 99.3 NP_253241 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 61581 62405 - pilW 100.0 98.9 NP_253242 (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 60997 61584 - pilX 100.0 99.3 NP_253243 (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 57494 60985 - pilY1 99.6 91.6 NP_253244 (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 57145 57492 - pilY2 100.0 99.1 NP_253245 (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 38256 40448 + plcH 100.0 99.6 NP_249535 (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1]
k141_168 8762 9934 - popB 100.0 99.5 NP_250399 (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 7863 8750 - popD 100.0 97.3 NP_250400 (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 15509 16375 - popN 100.0 99.4 NP_250389 (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_74 1009 1737 - pppA 100.0 99.6 NP_248765 (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_168 4106 4528 - pscB 100.0 99.3 NP_250406 (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 2304 4106 - pscC 100.0 99.3 NP_250407 (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 1004 2302 - pscD 100.0 99.1 NP_250408 (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 838 1041 - pscE 100.0 98.0 NP_250409 (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 578 835 - pscF 100.0 99.6 NP_250410 (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 228 575 - pscG 100.0 99.1 NP_250411 (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_210 18777 19185 - pscH 94.7 94.6 NP_250412 (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_210 18439 18777 - pscI 100.0 99.7 NP_250413 (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_210 17696 18442 - pscJ 100.0 99.5 NP_250414 (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_210 17067 17687 - pscK 99.0 97.8 NP_250415 (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_210 16444 17088 - pscL 100.0 98.8 NP_250416 (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 16566 17888 + pscN 100.0 99.5 NP_250388 (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 17885 18361 + pscO 100.0 99.4 NP_250387 (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 18349 19431 + pscP 96.8 94.8 NP_250386 (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 19428 20357 + pscQ 100.0 99.1 NP_250385 (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 20354 21007 + pscR 100.0 99.4 NP_250384 (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 21010 21276 + pscS 100.0 100.0 NP_250383 (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 21273 22061 + pscT 100.0 99.1 NP_250382 (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 22058 23107 + pscU 100.0 98.9 NP_250381 (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_107 5903 6841 + ptxR 100.0 98.7 NP_250948 (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_3 43130 44116 + pvcA 100.0 99.4 NP_250944 (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_3 44134 45009 + pvcB 100.0 99.0 NP_250945 (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_107 7585 9087 - pvcC 100.0 98.9 NP_250946 (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_107 6946 7592 - pvcD 99.8 97.8 NP_250947 (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_233 6065 7396 - pvdA 100.0 83.3 NP_251076 (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_233 19356 20183 - pvdF 100.0 82.2 NP_251086 (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_132 36321 37085 - pvdG 100.0 98.6 NP_251115 (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_132 9278 10687 - pvdH 100.0 99.2 NP_251103 (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_132 23219 36247 - pvdL 100.0 99.1 NP_251114 (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_233 15753 17099 + pvdM 99.8 95.6 NP_251083 (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_233 17122 18405 + pvdN 100.0 99.2 NP_251084 (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_233 18434 19288 + pvdO 100.0 98.1 NP_251085 (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_233 13893 15539 - pvdP 99.8 85.0 NP_251082 (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_233 3654 5942 - pvdQ 100.0 99.3 NP_251075 (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_132 37728 38291 + pvdS 100.0 97.7 NP_251116 (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_234 7314 8201 + rhlA 100.0 99.7 NP_252169 (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_234 8267 9547 + rhlB 100.0 99.8 NP_252168 (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_289 584 1561 - rhlC 100.0 98.9 NP_249821 (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1]
k141_236 23335 23940 - rhlI 100.0 98.7 NP_252166 (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_74 1747 2427 - tagF/pppB 100.0 98.8 NP_248766 (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_58 5767 6681 + tagQ 100.0 98.0 NP_248760 (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_58 3993 5705 + tagR 100.0 99.4 NP_248761 (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_58 2801 4000 + tagS 100.0 99.3 NP_248762 (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_58 2082 2801 + tagT 100.0 98.3 NP_248763 (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_239 4973 6889 + toxA 100.0 98.8 NP_249839 (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1]
k141_103 94 558 - tse1 100.0 99.8 NP_250535 (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_39 34486 34962 - tse2 100.0 98.7 NP_251392 (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_234 815 2041 - tse3 100.0 99.2 NP_252174 (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_74 21846 23777 + vgrG1a 100.0 99.2 NP_248781 (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_62 14051 15328 - waaA 100.0 99.2 NP_253675 (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_62 40016 41083 - waaC 100.0 99.2 NP_253698 (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_62 41080 42117 - waaF 100.0 99.5 NP_253699 (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_62 38898 40019 - waaG 100.0 99.2 NP_253697 (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_62 38095 38901 - waaP 100.0 99.3 NP_253696 (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_149 34480 35352 + xcpA/pilD 100.0 99.3 NP_253218 (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_120 11129 11836 - xcpP 100.0 99.7 NP_251794 (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 9148 11124 - xcpQ 100.0 99.0 NP_251795 (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 12056 13564 + xcpR 100.0 99.5 NP_251793 (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 13564 14781 + xcpS 100.0 99.3 NP_251792 (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 14786 15232 + xcpT 100.0 99.3 NP_251791 (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 15239 15757 + xcpU 100.0 98.5 NP_251790 (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 15754 16143 + xcpV 100.0 99.2 NP_251789 (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 16140 16844 + xcpW 98.7 98.3 NP_251788 (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 16841 17842 + xcpX 100.0 99.1 NP_251787 (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 17839 18987 + xcpY 100.0 98.3 NP_251786 (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_120 18989 19513 + xcpZ 100.0 99.2 NP_251785 (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
129_pio
Contig Start End Strand Gene Coverage Identity Accession Product
k141_139 148046 149215 - alg44 100.0 99.7 NP_252232 (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_139 149298 150782 - alg8 100.0 99.7 NP_252231 (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_139 135581 137026 - algA 100.0 99.5 NP_252241 (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_97 49920 51269 + algB 100.0 99.8 NP_254170 (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_208 24088 25479 - algC 100.0 99.9 NP_254009 (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1]
k141_139 150922 152232 - algD 100.0 99.8 NP_252230 (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_139 145136 146608 - algE 100.0 99.7 NP_252234 (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_139 137223 137873 - algF 100.0 99.7 NP_252240 (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_139 143484 145115 - algG 100.0 99.7 NP_252235 (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_139 139136 140698 - algI 100.0 99.6 NP_252238 (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_139 137946 139121 - algJ 100.0 99.5 NP_252239 (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_139 146605 148032 - algK 100.0 99.7 NP_252233 (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_139 140940 142043 - algL 100.0 99.7 NP_252237 (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_203 12266 13312 + algP/algR3 98.9 96.7 NP_253940 (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_203 10967 11449 + algQ 100.0 98.8 NP_253942 (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_203 5077 5823 + algR 100.0 99.3 NP_253948 (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_240 37926 38507 - algU 100.0 99.1 NP_249453 (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_67 20263 21432 - algW 100.0 99.1 NP_253136 (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_139 142047 143471 - algX 100.0 99.5 NP_252236 (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_203 3996 5072 + algZ 100.0 99.6 NP_253949 (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_102 6197 7636 + aprA 100.0 99.3 NP_249940 (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1]
k141_193 25368 32798 + chpA 99.9 98.7 NP_249104 (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 32791 33822 + chpB 100.0 99.0 NP_249105 (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 33819 34325 + chpC 100.0 98.8 NP_249106 (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 34333 35127 + chpD 100.0 99.2 NP_249107 (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 35203 35814 + chpE 100.0 98.9 NP_249108 (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_199 41829 44537 + clpV1 100.0 99.2 NP_248780 (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 28692 30041 - dotU1 100.0 99.7 NP_248768 (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_0 5661 7034 - exoT 100.0 99.2 NP_248734 (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1]
k141_23 1069 3132 + exoU 100.0 100.0 AAC16023 (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103]
k141_263 30033 31168 + exoY 99.9 99.0 NP_250881 (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]
k141_162 54495 55331 + exsA 100.0 99.6 NP_250404 (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 53784 54197 + exsB 100.0 98.3 NP_250403 (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 53084 53521 + exsC 100.0 98.4 NP_250401 (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 55429 56259 + exsD 100.0 98.8 NP_250405 (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 53530 53775 + exsE 100.0 97.2 NP_250402 (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_199 31907 33364 - fha1 97.6 96.7 NP_248771 (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_54 63562 64071 - fimT 100.0 97.1 NP_253239 (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 62950 63456 - fimU 100.0 99.2 NP_253240 (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_88 176 2950 - fimV 100.0 98.3 NP_251805 (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_96 23206 24048 - fleN 100.0 98.9 NP_250145 (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 135789 137261 + fleQ 100.0 99.2 NP_249788 (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 138587 140002 + fleR 99.6 98.9 NP_249790 (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 137374 138582 + fleS 100.0 99.1 NP_249789 (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_191 28602 29300 + flgA 100.0 98.3 NP_252040 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_23 108975 109382 + flgB 100.0 100.0 NP_249768 (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_23 109388 109828 + flgC 100.0 99.8 NP_249769 (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 109841 110554 + flgD 100.0 99.6 NP_249770 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 110582 111970 + flgE 100.0 99.4 NP_249771 (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 112187 112936 + flgF 100.0 99.3 NP_249772 (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 112983 113768 + flgG 100.0 99.5 NP_249773 (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 113814 114509 + flgH 100.0 98.8 NP_249774 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 114521 115630 + flgI 100.0 99.4 NP_249775 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 115641 116843 + flgJ 100.0 99.1 NP_249776 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 116862 118910 + flgK 99.7 86.7 NP_249777 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_191 29445 29768 + flgM 100.0 98.2 NP_252041 (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_191 29823 30293 + flgN 100.0 98.7 NP_252042 (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_96 25560 27683 - flhA 100.0 99.3 NP_250143 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_96 30528 31664 - flhB 100.0 99.7 NP_250140 (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_96 24187 25476 - flhF 100.0 99.5 NP_250144 (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_96 22466 23209 - fliA 100.0 99.7 NP_250146 (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_23 140249 140578 + fliE 100.0 99.7 NP_249791 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 140601 142397 + fliF 100.0 99.5 NP_249792 (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 142403 143419 + fliG 100.0 99.6 NP_249793 (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 143421 144227 + fliH 100.0 99.1 NP_249794 (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 144217 145572 + fliI 100.0 99.1 NP_249795 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_23 145586 146029 + fliJ 100.0 99.1 NP_249796 (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_96 36220 37503 - fliK 100.0 98.2 NP_250132 (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_96 35455 35976 - fliL 100.0 100.0 NP_250133 (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_96 34476 35447 - fliM 100.0 99.9 NP_250134 (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_96 33975 34448 - fliN 100.0 98.5 NP_250135 (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_96 33521 33973 - fliO 100.0 98.9 NP_250136 (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_96 32757 33524 - fliP 100.0 99.3 NP_250137 (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_96 32443 32712 - fliQ 100.0 99.6 NP_250138 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_96 31667 32443 - fliR 100.0 99.2 NP_250139 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_50 4635 6797 - fptA 100.0 99.3 NP_252911 (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_199 36958 37446 + hcp1 100.0 100.0 NP_248775 (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 33732 34766 + hsiA1 100.0 99.8 NP_248772 (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 34855 35373 + hsiB1/vipA 100.0 99.8 NP_248773 (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 35386 36882 + hsiC1/vipB 100.0 99.5 NP_248774 (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 37614 38459 + hsiE1 100.0 98.7 NP_248776 (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 38461 38970 + hsiF1 100.0 98.8 NP_248777 (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 38967 40826 + hsiG1 100.0 99.2 NP_248778 (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 40790 41836 + hsiH1 100.0 98.8 NP_248779 (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 30048 31382 - hsiJ1 100.0 99.6 NP_248769 (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 25162 28470 - icmF1/tssM1 100.0 99.1 NP_248767 (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_99 88545 89801 + lasA 100.0 98.0 NP_250562 (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1]
k141_164 125567 127063 + lasB 100.0 98.5 NP_252413 (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1]
k141_96 48140 48745 - lasI 100.0 99.8 NP_250123 (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_199 31398 31862 - lip1 100.0 100.0 NP_248770 (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_118 8982 9200 - mbtH-like 100.0 100.0 NP_251102 (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_112 21265 22116 - motA 100.0 98.2 NP_253641 (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_112 20202 21245 - motB 100.0 99.3 NP_253640 (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_96 16731 17471 - motC 100.0 99.2 NP_250151 (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_96 15828 16718 - motD 100.0 98.7 NP_250152 (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_235 27727 28692 - motY 100.0 99.3 NP_252216 (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_240 37310 37894 - mucA 100.0 99.1 NP_249454 (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_240 36351 37301 - mucB 100.0 99.0 NP_249455 (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_240 35899 36354 - mucC 100.0 99.6 NP_249456 (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_240 34435 35859 - mucD 100.0 98.9 NP_249457 (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_146 10326 10595 + mucE 100.0 98.5 NP_252722 (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_139 26039 27391 + mucP 100.0 99.3 NP_252339 (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_196 15713 17143 + pchA 100.0 99.0 NP_252921 (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_196 15411 15716 + pchB 100.0 99.7 NP_252920 (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_196 14656 15411 + pchC 100.0 99.3 NP_252919 (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_196 13016 14659 + pchD 100.0 99.2 NP_252918 (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_196 7386 11702 - pchE 100.0 98.9 NP_252916 (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_196 1960 7389 - pchF 100.0 98.8 NP_252915 (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_196 914 1963 - pchG 100.0 98.9 NP_252914 (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_50 6889 8613 - pchI 100.0 99.0 NP_252912 (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_196 11896 12786 - pchR 100.0 99.0 NP_252917 (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_162 45293 45571 + pcr1 100.0 99.6 NP_250390 (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 45558 45929 + pcr2 100.0 98.9 NP_250391 (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 45926 46291 + pcr3 100.0 98.4 NP_250392 (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 46296 46625 + pcr4 100.0 99.1 NP_250393 (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 46622 48742 + pcrD 100.0 99.0 NP_250394 (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 49201 49497 + pcrG 100.0 99.7 NP_250396 (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 50400 50906 + pcrH 100.0 99.2 NP_250398 (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 48739 49173 + pcrR 100.0 99.3 NP_250395 (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 49507 50391 + pcrV 100.0 99.0 NP_250397 (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_168 184 672 + phzB1 100.0 98.6 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_169 244 678 + phzB1 89.0 89.7 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_61 4045 5262 - phzC1 100.0 99.3 NP_252901 (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_61 3425 4048 - phzD1 100.0 99.2 NP_252902 (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_61 1545 3428 - phzE1 100.0 99.2 NP_252903 (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_61 695 1531 - phzF1 100.0 99.5 NP_252904 (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_61 25 669 - phzG1 100.0 99.8 NP_252906 (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_199 663 2495 + phzH 100.0 99.1 NP_248741 (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_100 63161 64165 - phzM 100.0 99.1 NP_252898 (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_50 297 1505 + phzS 100.0 98.4 NP_252907 (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_223 69221 70920 + pilB 99.9 88.4 NP_253216 (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 56723 57148 - pilE 100.0 99.5 NP_253246 (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_164 30773 31531 + pilF 100.0 98.8 NP_252494 (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 20881 21288 + pilG 100.0 100.0 NP_249099 (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 21335 21700 + pilH 100.0 99.7 NP_249100 (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 21751 22287 + pilI 100.0 99.8 NP_249101 (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 22372 24420 + pilJ 100.0 99.7 NP_249102 (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 24481 25356 + pilK 100.0 99.3 NP_249103 (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_198 36678 37742 - pilM 100.0 99.5 NP_253731 (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_198 36082 36678 - pilN 100.0 99.2 NP_253730 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_198 35462 36085 - pilO 100.0 98.4 NP_253729 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_198 34941 35465 - pilP 100.0 99.4 NP_253728 (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_198 32743 34887 - pilQ 100.0 97.2 NP_253727 (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 65346 66683 - pilR 100.0 99.5 NP_253237 (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 66698 68290 - pilS 100.0 99.2 NP_253236 (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 7810 8844 + pilT 100.0 99.4 NP_249086 (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 9022 10170 + pilU 100.0 99.8 NP_249087 (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 62402 62959 - pilV 100.0 99.3 NP_253241 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 61581 62405 - pilW 100.0 98.9 NP_253242 (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 60997 61584 - pilX 100.0 99.3 NP_253243 (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 57494 60985 - pilY1 99.6 91.6 NP_253244 (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 57145 57492 - pilY2 100.0 99.1 NP_253245 (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_136 38204 40396 + plcH 100.0 99.6 NP_249535 (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1]
k141_162 50887 52059 + popB 100.0 99.5 NP_250399 (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 52071 52958 + popD 100.0 97.3 NP_250400 (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 44446 45312 + popN 100.0 99.4 NP_250389 (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_199 20641 23739 - ppkA 100.0 99.5 NP_248764 (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 23747 24475 - pppA 100.0 99.6 NP_248765 (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_162 56293 56715 + pscB 100.0 99.3 NP_250406 (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 56715 58517 + pscC 100.0 99.3 NP_250407 (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 58519 59817 + pscD 100.0 99.1 NP_250408 (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 59780 59983 + pscE 100.0 98.0 NP_250409 (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 59986 60243 + pscF 100.0 99.6 NP_250410 (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 60246 60593 + pscG 100.0 99.1 NP_250411 (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 60590 61021 + pscH 100.0 99.3 NP_250412 (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 61021 61359 + pscI 100.0 99.7 NP_250413 (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 61356 62102 + pscJ 100.0 99.5 NP_250414 (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 62111 62731 + pscK 99.0 97.8 NP_250415 (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 62710 63354 + pscL 100.0 98.8 NP_250416 (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 42933 44255 - pscN 100.0 99.5 NP_250388 (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 42460 42936 - pscO 100.0 99.4 NP_250387 (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 41390 42472 - pscP 96.8 94.8 NP_250386 (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 40464 41393 - pscQ 100.0 99.1 NP_250385 (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 39814 40467 - pscR 100.0 99.4 NP_250384 (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 39545 39811 - pscS 100.0 100.0 NP_250383 (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 38760 39548 - pscT 100.0 99.1 NP_250382 (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_162 37714 38763 - pscU 100.0 98.9 NP_250381 (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_202 5515 6453 - ptxR 100.0 98.7 NP_250948 (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_202 1283 2269 + pvcA 100.0 99.4 NP_250944 (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_202 2287 3162 + pvcB 100.0 99.0 NP_250945 (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_202 3269 4771 + pvcC 100.0 98.9 NP_250946 (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_202 4764 5410 + pvcD 99.8 97.8 NP_250947 (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_264 11616 12947 - pvdA 100.0 83.3 NP_251076 (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_264 24907 25734 - pvdF 100.0 82.2 NP_251086 (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_257 99896 100660 - pvdG 100.0 98.6 NP_251115 (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_118 9278 10687 - pvdH 100.0 99.2 NP_251103 (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_257 86794 99822 - pvdL 100.0 99.1 NP_251114 (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_264 21304 22650 + pvdM 99.8 95.6 NP_251083 (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_264 22673 23956 + pvdN 100.0 99.2 NP_251084 (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_264 23985 24839 + pvdO 100.0 98.1 NP_251085 (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_264 19444 21090 - pvdP 99.8 85.0 NP_251082 (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_264 9205 11493 - pvdQ 100.0 99.3 NP_251075 (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_257 101303 101866 + pvdS 100.0 97.7 NP_251116 (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_226 2384 3271 - rhlA 100.0 99.7 NP_252169 (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_226 1038 2318 - rhlB 100.0 99.8 NP_252168 (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_227 584 1561 - rhlC 100.0 98.9 NP_249821 (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1]
k141_199 24485 25165 - tagF/pppB 100.0 98.8 NP_248766 (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 16045 16959 - tagQ 100.0 98.0 NP_248760 (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_199 17021 18733 - tagR 100.0 99.4 NP_248761 (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 18726 19925 - tagS 100.0 99.3 NP_248762 (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 19925 20644 - tagT 100.0 98.3 NP_248763 (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_121 4973 6889 + toxA 100.0 98.8 NP_249839 (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1]
k141_99 58204 58668 - tse1 100.0 99.8 NP_250535 (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_40 34540 35016 - tse2 100.0 98.7 NP_251392 (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_226 8544 9770 + tse3 100.0 99.2 NP_252174 (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_199 44584 46515 + vgrG1a 100.0 99.2 NP_248781 (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_199 49236 51461 + vgrG1b 100.0 98.7 NP_248785 (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_112 66074 67351 - waaA 100.0 99.2 NP_253675 (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_112 92039 93106 - waaC 100.0 99.2 NP_253698 (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_112 93103 94140 - waaF 100.0 99.5 NP_253699 (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_112 90921 92042 - waaG 100.0 99.2 NP_253697 (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_112 90118 90924 - waaP 100.0 99.3 NP_253696 (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_223 72148 73020 + xcpA/pilD 100.0 99.3 NP_253218 (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_195 7929 8636 + xcpP 100.0 99.7 NP_251794 (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 8641 10617 + xcpQ 100.0 99.0 NP_251795 (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 6201 7709 - xcpR 100.0 99.5 NP_251793 (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 4984 6201 - xcpS 100.0 99.3 NP_251792 (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 4533 4979 - xcpT 100.0 99.3 NP_251791 (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 4008 4526 - xcpU 100.0 98.5 NP_251790 (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 3622 4011 - xcpV 100.0 99.2 NP_251789 (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 2921 3625 - xcpW 98.7 98.3 NP_251788 (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 1923 2924 - xcpX 100.0 99.1 NP_251787 (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 778 1926 - xcpY 100.0 98.3 NP_251786 (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_195 252 776 - xcpZ 100.0 99.2 NP_251785 (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
159_pio
Contig Start End Strand Gene Coverage Identity Accession Product
k141_121 49171 50340 + alg44 100.0 99.7 NP_252232 (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_121 47604 49088 + alg8 100.0 99.7 NP_252231 (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_121 61360 62805 + algA 100.0 99.5 NP_252241 (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_268 1464 2813 + algB 100.0 99.8 NP_254170 (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_257 1054 2445 - algC 100.0 99.9 NP_254009 (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1]
k141_121 46154 47464 + algD 100.0 99.8 NP_252230 (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_121 51778 53250 + algE 100.0 99.7 NP_252234 (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_121 60513 61163 + algF 100.0 99.7 NP_252240 (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_121 53271 54902 + algG 100.0 99.7 NP_252235 (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_121 57688 59250 + algI 100.0 99.6 NP_252238 (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_121 59265 60440 + algJ 100.0 99.5 NP_252239 (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_121 50354 51781 + algK 100.0 99.7 NP_252233 (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_121 56343 57446 + algL 100.0 99.7 NP_252237 (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_305 12266 13312 + algP/algR3 98.9 96.7 NP_253940 (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_305 10967 11449 + algQ 100.0 98.8 NP_253942 (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_305 5077 5823 + algR 100.0 99.3 NP_253948 (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_165 23235 23816 - algU 100.0 99.1 NP_249453 (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_7 17663 18832 + algW 100.0 99.1 NP_253136 (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_121 54915 56339 + algX 100.0 99.5 NP_252236 (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_305 3996 5072 + algZ 100.0 99.6 NP_253949 (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_122 5233 6672 - aprA 100.0 99.3 NP_249940 (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1]
k141_225 41279 48709 - chpA 99.9 98.7 NP_249104 (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 40255 41286 - chpB 100.0 99.0 NP_249105 (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 39752 40258 - chpC 100.0 98.8 NP_249106 (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 38950 39744 - chpD 100.0 99.2 NP_249107 (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 38263 38874 - chpE 100.0 98.9 NP_249108 (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_258 143901 146609 - clpV1 100.0 99.2 NP_248780 (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 158397 159746 + dotU1 100.0 99.7 NP_248768 (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_206 5638 7011 - exoT 100.0 99.2 NP_248734 (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1]
k141_39 1069 3132 + exoU 100.0 100.0 AAC16023 (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103]
k141_89 30033 31168 + exoY 99.9 99.0 NP_250881 (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]
k141_191 10664 11500 + exsA 100.0 99.6 NP_250404 (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 9953 10366 + exsB 100.0 98.3 NP_250403 (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 9253 9690 + exsC 100.0 98.4 NP_250401 (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 11598 12428 + exsD 100.0 98.8 NP_250405 (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 9699 9944 + exsE 100.0 97.2 NP_250402 (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_258 155074 156531 + fha1 97.6 96.7 NP_248771 (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_218 15730 16239 + fimT 100.0 97.1 NP_253239 (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_218 16345 16851 + fimU 100.0 99.2 NP_253240 (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_77 13810 16584 + fimV 100.0 98.3 NP_251805 (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_255 28595 29437 - fleN 100.0 98.9 NP_250145 (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 32734 34206 - fleQ 100.0 99.2 NP_249788 (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 29993 31408 - fleR 99.6 98.9 NP_249790 (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 31413 32621 - fleS 100.0 99.1 NP_249789 (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_233 17735 18433 - flgA 100.0 98.3 NP_252040 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_74 60613 61020 - flgB 100.0 100.0 NP_249768 (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_74 60167 60607 - flgC 100.0 99.8 NP_249769 (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 59441 60154 - flgD 100.0 99.6 NP_249770 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 58025 59413 - flgE 100.0 99.4 NP_249771 (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 57059 57808 - flgF 100.0 99.3 NP_249772 (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 56227 57012 - flgG 100.0 99.5 NP_249773 (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 55486 56181 - flgH 100.0 98.8 NP_249774 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 54365 55474 - flgI 100.0 99.4 NP_249775 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 53152 54354 - flgJ 100.0 99.1 NP_249776 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 51085 53133 - flgK 99.7 86.7 NP_249777 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_233 17267 17590 - flgM 100.0 98.2 NP_252041 (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_233 16742 17212 - flgN 100.0 98.7 NP_252042 (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_255 30949 33072 - flhA 100.0 99.3 NP_250143 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_255 35917 37053 - flhB 100.0 99.7 NP_250140 (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_255 29576 30865 - flhF 100.0 99.5 NP_250144 (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_255 27855 28598 - fliA 100.0 99.7 NP_250146 (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_74 29417 29746 - fliE 100.0 99.7 NP_249791 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 27598 29394 - fliF 100.0 99.5 NP_249792 (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 26576 27592 - fliG 100.0 99.6 NP_249793 (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 25768 26574 - fliH 100.0 99.1 NP_249794 (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 24423 25778 - fliI 100.0 99.1 NP_249795 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_74 23966 24409 - fliJ 100.0 99.1 NP_249796 (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_255 41609 42892 - fliK 100.0 98.2 NP_250132 (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_255 40844 41365 - fliL 100.0 100.0 NP_250133 (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_255 39865 40836 - fliM 100.0 99.9 NP_250134 (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_255 39364 39837 - fliN 100.0 98.5 NP_250135 (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_255 38910 39362 - fliO 100.0 98.9 NP_250136 (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_255 38146 38913 - fliP 100.0 99.3 NP_250137 (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_255 37832 38101 - fliQ 100.0 99.6 NP_250138 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_255 37056 37832 - fliR 100.0 99.2 NP_250139 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_100 4635 6797 - fptA 100.0 99.3 NP_252911 (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_258 150992 151480 - hcp1 100.0 100.0 NP_248775 (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 153672 154706 - hsiA1 100.0 99.8 NP_248772 (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 153065 153583 - hsiB1/vipA 100.0 99.8 NP_248773 (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 151556 153052 - hsiC1/vipB 100.0 99.5 NP_248774 (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 149979 150824 - hsiE1 100.0 98.7 NP_248776 (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 149468 149977 - hsiF1 100.0 98.8 NP_248777 (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 147612 149471 - hsiG1 100.0 99.2 NP_248778 (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 146602 147648 - hsiH1 100.0 98.8 NP_248779 (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 157056 158390 + hsiJ1 100.0 99.6 NP_248769 (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 159968 163276 + icmF1/tssM1 100.0 99.1 NP_248767 (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_261 18524 19780 + lasA 100.0 98.0 NP_250562 (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1]
k141_88 60 1556 - lasB 100.0 98.5 NP_252413 (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1]
k141_255 53529 54134 - lasI 100.0 99.8 NP_250123 (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_258 156576 157040 + lip1 100.0 100.0 NP_248770 (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_137 8982 9200 - mbtH-like 100.0 100.0 NP_251102 (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_281 79130 79981 + motA 100.0 98.2 NP_253641 (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_281 80001 81044 + motB 100.0 99.3 NP_253640 (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_255 22120 22860 - motC 100.0 99.2 NP_250151 (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_255 21217 22107 - motD 100.0 98.7 NP_250152 (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_121 29323 30288 - motY 100.0 99.3 NP_252216 (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_165 22619 23203 - mucA 100.0 99.1 NP_249454 (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_165 21660 22610 - mucB 100.0 99.0 NP_249455 (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_165 21208 21663 - mucC 100.0 99.6 NP_249456 (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_165 19744 21168 - mucD 100.0 98.9 NP_249457 (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_61 10441 10710 + mucE 100.0 98.5 NP_252722 (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_121 171224 172576 - mucP 100.0 99.3 NP_252339 (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_272 6322 7752 - pchA 100.0 99.0 NP_252921 (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_272 7749 8054 - pchB 100.0 99.7 NP_252920 (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_272 8054 8809 - pchC 100.0 99.3 NP_252919 (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_272 8806 10449 - pchD 100.0 99.2 NP_252918 (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_272 11763 15714 + pchE 91.5 98.5 NP_252916 (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_97 2047 7476 - pchF 100.0 98.8 NP_252915 (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_97 1001 2050 - pchG 100.0 98.9 NP_252914 (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_100 6889 8613 - pchI 100.0 99.0 NP_252912 (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_272 10679 11569 + pchR 100.0 99.0 NP_252917 (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_191 1462 1740 + pcr1 100.0 99.6 NP_250390 (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 1727 2098 + pcr2 100.0 98.9 NP_250391 (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 2095 2460 + pcr3 100.0 98.4 NP_250392 (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 2465 2794 + pcr4 100.0 99.1 NP_250393 (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 2791 4911 + pcrD 100.0 99.0 NP_250394 (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 5370 5666 + pcrG 100.0 99.7 NP_250396 (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 6569 7075 + pcrH 100.0 99.2 NP_250398 (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 4908 5342 + pcrR 100.0 99.3 NP_250395 (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 5676 6560 + pcrV 100.0 99.0 NP_250397 (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_184 184 672 + phzB1 100.0 98.6 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_185 244 678 + phzB1 89.0 89.7 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_87 4045 5262 - phzC1 100.0 99.3 NP_252901 (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_87 3425 4048 - phzD1 100.0 99.2 NP_252902 (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_87 1545 3428 - phzE1 100.0 99.2 NP_252903 (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_87 695 1531 - phzF1 100.0 99.4 NP_252904 (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_87 25 669 - phzG1 100.0 99.8 NP_252906 (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_219 20353 22185 - phzH 100.0 99.1 NP_248741 (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_105 11197 12201 - phzM 100.0 99.1 NP_252898 (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_100 297 1505 + phzS 100.0 98.4 NP_252907 (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_23 31514 33213 + pilB 99.9 88.4 NP_253216 (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_218 22653 23078 + pilE 100.0 99.5 NP_253246 (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_88 95592 96350 - pilF 100.0 98.8 NP_252494 (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 52789 53196 - pilG 100.0 100.0 NP_249099 (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 52377 52742 - pilH 100.0 99.7 NP_249100 (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 51790 52326 - pilI 100.0 99.8 NP_249101 (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 49657 51705 - pilJ 100.0 99.7 NP_249102 (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 48721 49596 - pilK 100.0 99.3 NP_249103 (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_80 6929 7993 - pilM 100.0 99.5 NP_253731 (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_80 6333 6929 - pilN 100.0 99.2 NP_253730 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_80 5713 6336 - pilO 100.0 98.4 NP_253729 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_80 5192 5716 - pilP 100.0 99.4 NP_253728 (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_80 2994 5138 - pilQ 100.0 97.2 NP_253727 (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_218 13118 14455 + pilR 100.0 99.5 NP_253237 (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_218 11511 13103 + pilS 100.0 99.2 NP_253236 (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 65233 66267 - pilT 100.0 99.4 NP_249086 (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_225 63907 65055 - pilU 100.0 99.8 NP_249087 (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_218 16842 17399 + pilV 100.0 99.3 NP_253241 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_218 17396 18220 + pilW 100.0 98.9 NP_253242 (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_218 18217 18804 + pilX 100.0 99.3 NP_253243 (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_218 18816 22307 + pilY1 99.6 91.6 NP_253244 (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_218 22309 22656 + pilY2 100.0 99.1 NP_253245 (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_85 4105 6297 - plcH 100.0 99.6 NP_249535 (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1]
k141_191 7056 8228 + popB 100.0 99.5 NP_250399 (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 8240 9127 + popD 100.0 97.3 NP_250400 (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 615 1481 + popN 100.0 99.4 NP_250389 (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_0 966 1694 - pppA 100.0 99.6 NP_248765 (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_191 12462 12884 + pscB 100.0 99.3 NP_250406 (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 12884 14686 + pscC 100.0 99.3 NP_250407 (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 14688 15986 + pscD 100.0 99.1 NP_250408 (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 15949 16152 + pscE 100.0 98.0 NP_250409 (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 16155 16412 + pscF 100.0 99.6 NP_250410 (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 16415 16762 + pscG 100.0 99.1 NP_250411 (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 16759 17190 + pscH 100.0 99.3 NP_250412 (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 17190 17528 + pscI 100.0 99.7 NP_250413 (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 17525 18271 + pscJ 100.0 99.5 NP_250414 (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 18280 18900 + pscK 99.0 97.8 NP_250415 (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_191 18879 19523 + pscL 100.0 98.8 NP_250416 (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_289 1108 1584 + pscO 100.0 99.4 NP_250387 (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_289 1572 2654 + pscP 96.8 94.8 NP_250386 (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_289 2651 3580 + pscQ 100.0 99.1 NP_250385 (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_289 3577 4230 + pscR 100.0 99.4 NP_250384 (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_289 4233 4499 + pscS 100.0 100.0 NP_250383 (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_289 4496 5284 + pscT 100.0 99.1 NP_250382 (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_289 5281 6330 + pscU 100.0 98.9 NP_250381 (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_27 2342 3280 - ptxR 100.0 98.7 NP_250948 (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_94 904 1890 - pvcA 100.0 99.4 NP_250944 (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_94 11 886 - pvcB 100.0 98.4 NP_250945 (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_27 96 1598 + pvcC 100.0 98.9 NP_250946 (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_27 1591 2237 + pvcD 99.8 97.8 NP_250947 (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_198 21092 22423 + pvdA 100.0 83.3 NP_251076 (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_198 8305 9132 + pvdF 100.0 82.2 NP_251086 (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_247 22028 22792 - pvdG 100.0 98.6 NP_251115 (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_137 9278 10687 - pvdH 100.0 99.2 NP_251103 (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_247 8926 21954 - pvdL 100.0 99.1 NP_251114 (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_198 11389 12735 - pvdM 99.8 95.6 NP_251083 (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_198 10083 11366 - pvdN 100.0 99.2 NP_251084 (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_198 9200 10054 - pvdO 100.0 98.1 NP_251085 (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_198 12949 14595 + pvdP 99.8 85.0 NP_251082 (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_198 22546 24834 + pvdQ 100.0 99.3 NP_251075 (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_247 23435 23998 + pvdS 100.0 97.7 NP_251116 (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_286 2460 3347 - rhlA 100.0 99.7 NP_252169 (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_286 1114 2394 - rhlB 100.0 99.8 NP_252168 (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_119 17547 18524 + rhlC 100.0 98.9 NP_249821 (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1]
k141_260 231 836 + rhlI 100.0 98.7 NP_252166 (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_0 1704 2384 - tagF/pppB 100.0 98.8 NP_248766 (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_219 5889 6803 + tagQ 100.0 98.0 NP_248760 (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_219 4115 5827 + tagR 100.0 99.4 NP_248761 (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_219 2923 4122 + tagS 100.0 99.3 NP_248762 (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_219 2204 2923 + tagT 100.0 98.3 NP_248763 (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_186 4973 6889 + toxA 100.0 98.8 NP_249839 (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1]
k141_147 11495 11959 + tse1 100.0 99.8 NP_250535 (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_34 16101 16577 - tse2 100.0 98.7 NP_251392 (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_286 8620 9846 + tse3 100.0 99.2 NP_252174 (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_258 141923 143854 - vgrG1a 100.0 99.2 NP_248781 (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_258 136977 139202 - vgrG1b 100.0 98.7 NP_248785 (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_281 33895 35172 + waaA 100.0 99.2 NP_253675 (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_281 8140 9207 + waaC 100.0 99.2 NP_253698 (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_281 7106 8143 + waaF 100.0 99.5 NP_253699 (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_281 9204 10325 + waaG 100.0 99.2 NP_253697 (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_281 10322 11128 + waaP 100.0 99.3 NP_253696 (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_23 34441 35313 + xcpA/pilD 100.0 99.3 NP_253218 (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_14 87928 88635 + xcpP 100.0 99.7 NP_251794 (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 88640 90616 + xcpQ 100.0 99.0 NP_251795 (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 86200 87708 - xcpR 100.0 99.5 NP_251793 (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 84983 86200 - xcpS 100.0 99.3 NP_251792 (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 84532 84978 - xcpT 100.0 99.3 NP_251791 (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 84007 84525 - xcpU 100.0 98.5 NP_251790 (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 83621 84010 - xcpV 100.0 99.2 NP_251789 (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 82920 83624 - xcpW 98.7 98.3 NP_251788 (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 81922 82923 - xcpX 100.0 99.1 NP_251787 (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 80777 81925 - xcpY 100.0 98.3 NP_251786 (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_14 80251 80775 - xcpZ 100.0 99.2 NP_251785 (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
165_pio
Contig Start End Strand Gene Coverage Identity Accession Product
k141_286 47544 48713 + alg44 100.0 99.7 NP_252232 (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_286 45977 47461 + alg8 100.0 99.7 NP_252231 (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_286 59733 61178 + algA 100.0 99.5 NP_252241 (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_171 64945 66294 - algB 100.0 99.8 NP_254170 (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_207 104624 106015 + algC 100.0 99.9 NP_254009 (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1]
k141_286 44527 45837 + algD 100.0 99.8 NP_252230 (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_286 50151 51623 + algE 100.0 99.7 NP_252234 (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_286 58886 59536 + algF 100.0 99.7 NP_252240 (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_286 51644 53275 + algG 100.0 99.7 NP_252235 (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_286 56061 57623 + algI 100.0 99.6 NP_252238 (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_286 57638 58813 + algJ 100.0 99.5 NP_252239 (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_286 48727 50154 + algK 100.0 99.7 NP_252233 (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_286 54716 55819 + algL 100.0 99.7 NP_252237 (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_282 12266 13312 + algP/algR3 98.9 96.7 NP_253940 (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_282 10967 11449 + algQ 100.0 98.8 NP_253942 (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_282 5077 5823 + algR 100.0 99.3 NP_253948 (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_172 39005 39586 - algU 100.0 99.1 NP_249453 (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_46 17660 18829 + algW 100.0 99.1 NP_253136 (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_286 53288 54712 + algX 100.0 99.5 NP_252236 (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_282 3996 5072 + algZ 100.0 99.6 NP_253949 (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_260 65520 66959 - aprA 100.0 99.3 NP_249940 (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1]
k141_98 31285 38715 - chpA 99.9 98.7 NP_249104 (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 30261 31292 - chpB 100.0 99.0 NP_249105 (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 29758 30264 - chpC 100.0 98.8 NP_249106 (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 28956 29750 - chpD 100.0 99.2 NP_249107 (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 28269 28880 - chpE 100.0 98.9 NP_249108 (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_85 41835 44543 + clpV1 100.0 99.2 NP_248780 (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 28698 30047 - dotU1 100.0 99.7 NP_248768 (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_271 5558 6931 - exoT 100.0 99.2 NP_248734 (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1]
k141_18 95242 97305 - exoU 100.0 100.0 AAC16023 (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103]
k141_89 29955 31090 + exoY 99.9 99.0 NP_250881 (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]
k141_127 26720 27556 + exsA 100.0 99.6 NP_250404 (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 26009 26422 + exsB 100.0 98.3 NP_250403 (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 25309 25746 + exsC 100.0 98.4 NP_250401 (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 27654 28484 + exsD 100.0 98.8 NP_250405 (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 25755 26000 + exsE 100.0 97.2 NP_250402 (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_85 31913 33370 - fha1 97.6 96.7 NP_248771 (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_148 25095 25604 - fimT 100.0 97.1 NP_253239 (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_148 24483 24989 - fimU 100.0 99.2 NP_253240 (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_209 5882 8656 + fimV 100.0 98.3 NP_251805 (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_243 48574 49416 - fleN 100.0 98.9 NP_250145 (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 32734 34206 - fleQ 100.0 99.2 NP_249788 (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 29993 31408 - fleR 99.6 98.9 NP_249790 (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 31413 32621 - fleS 100.0 99.1 NP_249789 (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_184 44654 45352 + flgA 100.0 98.3 NP_252040 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_295 60613 61020 - flgB 100.0 100.0 NP_249768 (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_295 60167 60607 - flgC 100.0 99.8 NP_249769 (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 59441 60154 - flgD 100.0 99.6 NP_249770 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 58025 59413 - flgE 100.0 99.4 NP_249771 (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 57059 57808 - flgF 100.0 99.3 NP_249772 (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 56227 57012 - flgG 100.0 99.5 NP_249773 (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 55486 56181 - flgH 100.0 98.8 NP_249774 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 54365 55474 - flgI 100.0 99.4 NP_249775 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 53152 54354 - flgJ 100.0 99.1 NP_249776 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 51085 53133 - flgK 99.7 86.7 NP_249777 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_184 45497 45820 + flgM 100.0 98.2 NP_252041 (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_184 45875 46345 + flgN 100.0 98.7 NP_252042 (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_243 50928 53051 - flhA 100.0 99.3 NP_250143 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_243 55896 57032 - flhB 100.0 99.7 NP_250140 (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_243 49555 50844 - flhF 100.0 99.5 NP_250144 (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_243 47834 48577 - fliA 100.0 99.7 NP_250146 (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_295 29417 29746 - fliE 100.0 99.7 NP_249791 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 27598 29394 - fliF 100.0 99.5 NP_249792 (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 26576 27592 - fliG 100.0 99.6 NP_249793 (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 25768 26574 - fliH 100.0 99.1 NP_249794 (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 24423 25778 - fliI 100.0 99.1 NP_249795 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_295 23966 24409 - fliJ 100.0 99.1 NP_249796 (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_243 61588 62871 - fliK 100.0 98.2 NP_250132 (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_243 60823 61344 - fliL 100.0 100.0 NP_250133 (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_243 59844 60815 - fliM 100.0 99.9 NP_250134 (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_243 59343 59816 - fliN 100.0 98.5 NP_250135 (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_243 58889 59341 - fliO 100.0 98.9 NP_250136 (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_243 58125 58892 - fliP 100.0 99.3 NP_250137 (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_243 57811 58080 - fliQ 100.0 99.6 NP_250138 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_243 57035 57811 - fliR 100.0 99.2 NP_250139 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_45 4635 6797 - fptA 100.0 99.3 NP_252911 (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_85 36964 37452 + hcp1 100.0 100.0 NP_248775 (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 33738 34772 + hsiA1 100.0 99.8 NP_248772 (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 34861 35379 + hsiB1/vipA 100.0 99.8 NP_248773 (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 35392 36888 + hsiC1/vipB 100.0 99.5 NP_248774 (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 37620 38465 + hsiE1 100.0 98.7 NP_248776 (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 38467 38976 + hsiF1 100.0 98.8 NP_248777 (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 38973 40832 + hsiG1 100.0 99.2 NP_248778 (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 40796 41842 + hsiH1 100.0 98.8 NP_248779 (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 30054 31388 - hsiJ1 100.0 99.6 NP_248769 (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 25168 28476 - icmF1/tssM1 100.0 99.1 NP_248767 (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_170 145 1401 - lasA 100.0 98.0 NP_250562 (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1]
k141_44 44265 45761 + lasB 100.0 98.5 NP_252413 (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1]
k141_243 73508 74113 - lasI 100.0 99.8 NP_250123 (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_85 31404 31868 - lip1 100.0 100.0 NP_248770 (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_141 8982 9200 - mbtH-like 100.0 100.0 NP_251102 (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_290 78990 79841 + motA 100.0 98.2 NP_253641 (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_290 79861 80904 + motB 100.0 99.3 NP_253640 (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_243 42099 42839 - motC 100.0 99.2 NP_250151 (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_243 41196 42086 - motD 100.0 98.7 NP_250152 (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_286 27622 28587 - motY 100.0 99.3 NP_252216 (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_172 38389 38973 - mucA 100.0 99.1 NP_249454 (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_172 37430 38380 - mucB 100.0 99.0 NP_249455 (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_172 36978 37433 - mucC 100.0 99.6 NP_249456 (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_172 35514 36938 - mucD 100.0 98.9 NP_249457 (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_73 10283 10552 + mucE 100.0 98.5 NP_252722 (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_251 25992 27344 + mucP 100.0 99.3 NP_252339 (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_289 15796 17226 + pchA 100.0 99.0 NP_252921 (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_289 15494 15799 + pchB 100.0 99.7 NP_252920 (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_289 14739 15494 + pchC 100.0 99.3 NP_252919 (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_289 13099 14742 + pchD 100.0 99.2 NP_252918 (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_289 7469 11785 - pchE 100.0 98.9 NP_252916 (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_289 2043 7472 - pchF 100.0 98.8 NP_252915 (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_289 997 2046 - pchG 100.0 98.9 NP_252914 (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_45 6889 8613 - pchI 100.0 99.0 NP_252912 (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_289 11979 12869 - pchR 100.0 99.0 NP_252917 (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_127 17518 17796 + pcr1 100.0 99.6 NP_250390 (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 17783 18154 + pcr2 100.0 98.9 NP_250391 (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 18151 18516 + pcr3 100.0 98.4 NP_250392 (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 18521 18850 + pcr4 100.0 99.1 NP_250393 (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 18847 20967 + pcrD 100.0 99.0 NP_250394 (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 21426 21722 + pcrG 100.0 99.7 NP_250396 (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 22625 23131 + pcrH 100.0 99.2 NP_250398 (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 20964 21398 + pcrR 100.0 99.3 NP_250395 (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 21732 22616 + pcrV 100.0 99.0 NP_250397 (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_204 184 672 + phzB1 100.0 98.6 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_205 244 678 + phzB1 89.0 89.7 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_65 4045 5262 - phzC1 100.0 99.3 NP_252901 (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_65 3425 4048 - phzD1 100.0 99.0 NP_252902 (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_65 1545 3428 - phzE1 100.0 99.2 NP_252903 (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_65 695 1531 - phzF1 100.0 99.6 NP_252904 (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_65 25 669 - phzG1 100.0 99.5 NP_252906 (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_85 669 2501 + phzH 100.0 99.1 NP_248741 (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_123 8524 9528 - phzM 100.0 99.1 NP_252898 (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_45 297 1505 + phzS 100.0 98.4 NP_252907 (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_304 24044 25743 - pilB 99.9 88.4 NP_253216 (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_148 18256 18681 - pilE 100.0 99.5 NP_253246 (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_121 49982 50740 - pilF 100.0 98.8 NP_252494 (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 42795 43202 - pilG 100.0 100.0 NP_249099 (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 42383 42748 - pilH 100.0 99.7 NP_249100 (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 41796 42332 - pilI 100.0 99.8 NP_249101 (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 39663 41711 - pilJ 100.0 99.7 NP_249102 (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 38727 39602 - pilK 100.0 99.3 NP_249103 (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_268 33501 34565 - pilM 100.0 99.5 NP_253731 (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_268 32905 33501 - pilN 100.0 99.2 NP_253730 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_268 32285 32908 - pilO 100.0 98.4 NP_253729 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_268 31764 32288 - pilP 100.0 99.4 NP_253728 (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_268 29566 31710 - pilQ 100.0 97.2 NP_253727 (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_148 26879 28216 - pilR 100.0 99.5 NP_253237 (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_148 28231 29823 - pilS 100.0 99.2 NP_253236 (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 55239 56273 - pilT 100.0 99.4 NP_249086 (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_98 53913 55061 - pilU 100.0 99.8 NP_249087 (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_148 23935 24492 - pilV 100.0 99.3 NP_253241 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_148 23114 23938 - pilW 100.0 98.9 NP_253242 (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_148 22530 23117 - pilX 100.0 99.3 NP_253243 (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_148 19027 22518 - pilY1 99.6 91.6 NP_253244 (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_148 18678 19025 - pilY2 100.0 99.1 NP_253245 (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 38101 40293 + plcH 100.0 99.6 NP_249535 (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1]
k141_127 23112 24284 + popB 100.0 99.5 NP_250399 (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 24296 25183 + popD 100.0 97.3 NP_250400 (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 16671 17537 + popN 100.0 99.4 NP_250389 (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_85 20647 23745 - ppkA 100.0 99.5 NP_248764 (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 23753 24481 - pppA 100.0 99.6 NP_248765 (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_127 28518 28940 + pscB 100.0 99.3 NP_250406 (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 28940 30742 + pscC 100.0 99.3 NP_250407 (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 30744 32042 + pscD 100.0 99.1 NP_250408 (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 32005 32208 + pscE 100.0 98.0 NP_250409 (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 32211 32468 + pscF 100.0 99.6 NP_250410 (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 32471 32818 + pscG 100.0 99.1 NP_250411 (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_180 18 445 + pscH 99.1 94.9 NP_250412 (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_180 445 783 + pscI 100.0 99.7 NP_250413 (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_180 780 1526 + pscJ 100.0 99.5 NP_250414 (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_180 1535 2155 + pscK 99.0 97.8 NP_250415 (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_180 2134 2778 + pscL 100.0 98.8 NP_250416 (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 15158 16480 - pscN 100.0 99.5 NP_250388 (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 14685 15161 - pscO 100.0 99.4 NP_250387 (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 13615 14697 - pscP 96.8 94.8 NP_250386 (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 12689 13618 - pscQ 100.0 99.1 NP_250385 (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 12039 12692 - pscR 100.0 99.4 NP_250384 (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 11770 12036 - pscS 100.0 100.0 NP_250383 (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 10985 11773 - pscT 100.0 99.1 NP_250382 (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_127 9939 10988 - pscU 100.0 98.9 NP_250381 (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_284 2389 3327 - ptxR 100.0 98.7 NP_250948 (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_14 978 1964 - pvcA 100.0 99.4 NP_250944 (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_14 85 960 - pvcB 100.0 99.0 NP_250945 (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_284 143 1645 + pvcC 100.0 98.9 NP_250946 (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_284 1638 2284 + pvcD 99.8 97.8 NP_250947 (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_109 6108 7439 + pvdA 100.0 83.3 NP_251076 (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_151 10376 11203 + pvdF 100.0 82.2 NP_251086 (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_141 36321 37085 - pvdG 100.0 98.6 NP_251115 (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_141 9278 10687 - pvdH 100.0 99.2 NP_251103 (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_141 23219 36247 - pvdL 100.0 99.1 NP_251114 (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_151 13460 14806 - pvdM 99.8 95.6 NP_251083 (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_151 12154 13437 - pvdN 100.0 99.2 NP_251084 (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_151 11271 12125 - pvdO 100.0 98.1 NP_251085 (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_151 15020 16666 + pvdP 99.8 85.0 NP_251082 (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_109 7562 9850 + pvdQ 100.0 99.3 NP_251075 (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_141 37728 38291 + pvdS 100.0 97.7 NP_251116 (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_278 2254 3141 - rhlA 100.0 99.7 NP_252169 (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_278 908 2188 - rhlB 100.0 99.8 NP_252168 (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_273 24400 25377 + rhlC 100.0 98.9 NP_249821 (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1]
k141_310 38 643 + rhlI 100.0 98.7 NP_252166 (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_85 24491 25171 - tagF/pppB 100.0 98.8 NP_248766 (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 16051 16965 - tagQ 100.0 98.0 NP_248760 (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_85 17027 18739 - tagR 100.0 99.4 NP_248761 (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 18732 19931 - tagS 100.0 99.3 NP_248762 (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 19931 20650 - tagT 100.0 98.3 NP_248763 (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_273 4973 6889 + toxA 100.0 98.8 NP_249839 (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1]
k141_170 31278 31742 + tse1 100.0 99.8 NP_250535 (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_42 34486 34962 - tse2 100.0 98.7 NP_251392 (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_278 8414 9640 + tse3 100.0 99.2 NP_252174 (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_85 44590 46521 + vgrG1a 100.0 99.2 NP_248781 (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_290 33755 35032 + waaA 100.0 99.2 NP_253675 (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_290 8000 9067 + waaC 100.0 99.2 NP_253698 (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_290 6966 8003 + waaF 100.0 99.5 NP_253699 (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_290 9064 10185 + waaG 100.0 99.2 NP_253697 (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_290 10182 10988 + waaP 100.0 99.3 NP_253696 (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_304 21944 22816 - xcpA/pilD 100.0 99.3 NP_253218 (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 7929 8636 + xcpP 100.0 99.7 NP_251794 (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 8641 10617 + xcpQ 100.0 99.0 NP_251795 (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 6201 7709 - xcpR 100.0 99.5 NP_251793 (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 4984 6201 - xcpS 100.0 99.3 NP_251792 (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 4533 4979 - xcpT 100.0 99.3 NP_251791 (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 4008 4526 - xcpU 100.0 98.5 NP_251790 (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 3622 4011 - xcpV 100.0 99.2 NP_251789 (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 2921 3625 - xcpW 98.7 98.3 NP_251788 (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 1923 2924 - xcpX 100.0 99.1 NP_251787 (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 778 1926 - xcpY 100.0 98.3 NP_251786 (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_193 252 776 - xcpZ 100.0 99.2 NP_251785 (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
166_pio
Contig Start End Strand Gene Coverage Identity Accession Product
k141_94 148235 149404 - alg44 100.0 99.7 NP_252232 (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_94 149487 150971 - alg8 100.0 99.7 NP_252231 (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_94 135770 137215 - algA 100.0 99.5 NP_252241 (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_44 64693 66042 - algB 100.0 99.8 NP_254170 (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_74 15244 16635 - algC 100.0 99.9 NP_254009 (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1]
k141_94 151111 152421 - algD 100.0 99.8 NP_252230 (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_94 145325 146797 - algE 100.0 99.7 NP_252234 (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_94 137412 138062 - algF 100.0 99.7 NP_252240 (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_94 143673 145304 - algG 100.0 99.7 NP_252235 (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_94 139325 140887 - algI 100.0 99.6 NP_252238 (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_94 138135 139310 - algJ 100.0 99.5 NP_252239 (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_94 146794 148221 - algK 100.0 99.7 NP_252233 (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_94 141129 142232 - algL 100.0 99.7 NP_252237 (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_10 12266 13312 + algP/algR3 98.9 96.7 NP_253940 (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_10 10967 11449 + algQ 100.0 98.8 NP_253942 (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_10 5077 5823 + algR 100.0 99.3 NP_253948 (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_145 37953 38534 - algU 100.0 99.1 NP_249453 (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_177 22471 23640 - algW 100.0 99.1 NP_253136 (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_94 142236 143660 - algX 100.0 99.5 NP_252236 (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_10 3996 5072 + algZ 100.0 99.6 NP_253949 (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_242 6157 7596 + aprA 100.0 99.3 NP_249940 (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1]
k141_265 25085 32515 + chpA 99.9 98.7 NP_249104 (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 32508 33539 + chpB 100.0 99.0 NP_249105 (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 33536 34042 + chpC 100.0 98.8 NP_249106 (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 34050 34844 + chpD 100.0 99.2 NP_249107 (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 34920 35531 + chpE 100.0 98.9 NP_249108 (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_243 48215 50923 - clpV1 100.0 99.2 NP_248780 (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 62711 64060 + dotU1 100.0 99.7 NP_248768 (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_253 5598 6971 - exoT 100.0 99.2 NP_248734 (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1]
k141_24 95305 97368 - exoU 100.0 100.0 AAC16023 (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103]
k141_212 29955 31090 + exoY 99.9 99.0 NP_250881 (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]
k141_285 24582 25418 - exsA 100.0 99.6 NP_250404 (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 25716 26129 - exsB 100.0 98.3 NP_250403 (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 26392 26829 - exsC 100.0 98.4 NP_250401 (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 23654 24484 - exsD 100.0 98.8 NP_250405 (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 26138 26383 - exsE 100.0 97.2 NP_250402 (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_243 59388 60845 + fha1 97.6 96.7 NP_248771 (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_162 15730 16239 + fimT 100.0 97.1 NP_253239 (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 16345 16851 + fimU 100.0 99.2 NP_253240 (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_290 13756 16530 + fimV 100.0 98.3 NP_251805 (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_232 57689 58531 + fleN 100.0 98.9 NP_250145 (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 32734 34206 - fleQ 100.0 99.2 NP_249788 (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 29993 31408 - fleR 99.6 98.9 NP_249790 (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 31413 32621 - fleS 100.0 99.1 NP_249789 (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_283 10676 11374 + flgA 100.0 98.3 NP_252040 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_3 60613 61020 - flgB 100.0 100.0 NP_249768 (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_3 60167 60607 - flgC 100.0 99.8 NP_249769 (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 59441 60154 - flgD 100.0 99.6 NP_249770 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 58025 59413 - flgE 100.0 99.4 NP_249771 (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 57059 57808 - flgF 100.0 99.3 NP_249772 (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 56227 57012 - flgG 100.0 99.5 NP_249773 (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 55486 56181 - flgH 100.0 98.8 NP_249774 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 54365 55474 - flgI 100.0 99.4 NP_249775 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 53152 54354 - flgJ 100.0 99.1 NP_249776 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 51085 53133 - flgK 99.7 86.7 NP_249777 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_283 11519 11842 + flgM 100.0 98.2 NP_252041 (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_283 11897 12367 + flgN 100.0 98.7 NP_252042 (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_232 54054 56177 + flhA 100.0 99.3 NP_250143 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_232 50073 51209 + flhB 100.0 99.7 NP_250140 (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_232 56261 57550 + flhF 100.0 99.5 NP_250144 (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_232 58528 59271 + fliA 100.0 99.7 NP_250146 (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_3 29417 29746 - fliE 100.0 99.7 NP_249791 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 27598 29394 - fliF 100.0 99.5 NP_249792 (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 26576 27592 - fliG 100.0 99.6 NP_249793 (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 25768 26574 - fliH 100.0 99.1 NP_249794 (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 24423 25778 - fliI 100.0 99.1 NP_249795 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_3 23966 24409 - fliJ 100.0 99.1 NP_249796 (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_232 44234 45517 + fliK 100.0 98.2 NP_250132 (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_232 45761 46282 + fliL 100.0 100.0 NP_250133 (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_232 46290 47261 + fliM 100.0 99.9 NP_250134 (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_232 47289 47762 + fliN 100.0 98.5 NP_250135 (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_232 47764 48216 + fliO 100.0 98.9 NP_250136 (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_232 48213 48980 + fliP 100.0 99.3 NP_250137 (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_232 49025 49294 + fliQ 100.0 99.6 NP_250138 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_232 49294 50070 + fliR 100.0 99.2 NP_250139 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_126 4635 6797 - fptA 100.0 99.3 NP_252911 (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_243 55306 55794 - hcp1 100.0 100.0 NP_248775 (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 57986 59020 - hsiA1 100.0 99.8 NP_248772 (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 57379 57897 - hsiB1/vipA 100.0 99.8 NP_248773 (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 55870 57366 - hsiC1/vipB 100.0 99.5 NP_248774 (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 54293 55138 - hsiE1 100.0 98.7 NP_248776 (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 53782 54291 - hsiF1 100.0 98.8 NP_248777 (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 51926 53785 - hsiG1 100.0 99.2 NP_248778 (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 50916 51962 - hsiH1 100.0 98.8 NP_248779 (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 61370 62704 + hsiJ1 100.0 99.6 NP_248769 (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 64282 67590 + icmF1/tssM1 100.0 99.1 NP_248767 (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_221 131 1387 - lasA 100.0 98.0 NP_250562 (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1]
k141_139 15802 17298 + lasB 100.0 98.5 NP_252413 (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1]
k141_232 32992 33597 + lasI 100.0 99.8 NP_250123 (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_243 60890 61354 + lip1 100.0 100.0 NP_248770 (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_134 8982 9200 - mbtH-like 100.0 100.0 NP_251102 (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_73 20285 21136 + motA 100.0 98.2 NP_253641 (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_73 21156 22199 + motB 100.0 99.3 NP_253640 (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_232 64266 65006 + motC 100.0 99.2 NP_250151 (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_232 65019 65909 + motD 100.0 98.7 NP_250152 (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_94 168287 169252 + motY 100.0 99.3 NP_252216 (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_145 37337 37921 - mucA 100.0 99.1 NP_249454 (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_145 36378 37328 - mucB 100.0 99.0 NP_249455 (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_145 35926 36381 - mucC 100.0 99.6 NP_249456 (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_145 34462 35886 - mucD 100.0 98.9 NP_249457 (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_224 10291 10560 + mucE 100.0 98.5 NP_252722 (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_94 25999 27351 + mucP 100.0 99.3 NP_252339 (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_206 6322 7752 - pchA 100.0 99.0 NP_252921 (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_206 7749 8054 - pchB 100.0 99.7 NP_252920 (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_206 8054 8809 - pchC 100.0 99.3 NP_252919 (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_206 8806 10449 - pchD 100.0 99.2 NP_252918 (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_206 11763 15718 + pchE 91.6 98.4 NP_252916 (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_252 2003 7432 - pchF 100.0 98.8 NP_252915 (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_252 957 2006 - pchG 100.0 98.9 NP_252914 (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_126 6889 8613 - pchI 100.0 99.0 NP_252912 (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_206 10679 11569 + pchR 100.0 99.0 NP_252917 (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_285 34342 34620 - pcr1 100.0 99.6 NP_250390 (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 33984 34355 - pcr2 100.0 98.9 NP_250391 (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 33622 33987 - pcr3 100.0 98.4 NP_250392 (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 33288 33617 - pcr4 100.0 99.1 NP_250393 (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 31171 33291 - pcrD 100.0 99.0 NP_250394 (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 30416 30712 - pcrG 100.0 99.7 NP_250396 (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 29007 29513 - pcrH 100.0 99.2 NP_250398 (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 30740 31174 - pcrR 100.0 99.3 NP_250395 (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 29522 30406 - pcrV 100.0 99.0 NP_250397 (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_35 244 678 + phzB1 89.0 89.7 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_78 184 672 + phzB1 100.0 98.6 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_66 4045 5262 - phzC1 100.0 99.3 NP_252901 (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_66 3425 4048 - phzD1 100.0 99.4 NP_252902 (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_66 1545 3428 - phzE1 100.0 99.2 NP_252903 (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_66 695 1531 - phzF1 100.0 99.5 NP_252904 (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_66 25 669 - phzG1 100.0 99.7 NP_252906 (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_147 20480 22312 - phzH 100.0 99.1 NP_248741 (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_121 46143 47147 - phzM 100.0 99.1 NP_252898 (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_126 297 1505 + phzS 100.0 98.4 NP_252907 (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_142 31592 33291 + pilB 99.9 88.4 NP_253216 (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 22653 23078 + pilE 100.0 99.5 NP_253246 (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_263 36865 37623 - pilF 100.0 98.8 NP_252494 (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 20598 21005 + pilG 100.0 100.0 NP_249099 (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 21052 21417 + pilH 100.0 99.7 NP_249100 (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 21468 22004 + pilI 100.0 99.8 NP_249101 (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 22089 24137 + pilJ 100.0 99.7 NP_249102 (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 24198 25073 + pilK 100.0 99.3 NP_249103 (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_89 26847 27911 - pilM 100.0 99.5 NP_253731 (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_89 26251 26847 - pilN 100.0 99.2 NP_253730 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_89 25631 26254 - pilO 100.0 98.4 NP_253729 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_89 25110 25634 - pilP 100.0 99.4 NP_253728 (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_89 22912 25056 - pilQ 100.0 97.2 NP_253727 (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 13118 14455 + pilR 100.0 99.5 NP_253237 (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 11511 13103 + pilS 100.0 99.2 NP_253236 (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 7527 8561 + pilT 100.0 99.4 NP_249086 (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_265 8739 9887 + pilU 100.0 99.8 NP_249087 (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 16842 17399 + pilV 100.0 99.3 NP_253241 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 17396 18220 + pilW 100.0 98.9 NP_253242 (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 18217 18804 + pilX 100.0 99.3 NP_253243 (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 18816 22307 + pilY1 99.6 91.6 NP_253244 (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_162 22309 22656 + pilY2 100.0 99.1 NP_253245 (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_20 48104 50296 + plcH 100.0 99.6 NP_249535 (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1]
k141_285 27854 29026 - popB 100.0 99.5 NP_250399 (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 26955 27842 - popD 100.0 97.3 NP_250400 (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 34601 35467 - popN 100.0 99.4 NP_250389 (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_243 68277 69005 + pppA 100.0 99.6 NP_248765 (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_285 23198 23620 - pscB 100.0 99.3 NP_250406 (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 21396 23198 - pscC 100.0 99.3 NP_250407 (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 20096 21394 - pscD 100.0 99.1 NP_250408 (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 19930 20133 - pscE 100.0 98.0 NP_250409 (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 19670 19927 - pscF 100.0 99.6 NP_250410 (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 19320 19667 - pscG 100.0 99.1 NP_250411 (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 18892 19323 - pscH 100.0 99.1 NP_250412 (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 18554 18892 - pscI 100.0 99.7 NP_250413 (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 17811 18557 - pscJ 100.0 99.5 NP_250414 (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 17182 17802 - pscK 99.0 97.8 NP_250415 (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 16559 17203 - pscL 100.0 98.8 NP_250416 (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 35658 36980 + pscN 100.0 99.5 NP_250388 (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 36977 37453 + pscO 100.0 99.4 NP_250387 (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 37441 38523 + pscP 96.8 94.8 NP_250386 (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 38520 39449 + pscQ 100.0 99.1 NP_250385 (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 39446 40099 + pscR 100.0 99.4 NP_250384 (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 40102 40368 + pscS 100.0 100.0 NP_250383 (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 40365 41153 + pscT 100.0 99.1 NP_250382 (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_285 41150 42199 + pscU 100.0 98.9 NP_250381 (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_41 2396 3334 - ptxR 100.0 98.7 NP_250948 (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_238 968 1954 - pvcA 100.0 99.4 NP_250944 (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_238 75 950 - pvcB 100.0 99.0 NP_250945 (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_41 150 1652 + pvcC 100.0 98.9 NP_250946 (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_41 1645 2291 + pvcD 99.8 97.8 NP_250947 (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_193 6114 7445 + pvdA 100.0 83.3 NP_251076 (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_191 10376 11203 + pvdF 100.0 82.2 NP_251086 (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_134 36321 37085 - pvdG 100.0 98.6 NP_251115 (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_134 9278 10687 - pvdH 100.0 99.2 NP_251103 (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_134 23219 36247 - pvdL 100.0 99.1 NP_251114 (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_191 13460 14806 - pvdM 99.8 95.6 NP_251083 (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_191 12154 13437 - pvdN 100.0 99.2 NP_251084 (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_191 11271 12125 - pvdO 100.0 98.1 NP_251085 (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_191 15020 16666 + pvdP 99.8 85.0 NP_251082 (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_193 7568 9856 + pvdQ 100.0 99.3 NP_251075 (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_134 37728 38291 + pvdS 100.0 97.7 NP_251116 (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_270 2368 3255 - rhlA 100.0 99.7 NP_252169 (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_270 1022 2302 - rhlB 100.0 99.8 NP_252168 (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_82 17682 18659 + rhlC 100.0 98.9 NP_249821 (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1]
k141_225 17785 18390 - rhlI 100.0 98.7 NP_252166 (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_243 67587 68267 + tagF/pppB 100.0 98.8 NP_248766 (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_147 6016 6930 + tagQ 100.0 98.0 NP_248760 (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_147 4242 5954 + tagR 100.0 99.4 NP_248761 (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_147 3050 4249 + tagS 100.0 99.3 NP_248762 (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_147 2331 3050 + tagT 100.0 98.3 NP_248763 (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_251 4973 6889 + toxA 100.0 98.8 NP_249839 (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1]
k141_221 31264 31728 + tse1 100.0 99.8 NP_250535 (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_136 171907 172383 + tse2 100.0 98.7 NP_251392 (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_270 8528 9754 + tse3 100.0 99.2 NP_252174 (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_243 46237 48168 - vgrG1a 100.0 99.2 NP_248781 (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_243 41291 43516 - vgrG1b 100.0 98.7 NP_248785 (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_281 14062 15339 - waaA 100.0 99.2 NP_253675 (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_281 40027 41094 - waaC 100.0 99.2 NP_253698 (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_281 41091 42128 - waaF 100.0 99.5 NP_253699 (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_281 38909 40030 - waaG 100.0 99.2 NP_253697 (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_281 38106 38912 - waaP 100.0 99.3 NP_253696 (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_142 34519 35391 + xcpA/pilD 100.0 99.3 NP_253218 (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_54 11093 11800 - xcpP 100.0 99.7 NP_251794 (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 9112 11088 - xcpQ 100.0 99.0 NP_251795 (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 12020 13528 + xcpR 100.0 99.5 NP_251793 (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 13528 14745 + xcpS 100.0 99.3 NP_251792 (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 14750 15196 + xcpT 100.0 99.3 NP_251791 (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 15203 15721 + xcpU 100.0 98.5 NP_251790 (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 15718 16107 + xcpV 100.0 99.2 NP_251789 (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 16104 16808 + xcpW 98.7 98.3 NP_251788 (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 16805 17806 + xcpX 100.0 99.1 NP_251787 (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 17803 18951 + xcpY 100.0 98.3 NP_251786 (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_54 18953 19477 + xcpZ 100.0 99.2 NP_251785 (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
168_pio
Contig Start End Strand Gene Coverage Identity Accession Product
k141_132 3995 5164 + alg44 100.0 99.7 NP_252232 (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 2428 3912 + alg8 100.0 99.7 NP_252231 (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 16184 17629 + algA 100.0 99.5 NP_252241 (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_97 13776 15125 - algB 100.0 99.8 NP_254170 (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_112 104663 106054 + algC 100.0 99.9 NP_254009 (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1]
k141_132 978 2288 + algD 100.0 99.8 NP_252230 (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 6602 8074 + algE 100.0 99.7 NP_252234 (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 15337 15987 + algF 100.0 99.7 NP_252240 (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 8095 9726 + algG 100.0 99.7 NP_252235 (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 12512 14074 + algI 100.0 99.6 NP_252238 (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 14089 15264 + algJ 100.0 99.5 NP_252239 (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 5178 6605 + algK 100.0 99.7 NP_252233 (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 11167 12270 + algL 100.0 99.7 NP_252237 (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_205 12266 13312 + algP/algR3 98.9 96.7 NP_253940 (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_205 10967 11449 + algQ 100.0 98.8 NP_253942 (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_205 5077 5823 + algR 100.0 99.3 NP_253948 (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_175 3969 4550 + algU 100.0 99.1 NP_249453 (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_70 22461 23630 - algW 100.0 99.1 NP_253136 (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_132 9739 11163 + algX 100.0 99.5 NP_252236 (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_205 3996 5072 + algZ 100.0 99.6 NP_253949 (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_168 5204 6643 - aprA 100.0 99.3 NP_249940 (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1]
k141_68 31263 38693 - chpA 99.9 98.7 NP_249104 (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 30239 31270 - chpB 100.0 99.0 NP_249105 (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 29736 30242 - chpC 100.0 98.8 NP_249106 (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 28934 29728 - chpD 100.0 99.2 NP_249107 (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 28247 28858 - chpE 100.0 98.9 NP_249108 (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 19035 21743 + clpV1 100.0 99.2 NP_248780 (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 5898 7247 - dotU1 100.0 99.7 NP_248768 (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_163 5550 6923 - exoT 100.0 99.2 NP_248734 (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1]
k141_22 1069 3132 + exoU 100.0 100.0 AAC16023 (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103]
k141_66 30033 31168 + exoY 99.9 99.0 NP_250881 (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]
k141_269 26599 27435 + exsA 100.0 99.6 NP_250404 (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 25888 26301 + exsB 100.0 98.3 NP_250403 (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 25188 25625 + exsC 100.0 98.4 NP_250401 (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 27533 28363 + exsD 100.0 98.8 NP_250405 (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 25634 25879 + exsE 100.0 97.2 NP_250402 (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_193 9113 10570 - fha1 97.6 96.7 NP_248771 (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_188 25075 25584 - fimT 100.0 97.1 NP_253239 (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 24463 24969 - fimU 100.0 99.2 NP_253240 (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_239 19722 22496 - fimV 100.0 98.3 NP_251805 (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_78 29137 29979 + fleN 100.0 98.9 NP_250145 (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 23564 25036 - fleQ 100.0 99.2 NP_249788 (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 20823 22238 - fleR 99.6 98.9 NP_249790 (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 22243 23451 - fleS 100.0 99.1 NP_249789 (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_245 26379 27077 + flgA 100.0 98.3 NP_252040 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_28 51443 51850 - flgB 100.0 100.0 NP_249768 (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_28 50997 51437 - flgC 100.0 99.8 NP_249769 (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 50271 50984 - flgD 100.0 99.6 NP_249770 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 48855 50243 - flgE 100.0 99.4 NP_249771 (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 47889 48638 - flgF 100.0 99.3 NP_249772 (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 47057 47842 - flgG 100.0 99.5 NP_249773 (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 46316 47011 - flgH 100.0 98.8 NP_249774 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 45195 46304 - flgI 100.0 99.4 NP_249775 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 43982 45184 - flgJ 100.0 99.1 NP_249776 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 41915 43963 - flgK 99.7 86.7 NP_249777 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_245 27222 27545 + flgM 100.0 98.2 NP_252041 (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_245 27600 28070 + flgN 100.0 98.7 NP_252042 (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 25502 27625 + flhA 100.0 99.3 NP_250143 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 21521 22657 + flhB 100.0 99.7 NP_250140 (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 27709 28998 + flhF 100.0 99.5 NP_250144 (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 29976 30719 + fliA 100.0 99.7 NP_250146 (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_28 20247 20576 - fliE 100.0 99.7 NP_249791 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 18428 20224 - fliF 100.0 99.5 NP_249792 (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 17406 18422 - fliG 100.0 99.6 NP_249793 (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 16598 17404 - fliH 100.0 99.1 NP_249794 (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 15253 16608 - fliI 100.0 99.1 NP_249795 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 14796 15239 - fliJ 100.0 99.1 NP_249796 (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 15682 16965 + fliK 100.0 98.2 NP_250132 (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 17209 17730 + fliL 100.0 100.0 NP_250133 (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 17738 18709 + fliM 100.0 99.9 NP_250134 (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 18737 19210 + fliN 100.0 98.5 NP_250135 (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 19212 19664 + fliO 100.0 98.9 NP_250136 (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 19661 20428 + fliP 100.0 99.3 NP_250137 (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 20473 20742 + fliQ 100.0 99.6 NP_250138 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 20742 21518 + fliR 100.0 99.2 NP_250139 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_89 4635 6797 - fptA 100.0 99.3 NP_252911 (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_193 14164 14652 + hcp1 100.0 100.0 NP_248775 (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 10938 11972 + hsiA1 100.0 99.8 NP_248772 (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 12061 12579 + hsiB1/vipA 100.0 99.8 NP_248773 (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 12592 14088 + hsiC1/vipB 100.0 99.5 NP_248774 (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 14820 15665 + hsiE1 100.0 98.7 NP_248776 (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 15667 16176 + hsiF1 100.0 98.8 NP_248777 (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 16173 18032 + hsiG1 100.0 99.2 NP_248778 (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 17996 19042 + hsiH1 100.0 98.8 NP_248779 (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 7254 8588 - hsiJ1 100.0 99.6 NP_248769 (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 2368 5676 - icmF1/tssM1 100.0 99.1 NP_248767 (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 35846 37102 - lasA 100.0 98.0 NP_250562 (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1]
k141_176 9058 10554 - lasB 100.0 98.5 NP_252413 (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1]
k141_78 4440 5045 + lasI 100.0 99.8 NP_250123 (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_193 8604 9068 - lip1 100.0 100.0 NP_248770 (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_66 129026 129244 + mbtH-like 100.0 100.0 NP_251102 (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_172 105414 106265 - motA 100.0 98.2 NP_253641 (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_172 104351 105394 - motB 100.0 99.3 NP_253640 (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 35714 36454 + motC 100.0 99.2 NP_250151 (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 36467 37357 + motD 100.0 98.7 NP_250152 (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_142 15052 16017 + motY 100.0 99.3 NP_252216 (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_175 4582 5166 + mucA 100.0 99.1 NP_249454 (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_175 5175 6125 + mucB 100.0 99.0 NP_249455 (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_175 6122 6577 + mucC 100.0 99.6 NP_249456 (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_175 6617 8041 + mucD 100.0 98.9 NP_249457 (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_105 10260 10529 + mucE 100.0 98.5 NP_252722 (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_132 126104 127456 - mucP 100.0 99.3 NP_252339 (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_254 7915 9345 + pchA 100.0 99.0 NP_252921 (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 7613 7918 + pchB 100.0 99.7 NP_252920 (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 6858 7613 + pchC 100.0 99.3 NP_252919 (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 5218 6861 + pchD 100.0 99.2 NP_252918 (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 4 3904 - pchE 90.4 98.7 NP_252916 (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_144 2013 7442 - pchF 100.0 98.8 NP_252915 (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_144 967 2016 - pchG 100.0 98.9 NP_252914 (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_89 6889 8613 - pchI 100.0 99.0 NP_252912 (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 4098 4988 - pchR 100.0 99.0 NP_252917 (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_269 17397 17675 + pcr1 100.0 99.6 NP_250390 (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 17662 18033 + pcr2 100.0 98.9 NP_250391 (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 18030 18395 + pcr3 100.0 98.4 NP_250392 (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 18400 18729 + pcr4 100.0 99.1 NP_250393 (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 18726 20846 + pcrD 100.0 99.0 NP_250394 (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 21305 21601 + pcrG 100.0 99.7 NP_250396 (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 22504 23010 + pcrH 100.0 99.2 NP_250398 (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 20843 21277 + pcrR 100.0 99.3 NP_250395 (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 21611 22495 + pcrV 100.0 99.0 NP_250397 (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_227 184 672 + phzB1 100.0 98.6 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_228 244 678 + phzB1 89.0 89.7 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 4045 5262 - phzC1 100.0 99.3 NP_252901 (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 3425 4048 - phzD1 100.0 99.2 NP_252902 (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 1545 3428 - phzE1 100.0 99.0 NP_252903 (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 695 1531 - phzF1 100.0 99.3 NP_252904 (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 25 669 - phzG1 100.0 99.7 NP_252906 (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_42 20349 22181 - phzH 100.0 99.1 NP_248741 (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_86 11332 12336 - phzM 100.0 99.1 NP_252898 (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_89 297 1505 + phzS 100.0 98.4 NP_252907 (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_6 37133 38832 + pilB 99.9 88.4 NP_253216 (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 18236 18661 - pilE 100.0 99.5 NP_253246 (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_176 104590 105348 - pilF 100.0 98.8 NP_252494 (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 42773 43180 - pilG 100.0 100.0 NP_249099 (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 42361 42726 - pilH 100.0 99.7 NP_249100 (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 41774 42310 - pilI 100.0 99.8 NP_249101 (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 39641 41689 - pilJ 100.0 99.7 NP_249102 (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 38705 39580 - pilK 100.0 99.3 NP_249103 (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 13857 14921 + pilM 100.0 99.5 NP_253731 (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 14921 15517 + pilN 100.0 99.2 NP_253730 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 15514 16137 + pilO 100.0 98.4 NP_253729 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 16134 16658 + pilP 100.0 99.4 NP_253728 (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 16712 18856 + pilQ 100.0 97.2 NP_253727 (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 26859 28196 - pilR 100.0 99.5 NP_253237 (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 28211 29803 - pilS 100.0 99.2 NP_253236 (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_291 7825 8859 + pilT 100.0 99.4 NP_249086 (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_291 9037 10185 + pilU 100.0 99.8 NP_249087 (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 23915 24472 - pilV 100.0 99.3 NP_253241 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 23094 23918 - pilW 100.0 98.9 NP_253242 (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 22510 23097 - pilX 100.0 99.3 NP_253243 (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 19007 22498 - pilY1 99.6 91.6 NP_253244 (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 18658 19005 - pilY2 100.0 99.1 NP_253245 (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_179 45365 47557 - plcH 100.0 99.6 NP_249535 (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1]
k141_269 22991 24163 + popB 100.0 99.5 NP_250399 (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 24175 25062 + popD 100.0 97.3 NP_250400 (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 16550 17416 + popN 100.0 99.4 NP_250389 (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_193 953 1681 - pppA 100.0 99.6 NP_248765 (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_269 28397 28819 + pscB 100.0 99.3 NP_250406 (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 28819 30621 + pscC 100.0 99.3 NP_250407 (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 30623 31921 + pscD 100.0 99.1 NP_250408 (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 31884 32087 + pscE 100.0 98.0 NP_250409 (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 32090 32347 + pscF 100.0 99.6 NP_250410 (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 32350 32697 + pscG 100.0 99.1 NP_250411 (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 32694 33125 + pscH 100.0 99.3 NP_250412 (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 33125 33463 + pscI 100.0 99.7 NP_250413 (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 33460 34206 + pscJ 100.0 99.5 NP_250414 (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 34215 34835 + pscK 99.0 97.8 NP_250415 (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 34814 35458 + pscL 100.0 98.8 NP_250416 (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 15037 16359 - pscN 100.0 99.5 NP_250388 (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 14564 15040 - pscO 100.0 99.4 NP_250387 (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 13494 14576 - pscP 96.8 94.8 NP_250386 (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 12568 13497 - pscQ 100.0 99.1 NP_250385 (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 11918 12571 - pscR 100.0 99.4 NP_250384 (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 11649 11915 - pscS 100.0 100.0 NP_250383 (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 10864 11652 - pscT 100.0 99.1 NP_250382 (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 9818 10867 - pscU 100.0 98.9 NP_250381 (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_197 2393 3331 - ptxR 100.0 98.7 NP_250948 (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_171 7727 8713 - pvcA 100.0 99.4 NP_250944 (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_171 6834 7709 - pvcB 100.0 99.0 NP_250945 (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_197 147 1649 + pvcC 100.0 98.9 NP_250946 (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_197 1642 2288 + pvcD 99.8 97.8 NP_250947 (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 5381 6701 - pvdA 99.2 82.7 NP_251076 (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_222 18661 19488 - pvdF 100.0 82.2 NP_251086 (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_287 22173 22937 - pvdG 100.0 98.6 NP_251115 (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_66 127539 128948 + pvdH 100.0 99.2 NP_251103 (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_287 9071 22099 - pvdL 100.0 99.1 NP_251114 (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 15058 16404 + pvdM 99.8 95.6 NP_251083 (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 16427 17710 + pvdN 100.0 99.2 NP_251084 (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 17739 18593 + pvdO 100.0 98.1 NP_251085 (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 13198 14844 - pvdP 99.8 85.0 NP_251082 (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 2970 5258 - pvdQ 100.0 99.3 NP_251075 (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_287 23580 24143 + pvdS 100.0 97.7 NP_251116 (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_210 7314 8201 + rhlA 100.0 99.7 NP_252169 (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_210 8267 9547 + rhlB 100.0 99.8 NP_252168 (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_273 584 1561 - rhlC 100.0 98.9 NP_249821 (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1]
k141_248 23432 24037 - rhlI 100.0 98.7 NP_252166 (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_193 1691 2371 - tagF/pppB 100.0 98.8 NP_248766 (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_42 5885 6799 + tagQ 100.0 98.0 NP_248760 (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_42 4111 5823 + tagR 100.0 99.4 NP_248761 (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_42 2919 4118 + tagS 100.0 99.3 NP_248762 (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_42 2200 2919 + tagT 100.0 98.3 NP_248763 (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_29 4973 6889 + toxA 100.0 98.8 NP_249839 (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1]
k141_85 66979 67443 + tse1 100.0 99.8 NP_250535 (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_48 16019 16495 - tse2 100.0 98.7 NP_251392 (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_210 815 2041 - tse3 100.0 99.2 NP_252174 (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_193 21790 23721 + vgrG1a 100.0 99.2 NP_248781 (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 26442 28667 + vgrG1b 100.0 98.7 NP_248785 (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_149 14078 15355 - waaA 100.0 99.2 NP_253675 (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_149 40043 41110 - waaC 100.0 99.2 NP_253698 (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_149 41107 42144 - waaF 100.0 99.5 NP_253699 (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_149 38925 40046 - waaG 100.0 99.2 NP_253697 (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_149 38122 38928 - waaP 100.0 99.3 NP_253696 (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_6 40060 40932 + xcpA/pilD 100.0 99.3 NP_253218 (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_239 7929 8636 + xcpP 100.0 99.7 NP_251794 (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 8641 10617 + xcpQ 100.0 99.0 NP_251795 (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 6201 7709 - xcpR 100.0 99.5 NP_251793 (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 4984 6201 - xcpS 100.0 99.3 NP_251792 (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 4533 4979 - xcpT 100.0 99.3 NP_251791 (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 4008 4526 - xcpU 100.0 98.5 NP_251790 (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 3622 4011 - xcpV 100.0 99.2 NP_251789 (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 2921 3625 - xcpW 98.7 98.3 NP_251788 (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 1923 2924 - xcpX 100.0 99.1 NP_251787 (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 778 1926 - xcpY 100.0 98.3 NP_251786 (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 252 776 - xcpZ 100.0 99.2 NP_251785 (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
pseudomonas.gbk
## Error in read.table("pseudomonas.gbk_vfdb.tab", header = T, sep = "\t", : no lines available in input
Contig Start End Strand Gene Coverage Identity Accession Product
k141_132 3995 5164 + alg44 100.0 99.7 NP_252232 (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 2428 3912 + alg8 100.0 99.7 NP_252231 (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 16184 17629 + algA 100.0 99.5 NP_252241 (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_97 13776 15125 - algB 100.0 99.8 NP_254170 (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_112 104663 106054 + algC 100.0 99.9 NP_254009 (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1]
k141_132 978 2288 + algD 100.0 99.8 NP_252230 (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 6602 8074 + algE 100.0 99.7 NP_252234 (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 15337 15987 + algF 100.0 99.7 NP_252240 (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 8095 9726 + algG 100.0 99.7 NP_252235 (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 12512 14074 + algI 100.0 99.6 NP_252238 (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 14089 15264 + algJ 100.0 99.5 NP_252239 (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 5178 6605 + algK 100.0 99.7 NP_252233 (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_132 11167 12270 + algL 100.0 99.7 NP_252237 (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_205 12266 13312 + algP/algR3 98.9 96.7 NP_253940 (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_205 10967 11449 + algQ 100.0 98.8 NP_253942 (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_205 5077 5823 + algR 100.0 99.3 NP_253948 (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_175 3969 4550 + algU 100.0 99.1 NP_249453 (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_70 22461 23630 - algW 100.0 99.1 NP_253136 (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_132 9739 11163 + algX 100.0 99.5 NP_252236 (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_205 3996 5072 + algZ 100.0 99.6 NP_253949 (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_168 5204 6643 - aprA 100.0 99.3 NP_249940 (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1]
k141_68 31263 38693 - chpA 99.9 98.7 NP_249104 (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 30239 31270 - chpB 100.0 99.0 NP_249105 (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 29736 30242 - chpC 100.0 98.8 NP_249106 (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 28934 29728 - chpD 100.0 99.2 NP_249107 (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 28247 28858 - chpE 100.0 98.9 NP_249108 (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_193 19035 21743 + clpV1 100.0 99.2 NP_248780 (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 5898 7247 - dotU1 100.0 99.7 NP_248768 (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_163 5550 6923 - exoT 100.0 99.2 NP_248734 (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1]
k141_22 1069 3132 + exoU 100.0 100.0 AAC16023 (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103]
k141_66 30033 31168 + exoY 99.9 99.0 NP_250881 (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]
k141_269 26599 27435 + exsA 100.0 99.6 NP_250404 (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 25888 26301 + exsB 100.0 98.3 NP_250403 (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 25188 25625 + exsC 100.0 98.4 NP_250401 (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 27533 28363 + exsD 100.0 98.8 NP_250405 (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 25634 25879 + exsE 100.0 97.2 NP_250402 (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_193 9113 10570 - fha1 97.6 96.7 NP_248771 (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_188 25075 25584 - fimT 100.0 97.1 NP_253239 (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 24463 24969 - fimU 100.0 99.2 NP_253240 (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_239 19722 22496 - fimV 100.0 98.3 NP_251805 (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_78 29137 29979 + fleN 100.0 98.9 NP_250145 (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 23564 25036 - fleQ 100.0 99.2 NP_249788 (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 20823 22238 - fleR 99.6 98.9 NP_249790 (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 22243 23451 - fleS 100.0 99.1 NP_249789 (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_245 26379 27077 + flgA 100.0 98.3 NP_252040 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_28 51443 51850 - flgB 100.0 100.0 NP_249768 (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_28 50997 51437 - flgC 100.0 99.8 NP_249769 (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 50271 50984 - flgD 100.0 99.6 NP_249770 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 48855 50243 - flgE 100.0 99.4 NP_249771 (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 47889 48638 - flgF 100.0 99.3 NP_249772 (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 47057 47842 - flgG 100.0 99.5 NP_249773 (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 46316 47011 - flgH 100.0 98.8 NP_249774 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 45195 46304 - flgI 100.0 99.4 NP_249775 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 43982 45184 - flgJ 100.0 99.1 NP_249776 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 41915 43963 - flgK 99.7 86.7 NP_249777 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_245 27222 27545 + flgM 100.0 98.2 NP_252041 (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_245 27600 28070 + flgN 100.0 98.7 NP_252042 (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 25502 27625 + flhA 100.0 99.3 NP_250143 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 21521 22657 + flhB 100.0 99.7 NP_250140 (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 27709 28998 + flhF 100.0 99.5 NP_250144 (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 29976 30719 + fliA 100.0 99.7 NP_250146 (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_28 20247 20576 - fliE 100.0 99.7 NP_249791 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 18428 20224 - fliF 100.0 99.5 NP_249792 (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 17406 18422 - fliG 100.0 99.6 NP_249793 (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 16598 17404 - fliH 100.0 99.1 NP_249794 (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 15253 16608 - fliI 100.0 99.1 NP_249795 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_28 14796 15239 - fliJ 100.0 99.1 NP_249796 (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 15682 16965 + fliK 100.0 98.2 NP_250132 (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 17209 17730 + fliL 100.0 100.0 NP_250133 (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 17738 18709 + fliM 100.0 99.9 NP_250134 (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 18737 19210 + fliN 100.0 98.5 NP_250135 (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 19212 19664 + fliO 100.0 98.9 NP_250136 (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 19661 20428 + fliP 100.0 99.3 NP_250137 (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 20473 20742 + fliQ 100.0 99.6 NP_250138 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_78 20742 21518 + fliR 100.0 99.2 NP_250139 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1]
k141_89 4635 6797 - fptA 100.0 99.3 NP_252911 (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_193 14164 14652 + hcp1 100.0 100.0 NP_248775 (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 10938 11972 + hsiA1 100.0 99.8 NP_248772 (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 12061 12579 + hsiB1/vipA 100.0 99.8 NP_248773 (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 12592 14088 + hsiC1/vipB 100.0 99.5 NP_248774 (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 14820 15665 + hsiE1 100.0 98.7 NP_248776 (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 15667 16176 + hsiF1 100.0 98.8 NP_248777 (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 16173 18032 + hsiG1 100.0 99.2 NP_248778 (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 17996 19042 + hsiH1 100.0 98.8 NP_248779 (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 7254 8588 - hsiJ1 100.0 99.6 NP_248769 (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 2368 5676 - icmF1/tssM1 100.0 99.1 NP_248767 (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_85 35846 37102 - lasA 100.0 98.0 NP_250562 (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1]
k141_176 9058 10554 - lasB 100.0 98.5 NP_252413 (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1]
k141_78 4440 5045 + lasI 100.0 99.8 NP_250123 (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_193 8604 9068 - lip1 100.0 100.0 NP_248770 (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_66 129026 129244 + mbtH-like 100.0 100.0 NP_251102 (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_172 105414 106265 - motA 100.0 98.2 NP_253641 (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_172 104351 105394 - motB 100.0 99.3 NP_253640 (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 35714 36454 + motC 100.0 99.2 NP_250151 (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_78 36467 37357 + motD 100.0 98.7 NP_250152 (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_142 15052 16017 + motY 100.0 99.3 NP_252216 (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1]
k141_175 4582 5166 + mucA 100.0 99.1 NP_249454 (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_175 5175 6125 + mucB 100.0 99.0 NP_249455 (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_175 6122 6577 + mucC 100.0 99.6 NP_249456 (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1]
k141_175 6617 8041 + mucD 100.0 98.9 NP_249457 (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_105 10260 10529 + mucE 100.0 98.5 NP_252722 (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_132 126104 127456 - mucP 100.0 99.3 NP_252339 (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1]
k141_254 7915 9345 + pchA 100.0 99.0 NP_252921 (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 7613 7918 + pchB 100.0 99.7 NP_252920 (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 6858 7613 + pchC 100.0 99.3 NP_252919 (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 5218 6861 + pchD 100.0 99.2 NP_252918 (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 4 3904 - pchE 90.4 98.7 NP_252916 (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_144 2013 7442 - pchF 100.0 98.8 NP_252915 (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_144 967 2016 - pchG 100.0 98.9 NP_252914 (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_89 6889 8613 - pchI 100.0 99.0 NP_252912 (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_254 4098 4988 - pchR 100.0 99.0 NP_252917 (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1]
k141_269 17397 17675 + pcr1 100.0 99.6 NP_250390 (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 17662 18033 + pcr2 100.0 98.9 NP_250391 (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 18030 18395 + pcr3 100.0 98.4 NP_250392 (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 18400 18729 + pcr4 100.0 99.1 NP_250393 (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 18726 20846 + pcrD 100.0 99.0 NP_250394 (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 21305 21601 + pcrG 100.0 99.7 NP_250396 (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 22504 23010 + pcrH 100.0 99.2 NP_250398 (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 20843 21277 + pcrR 100.0 99.3 NP_250395 (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 21611 22495 + pcrV 100.0 99.0 NP_250397 (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_227 184 672 + phzB1 100.0 98.6 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_228 244 678 + phzB1 89.0 89.7 NP_252900 (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 4045 5262 - phzC1 100.0 99.3 NP_252901 (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 3425 4048 - phzD1 100.0 99.2 NP_252902 (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 1545 3428 - phzE1 100.0 99.0 NP_252903 (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 695 1531 - phzF1 100.0 99.3 NP_252904 (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_51 25 669 - phzG1 100.0 99.7 NP_252906 (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_42 20349 22181 - phzH 100.0 99.1 NP_248741 (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1]
k141_86 11332 12336 - phzM 100.0 99.1 NP_252898 (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_89 297 1505 + phzS 100.0 98.4 NP_252907 (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1]
k141_6 37133 38832 + pilB 99.9 88.4 NP_253216 (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 18236 18661 - pilE 100.0 99.5 NP_253246 (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_176 104590 105348 - pilF 100.0 98.8 NP_252494 (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 42773 43180 - pilG 100.0 100.0 NP_249099 (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 42361 42726 - pilH 100.0 99.7 NP_249100 (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 41774 42310 - pilI 100.0 99.8 NP_249101 (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 39641 41689 - pilJ 100.0 99.7 NP_249102 (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_68 38705 39580 - pilK 100.0 99.3 NP_249103 (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 13857 14921 + pilM 100.0 99.5 NP_253731 (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 14921 15517 + pilN 100.0 99.2 NP_253730 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 15514 16137 + pilO 100.0 98.4 NP_253729 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 16134 16658 + pilP 100.0 99.4 NP_253728 (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_275 16712 18856 + pilQ 100.0 97.2 NP_253727 (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 26859 28196 - pilR 100.0 99.5 NP_253237 (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 28211 29803 - pilS 100.0 99.2 NP_253236 (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_291 7825 8859 + pilT 100.0 99.4 NP_249086 (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_291 9037 10185 + pilU 100.0 99.8 NP_249087 (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 23915 24472 - pilV 100.0 99.3 NP_253241 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 23094 23918 - pilW 100.0 98.9 NP_253242 (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 22510 23097 - pilX 100.0 99.3 NP_253243 (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 19007 22498 - pilY1 99.6 91.6 NP_253244 (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_188 18658 19005 - pilY2 100.0 99.1 NP_253245 (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_179 45365 47557 - plcH 100.0 99.6 NP_249535 (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1]
k141_269 22991 24163 + popB 100.0 99.5 NP_250399 (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 24175 25062 + popD 100.0 97.3 NP_250400 (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 16550 17416 + popN 100.0 99.4 NP_250389 (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_193 953 1681 - pppA 100.0 99.6 NP_248765 (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_269 28397 28819 + pscB 100.0 99.3 NP_250406 (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 28819 30621 + pscC 100.0 99.3 NP_250407 (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 30623 31921 + pscD 100.0 99.1 NP_250408 (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 31884 32087 + pscE 100.0 98.0 NP_250409 (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 32090 32347 + pscF 100.0 99.6 NP_250410 (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 32350 32697 + pscG 100.0 99.1 NP_250411 (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 32694 33125 + pscH 100.0 99.3 NP_250412 (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 33125 33463 + pscI 100.0 99.7 NP_250413 (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 33460 34206 + pscJ 100.0 99.5 NP_250414 (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 34215 34835 + pscK 99.0 97.8 NP_250415 (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 34814 35458 + pscL 100.0 98.8 NP_250416 (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 15037 16359 - pscN 100.0 99.5 NP_250388 (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 14564 15040 - pscO 100.0 99.4 NP_250387 (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 13494 14576 - pscP 96.8 94.8 NP_250386 (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 12568 13497 - pscQ 100.0 99.1 NP_250385 (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 11918 12571 - pscR 100.0 99.4 NP_250384 (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 11649 11915 - pscS 100.0 100.0 NP_250383 (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 10864 11652 - pscT 100.0 99.1 NP_250382 (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_269 9818 10867 - pscU 100.0 98.9 NP_250381 (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1]
k141_197 2393 3331 - ptxR 100.0 98.7 NP_250948 (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_171 7727 8713 - pvcA 100.0 99.4 NP_250944 (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_171 6834 7709 - pvcB 100.0 99.0 NP_250945 (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_197 147 1649 + pvcC 100.0 98.9 NP_250946 (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_197 1642 2288 + pvcD 99.8 97.8 NP_250947 (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 5381 6701 - pvdA 99.2 82.7 NP_251076 (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_222 18661 19488 - pvdF 100.0 82.2 NP_251086 (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_287 22173 22937 - pvdG 100.0 98.6 NP_251115 (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_66 127539 128948 + pvdH 100.0 99.2 NP_251103 (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_287 9071 22099 - pvdL 100.0 99.1 NP_251114 (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 15058 16404 + pvdM 99.8 95.6 NP_251083 (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 16427 17710 + pvdN 100.0 99.2 NP_251084 (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 17739 18593 + pvdO 100.0 98.1 NP_251085 (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 13198 14844 - pvdP 99.8 85.0 NP_251082 (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_222 2970 5258 - pvdQ 100.0 99.3 NP_251075 (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1]
k141_287 23580 24143 + pvdS 100.0 97.7 NP_251116 (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]
k141_210 7314 8201 + rhlA 100.0 99.7 NP_252169 (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_210 8267 9547 + rhlB 100.0 99.8 NP_252168 (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1]
k141_273 584 1561 - rhlC 100.0 98.9 NP_249821 (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1]
k141_248 23432 24037 - rhlI 100.0 98.7 NP_252166 (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1]
k141_193 1691 2371 - tagF/pppB 100.0 98.8 NP_248766 (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_42 5885 6799 + tagQ 100.0 98.0 NP_248760 (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_42 4111 5823 + tagR 100.0 99.4 NP_248761 (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_42 2919 4118 + tagS 100.0 99.3 NP_248762 (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_42 2200 2919 + tagT 100.0 98.3 NP_248763 (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_29 4973 6889 + toxA 100.0 98.8 NP_249839 (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1]
k141_85 66979 67443 + tse1 100.0 99.8 NP_250535 (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_48 16019 16495 - tse2 100.0 98.7 NP_251392 (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_210 815 2041 - tse3 100.0 99.2 NP_252174 (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_193 21790 23721 + vgrG1a 100.0 99.2 NP_248781 (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]
k141_193 26442 28667 + vgrG1b 100.0 98.7 NP_248785 (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1]
k141_149 14078 15355 - waaA 100.0 99.2 NP_253675 (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_149 40043 41110 - waaC 100.0 99.2 NP_253698 (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_149 41107 42144 - waaF 100.0 99.5 NP_253699 (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_149 38925 40046 - waaG 100.0 99.2 NP_253697 (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_149 38122 38928 - waaP 100.0 99.3 NP_253696 (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1]
k141_6 40060 40932 + xcpA/pilD 100.0 99.3 NP_253218 (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]
k141_239 7929 8636 + xcpP 100.0 99.7 NP_251794 (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 8641 10617 + xcpQ 100.0 99.0 NP_251795 (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 6201 7709 - xcpR 100.0 99.5 NP_251793 (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 4984 6201 - xcpS 100.0 99.3 NP_251792 (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 4533 4979 - xcpT 100.0 99.3 NP_251791 (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 4008 4526 - xcpU 100.0 98.5 NP_251790 (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 3622 4011 - xcpV 100.0 99.2 NP_251789 (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 2921 3625 - xcpW 98.7 98.3 NP_251788 (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 1923 2924 - xcpX 100.0 99.1 NP_251787 (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 778 1926 - xcpY 100.0 98.3 NP_251786 (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]
k141_239 252 776 - xcpZ 100.0 99.2 NP_251785 (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1]


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Multi-Locus Sequence Typing (MLST)


Symbol Meaning
~ novel full length allele similar to match
? partial match to known allele
- allele missing


Scheme ST 1 2 3 4 5 6 7
120_pio paeruginosa 235 acsA(38) aroE(11) guaA(3) mutL(13) nuoD(1) ppsA(2) trpE(4)
123_pio paeruginosa 235 acsA(38) aroE(11) guaA(3) mutL(13) nuoD(1) ppsA(2) trpE(4)
129_pio paeruginosa 235 acsA(38) aroE(11) guaA(3) mutL(13) nuoD(1) ppsA(2) trpE(4)
15_pio paeruginosa 235 acsA(38) aroE(11) guaA(3) mutL(13) nuoD(1) ppsA(2) trpE(4)
159_pio paeruginosa 235 acsA(38) aroE(11) guaA(3) mutL(13) nuoD(1) ppsA(2) trpE(4)
165_pio paeruginosa 235 acsA(38) aroE(11) guaA(3) mutL(13) nuoD(1) ppsA(2) trpE(4)
166_pio paeruginosa 235 acsA(38) aroE(11) guaA(3) mutL(13) nuoD(1) ppsA(2) trpE(4)
168_pio paeruginosa 235 acsA(38) aroE(11) guaA(3) mutL(13) nuoD(1) ppsA(2) trpE(4)

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Pangenome Analysis

Pangenome genes summary

Genes Description Number
Core genes (99% <= strains <= 100%) 5891
Soft core genes (95% <= strains < 99%) 0
Shell genes (15% <= strains < 95%) 370
Cloud genes (0% <= strains < 15%) 507
Total genes (0% <= strains <= 100%) 6768

Schematic representation of genes presence (color) or absence (blank) between samples:


Pangenome tree based on presence/absence of accessory genes representation

Rectangular (phylogram)

Circular (phylogram)

Circular (cladogram)


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WARNING: Core genome alignment tree was not generated during pangenome analysis. Please check.


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Insertion sequence characterization


Field Description
Region Numeric code given to insertion sequence (IS)
Orientation The orientation of IS position: Either forward (F) or reverse (F)
X-cordinates The left coordinate of the position
Y-coordinates The right coordinate of the position
Gap The distance between the x and y coordinates
CallType Describes whether a position hit is novel (not in reference) or known (in the reference)
LeftGene Locus tag ID of the gene closest to the left side of the IS position
LeftGeneDescription Description of the gene feature from the left side of the IS position. By default this is the product position
RightGene Locus tag ID of the gene closest to the right side of the IS position
RightGeneDescription Description of the gene feature from the right side of the IS position. By default this is the product position


Select the sample

pseudomonas.gbk
## Error in read.table("pseudomonas.gbk_inseq.txt", header = T, sep = "\t", : no lines available in input
## Error in as.data.frame(iseq): objeto 'iseq' no encontrado
## Error in cbind(iseq[, 1:10]): objeto 'iseq' no encontrado
## Error in colnames(iseqdata) = c("Region", "Orientation", "X-coordinates", : objeto 'iseqdata' no encontrado
## Error in eval(expr, envir, enclos): objeto 'iseqdata' no encontrado
## Error in formattable(iseq, align = c("l", "c", "c", "c", "c", "c", "c", : objeto 'iseq' no encontrado


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Citations and Bibliography

If you have used rMAP, please cite:

Sserwadda, I., & Mboowa, G. (2021). rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data. Microbial genomics, 7(6), 10.1099/mgen.0.000583. https://doi.org/10.1099/mgen.0.000583


The philosophy of rMAP was built on the foundation of already pre-existing tools. As a token of gratitude to the authors of those numerous tools, please also cite:


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