rMAP Comprehensive Analysis Report Summary
2023-03-21
This run was generated using rMAP version 1.0 performed on 2023-03-21… Thank you for using this pipeline!!
Assembly summary statistics
| Field | Description |
|---|---|
| SampleID | Name of the sample |
| MeanReadLen | Average read length after quality filtering |
| Contigs | Number of contigs of the draft genome (>200bp) |
| GenomeLength | Length (bp) of the draft genome |
| LargestContig | Length (bp) of the largest contig in the genome |
| N50 | Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly |
| GC-Content | GC content (%) of the draft genome |
## Warning: package 'readxl' was built under R version 4.1.3| SampleID | MeanReadLen | Contigs | GenomeLength | LargestContig | N50 | GC-Content |
|---|---|---|---|---|---|---|
| 15_pio | 35198.82 | 196 | 6898969 | 243383 | 109745 | 66.13 |
| 120_pio | 24884.34 | 275 | 6843193 | 213923 | 58397 | 66.07 |
| 123_pio | 24348.56 | 280 | 6817596 | 248561 | 55421 | 66.08 |
| 129_pio | 25073.63 | 272 | 6820027 | 184413 | 68268 | 66.07 |
| 159_pio | 21514.52 | 317 | 6820103 | 198706 | 49104 | 66.09 |
| 165_pio | 23058.96 | 296 | 6825451 | 217990 | 64492 | 66.08 |
| 166_pio | 23709.31 | 287 | 6804572 | 196873 | 58275 | 66.10 |
| 168_pio | 24145.57 | 282 | 6809052 | 172016 | 57016 | 66.08 |
Select the parameter
Average read length
Average read length per sample = NA bp
Number of contigs
Average number of contigs per sample = 275.625
Genome length
Average genome length per sample = 6.8298704^{6} bp
Largest contig length
Average largest contig length per sample = 2.0948312^{5} bp
N50
Average N50 per sample = 6.508975^{4} bp
GC content
Average GC content per sample = NA%
Antimicrobial Resistance Profiling
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Gaps | Gaps in subject (genome) and query (antibiotic resistance gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
| Resistance | Antibiotic that the gene confers resistance to |
Select the samples and the database
15_pio
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_1 | 48292 | 49137 | aadA6_1 | 0/0 | 100 | 100.0 | AF140629 | aadA6 | Streptomycin |
| k141_44 | 102060 | 102866 | aph(3’)-IIb_1 | 0/0 | 100 | 98.8 | X90856 | aph(3’)-IIb | |
| k141_148 | 33844 | 34632 | blaOXA-488_1 | 0/0 | 100 | 99.9 | CP017969 | blaOXA-488 | |
| k141_44 | 88511 | 89704 | blaPAO_2 | 0/0 | 100 | 99.2 | FJ666065 | blaPAO | |
| k141_197 | 93798 | 94436 | catB7_1 | 0/0 | 100 | 98.8 | AF036933 | catB7 | Chloramphenicol |
| k141_175 | 25374 | 25781 | fosA_4 | 0/0 | 100 | 99.0 | ACWU01000146 | fosA | Fosfomycin |
| k141_1 | 46675 | 47541 | sul1_5 | 0/0 | 100 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_1 | 48292 | 49137 | aadA6 | 0/0 | 100.0 | 100.0 | AM087411:1611-2457 | aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa | aminoglycoside |
| k141_44 | 102060 | 102866 | APH(3’)-IIb | 0/0 | 100.0 | 98.8 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| k141_163 | 50946 | 51107 | ArmR | 0/0 | 100.0 | 96.9 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_151 | 100201 | 102189 | arnA | 0/0 | 100.0 | 99.5 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| k141_113 | 88356 | 89789 | basS | 0/0 | 100.0 | 98.7 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| k141_44 | 119571 | 120779 | bcr-1 | 0/0 | 100.0 | 99.4 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| k141_175 | 25374 | 25781 | fosA | 0/0 | 100.0 | 99.5 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| k141_74 | 88185 | 91325 | MexB | 0/0 | 100.0 | 99.3 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_72 | 151295 | 152458 | MexC | 0/0 | 100.0 | 99.4 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_72 | 148136 | 151267 | MexD | 2/2 | 100.0 | 99.3 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_153 | 28340 | 29584 | MexE | 0/0 | 100.0 | 99.4 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_153 | 29606 | 32794 | MexF | 0/0 | 100.0 | 99.7 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_78 | 7748 | 8194 | mexG | 0/0 | 100.0 | 99.8 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| k141_78 | 6628 | 7740 | mexH | 0/0 | 100.0 | 99.5 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_78 | 3526 | 6615 | mexI | 0/0 | 100.0 | 99.6 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_163 | 4496 | 5599 | mexJ | 0/0 | 100.0 | 99.0 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_163 | 1414 | 4491 | mexK | 0/0 | 100.0 | 99.5 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_163 | 5695 | 6333 | mexL | 0/0 | 100.0 | 99.8 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| k141_111 | 60602 | 61759 | mexM | 0/0 | 100.0 | 99.4 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_111 | 57495 | 60605 | mexN | 0/0 | 100.0 | 99.2 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_151 | 140409 | 141566 | mexP | 0/0 | 100.0 | 98.8 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_151 | 141563 | 144724 | mexQ | 0/0 | 100.0 | 99.2 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_109 | 103349 | 104479 | mexV | 0/0 | 100.0 | 98.7 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_109 | 104530 | 107586 | mexW | 0/0 | 100.0 | 99.5 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_140 | 56016 | 57195 | mexX | 7/10 | 100.0 | 98.0 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_140 | 57211 | 60348 | mexY | 8/9 | 99.8 | 98.6 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_153 | 73613 | 74893 | MuxA | 0/0 | 100.0 | 99.3 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_153 | 70485 | 73616 | MuxB | 0/0 | 100.0 | 99.5 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_153 | 67378 | 70488 | MuxC | 0/0 | 100.0 | 99.1 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_153 | 65885 | 67381 | OpmB | 0/0 | 100.0 | 99.3 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_78 | 2066 | 3529 | opmD | 0/0 | 100.0 | 99.0 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_151 | 144721 | 146196 | opmE | 0/0 | 100.0 | 99.2 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_107 | 145 | 1593 | OpmH | 0/0 | 100.0 | 99.2 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| k141_72 | 146691 | 148130 | OprJ | 0/0 | 100.0 | 99.0 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_74 | 91327 | 92784 | OprM | 0/0 | 100.0 | 98.8 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_153 | 32791 | 34209 | OprN | 0/0 | 100.0 | 99.3 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_148 | 33844 | 34632 | OXA-488 | 0/0 | 100.0 | 100.0 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| k141_44 | 88511 | 89704 | PDC-2 | 0/0 | 100.0 | 99.6 | FJ666064:0-1194 | PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| k141_59 | 6091 | 7524 | PmpM | 0/0 | 100.0 | 99.6 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| k141_197 | 93798 | 94436 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100.0 | 98.8 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| k141_88 | 8283 | 8960 | Pseudomonas_aeruginosa_CpxR | 0/0 | 100.0 | 99.6 | LT673656.1:1885022-1884344 | CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_102 | 16362 | 16694 | Pseudomonas_aeruginosa_emrE | 0/0 | 100.0 | 98.8 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| k141_99 | 17494 | 17964 | Pseudomonas_aeruginosa_soxR | 0/0 | 100.0 | 99.4 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| k141_1 | 46675 | 47514 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| k141_105 | 48080 | 49231 | TriA | 0/0 | 100.0 | 99.1 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_105 | 47013 | 48083 | TriB | 0/0 | 100.0 | 99.3 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_105 | 43969 | 47016 | TriC | 0/0 | 100.0 | 99.3 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_1 | 48292 | 49137 | (AGly)aadA6 | 0/0 | 100 | 100.0 | AF140629:61-906 | (AGly)aadA6 | NA |
| k141_44 | 102060 | 102866 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98.8 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| k141_148 | 33844 | 34632 | (Bla)blaOXA-50 | 0/0 | 100 | 98.5 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| k141_44 | 88511 | 89704 | (Bla)blaPDC-195 | 0/0 | 100 | 99.2 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| k141_44 | 119571 | 120779 | (Phe)bcr1 | 0/0 | 100 | 99.4 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| k141_197 | 93798 | 94436 | (Phe)catB7 | 0/0 | 100 | 98.8 | AF036933:177-815 | (Phe)catB7 | NA |
| k141_1 | 46675 | 47514 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
NCBI
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_1 | 48292 | 49137 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_44 | 102060 | 102866 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_148 | 33844 | 34632 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_44 | 88511 | 89733 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_197 | 93798 | 94436 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_175 | 25374 | 25781 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_1 | 46675 | 47514 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
MEGARES
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_1 | 48292 | 49137 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_44 | 102060 | 102866 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_148 | 33844 | 34632 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_44 | 88511 | 89733 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_197 | 93798 | 94436 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_175 | 25374 | 25781 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_1 | 46675 | 47514 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
120_pio
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_277 | 1976 | 2764 | aadA5_1 | 0/0 | 100 | 99.6 | AF137361 | aadA5 | Streptomycin |
| k141_62 | 1402 | 2247 | aadA6_1 | 0/0 | 100 | 100.0 | AF140629 | aadA6 | Streptomycin |
| k141_277 | 1385 | 1918 | ant(2’’)-Ia_13 | 0/0 | 100 | 99.8 | DQ176450 | ant(2’’)-Ia | Gentamicin, Tobramycin |
| k141_239 | 35612 | 36418 | aph(3’)-IIb_1 | 0/0 | 100 | 98.8 | X90856 | aph(3’)-IIb | |
| k141_177 | 4766 | 5545 | aph(3’)-VIa_1 | 0/0 | 100 | 98.5 | X07753 | aph(3’)-VIa | Amikacin |
| k141_277 | 3202 | 4029 | blaOXA-2_1 | 0/0 | 100 | 100.0 | DQ112222 | blaOXA-2 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin |
| k141_256 | 112417 | 113205 | blaOXA-488_1 | 0/0 | 100 | 99.9 | CP017969 | blaOXA-488 | |
| k141_239 | 48863 | 50056 | blaPAO_2 | 0/0 | 100 | 99.2 | FJ666065 | blaPAO | |
| k141_277 | 447 | 1307 | blaTEM-1B_1 | 0/0 | 100 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| k141_200 | 19447 | 20085 | catB7_1 | 0/0 | 100 | 98.8 | AF036933 | catB7 | Chloramphenicol |
| k141_22 | 8616 | 8813 | crpP_1 | 0/0 | 100 | 98.0 | HM560971 | crpP | Ciprofloxacin |
| k141_240 | 180 | 587 | fosA_4 | 0/0 | 100 | 99.0 | ACWU01000146 | fosA | Fosfomycin |
| k141_130 | 745 | 1611 | sul1_5 | 0/0 | 100 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_277 | 1976 | 2764 | aadA5 | 0/0 | 100.0 | 99.6 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| k141_62 | 1402 | 2247 | aadA6 | 0/0 | 100.0 | 100.0 | AM087411:1611-2457 | aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa | aminoglycoside |
| k141_277 | 1385 | 1918 | ANT(2’’)-Ia | 0/0 | 100.0 | 99.2 | AF078527:3769-4303 | Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii | aminoglycoside |
| k141_239 | 35612 | 36418 | APH(3’)-IIb | 0/0 | 100.0 | 98.8 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| k141_177 | 4766 | 5545 | APH(3’)-VIa | 0/0 | 100.0 | 98.5 | X07753:102-882 | APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii | aminoglycoside |
| k141_231 | 38922 | 39083 | ArmR | 0/0 | 100.0 | 96.9 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_178 | 20114 | 22102 | arnA | 0/0 | 100.0 | 99.5 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| k141_36 | 67704 | 69137 | basS | 0/0 | 100.0 | 98.7 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| k141_239 | 17699 | 18907 | bcr-1 | 0/0 | 100.0 | 99.4 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| k141_22 | 8616 | 8813 | CrpP | 0/0 | 100.0 | 98.0 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| k141_240 | 180 | 587 | fosA | 0/0 | 100.0 | 99.5 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| k141_175 | 43293 | 44444 | MexA | 0/0 | 100.0 | 99.3 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_175 | 44460 | 47600 | MexB | 0/0 | 100.0 | 99.3 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_196 | 8181 | 9344 | MexC | 0/0 | 100.0 | 99.4 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_196 | 9372 | 12503 | MexD | 2/2 | 100.0 | 99.3 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_237 | 184340 | 185584 | MexE | 0/0 | 100.0 | 99.4 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_237 | 181130 | 184318 | MexF | 0/0 | 100.0 | 99.7 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_42 | 7748 | 8194 | mexG | 0/0 | 100.0 | 99.8 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| k141_42 | 6628 | 7740 | mexH | 0/0 | 100.0 | 99.5 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_42 | 3526 | 6615 | mexI | 0/0 | 100.0 | 99.6 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_178 | 157726 | 158829 | mexJ | 0/0 | 100.0 | 99.0 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_178 | 154644 | 157721 | mexK | 0/0 | 100.0 | 99.5 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_178 | 158925 | 159563 | mexL | 0/0 | 100.0 | 99.8 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| k141_209 | 8006 | 9163 | mexM | 0/0 | 100.0 | 99.4 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_209 | 9160 | 12270 | mexN | 0/0 | 100.0 | 99.2 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_185 | 25965 | 27122 | mexP | 0/0 | 100.0 | 98.8 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_185 | 22807 | 25968 | mexQ | 0/0 | 100.0 | 99.2 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_75 | 64332 | 65462 | mexV | 0/0 | 100.0 | 98.7 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_75 | 65513 | 68569 | mexW | 0/0 | 100.0 | 99.5 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_52 | 338 | 1516 | mexX | 8/11 | 99.9 | 98.0 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_227 | 1 | 2957 | mexY | 8/9 | 94.0 | 98.4 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_237 | 139031 | 140311 | MuxA | 0/0 | 100.0 | 99.3 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_237 | 140308 | 143439 | MuxB | 0/0 | 100.0 | 99.5 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_237 | 143436 | 146546 | MuxC | 0/0 | 100.0 | 99.1 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_237 | 146543 | 148039 | OpmB | 0/0 | 100.0 | 99.3 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_42 | 2066 | 3529 | opmD | 0/0 | 100.0 | 99.0 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_185 | 21335 | 22810 | opmE | 0/0 | 100.0 | 99.2 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_208 | 46259 | 47707 | OpmH | 0/0 | 100.0 | 99.2 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| k141_196 | 12509 | 13948 | OprJ | 0/0 | 100.0 | 99.0 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_175 | 47602 | 49059 | OprM | 0/0 | 100.0 | 98.8 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_237 | 179715 | 181133 | OprN | 0/0 | 100.0 | 99.3 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_277 | 3202 | 4029 | OXA-2 | 0/0 | 100.0 | 100.0 | M95287.4:2455-3283 | OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. | carbapenem, cephalosporin, penam |
| k141_256 | 112417 | 113205 | OXA-488 | 0/0 | 100.0 | 100.0 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| k141_239 | 48863 | 50056 | PDC-2 | 0/0 | 100.0 | 99.6 | FJ666064:0-1194 | PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| k141_157 | 6093 | 7526 | PmpM | 0/0 | 100.0 | 99.6 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| k141_200 | 19447 | 20085 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100.0 | 98.8 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| k141_121 | 32474 | 32806 | Pseudomonas_aeruginosa_emrE | 0/0 | 100.0 | 98.8 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| k141_49 | 14803 | 15273 | Pseudomonas_aeruginosa_soxR | 0/0 | 100.0 | 99.4 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| k141_130 | 772 | 1611 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| k141_277 | 447 | 1307 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| k141_65 | 19383 | 20534 | TriA | 0/0 | 100.0 | 99.0 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_65 | 20531 | 21601 | TriB | 0/0 | 100.0 | 99.3 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_65 | 21598 | 24645 | TriC | 0/0 | 100.0 | 99.3 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_277 | 1976 | 2764 | (AGly)aadA5 | 0/0 | 100 | 99.6 | AF137361:64-852 | (AGly)aadA5 | NA |
| k141_62 | 1402 | 2247 | (AGly)aadA6 | 0/0 | 100 | 100.0 | AF140629:61-906 | (AGly)aadA6 | NA |
| k141_277 | 1385 | 1918 | (AGly)aadB | 0/0 | 100 | 99.2 | JQ690540:4275-4808 | (AGly)aadB | NA |
| k141_239 | 35612 | 36418 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98.8 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| k141_177 | 4766 | 5545 | (AGly)aphA6 | 0/0 | 100 | 98.3 | JF949760:695-1474 | (AGly)aphA6 | NA |
| k141_277 | 3202 | 4029 | (Bla)blaOXA-2 | 0/0 | 100 | 100.0 | HM131431:1-828 | (Bla)blaOXA-2 | NA |
| k141_256 | 112417 | 113205 | (Bla)blaOXA-50 | 0/0 | 100 | 98.5 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| k141_239 | 48863 | 50056 | (Bla)blaPDC-195 | 0/0 | 100 | 99.2 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| k141_277 | 447 | 1307 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| k141_22 | 8616 | 8813 | (Flq)crpP | 0/0 | 100 | 98.0 | NG_062203:101-298 | (Flq)crpP | NA |
| k141_239 | 17699 | 18907 | (Phe)bcr1 | 0/0 | 100 | 99.4 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| k141_200 | 19447 | 20085 | (Phe)catB7 | 0/0 | 100 | 98.8 | AF036933:177-815 | (Phe)catB7 | NA |
| k141_130 | 772 | 1611 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
NCBI
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_277 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_62 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_277 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_239 | 35612 | 36418 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_177 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_277 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_256 | 112417 | 113205 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_239 | 48834 | 50056 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_277 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_200 | 19447 | 20085 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_22 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_240 | 180 | 587 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_130 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
MEGARES
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_277 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_62 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_277 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_239 | 35612 | 36418 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_177 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_277 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_256 | 112417 | 113205 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_239 | 48834 | 50056 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_277 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_200 | 19447 | 20085 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_22 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_240 | 180 | 587 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_130 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
123_pio
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_262 | 1976 | 2764 | aadA5_1 | 0/0 | 100 | 99.6 | AF137361 | aadA5 | Streptomycin |
| k141_136 | 1402 | 2247 | aadA6_1 | 0/0 | 100 | 100.0 | AF140629 | aadA6 | Streptomycin |
| k141_262 | 1385 | 1918 | ant(2’’)-Ia_13 | 0/0 | 100 | 99.8 | DQ176450 | ant(2’’)-Ia | Gentamicin, Tobramycin |
| k141_40 | 102095 | 102901 | aph(3’)-IIb_1 | 0/0 | 100 | 98.8 | X90856 | aph(3’)-IIb | |
| k141_80 | 4766 | 5545 | aph(3’)-VIa_1 | 0/0 | 100 | 98.5 | X07753 | aph(3’)-VIa | Amikacin |
| k141_262 | 2883 | 3710 | blaOXA-2_1 | 0/0 | 100 | 100.0 | DQ112222 | blaOXA-2 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin |
| k141_51 | 55607 | 56395 | blaOXA-488_1 | 0/0 | 100 | 99.9 | CP017969 | blaOXA-488 | |
| k141_40 | 88546 | 89739 | blaPAO_2 | 0/0 | 100 | 99.2 | FJ666065 | blaPAO | |
| k141_262 | 447 | 1307 | blaTEM-1B_1 | 0/0 | 100 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| k141_218 | 19454 | 20092 | catB7_1 | 0/0 | 100 | 98.8 | AF036933 | catB7 | Chloramphenicol |
| k141_23 | 8616 | 8813 | crpP_1 | 0/0 | 100 | 98.0 | HM560971 | crpP | Ciprofloxacin |
| k141_289 | 180 | 587 | fosA_4 | 0/0 | 100 | 99.0 | ACWU01000146 | fosA | Fosfomycin |
| k141_150 | 745 | 1611 | sul1_5 | 0/0 | 100 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_262 | 1976 | 2764 | aadA5 | 0/0 | 100.0 | 99.6 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| k141_136 | 1402 | 2247 | aadA6 | 0/0 | 100.0 | 100.0 | AM087411:1611-2457 | aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa | aminoglycoside |
| k141_262 | 1385 | 1918 | ANT(2’’)-Ia | 0/0 | 100.0 | 99.2 | AF078527:3769-4303 | Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii | aminoglycoside |
| k141_40 | 102095 | 102901 | APH(3’)-IIb | 0/0 | 100.0 | 98.8 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| k141_80 | 4766 | 5545 | APH(3’)-VIa | 0/0 | 100.0 | 98.5 | X07753:102-882 | APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii | aminoglycoside |
| k141_18 | 38959 | 39120 | ArmR | 0/0 | 100.0 | 96.9 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_266 | 63653 | 65641 | arnA | 0/0 | 100.0 | 99.5 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| k141_176 | 82119 | 83552 | basS | 0/0 | 100.0 | 98.7 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| k141_40 | 119606 | 120814 | bcr-1 | 0/0 | 100.0 | 99.4 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| k141_23 | 8616 | 8813 | CrpP | 0/0 | 100.0 | 98.0 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| k141_289 | 180 | 587 | fosA | 0/0 | 100.0 | 99.5 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| k141_66 | 9702 | 10853 | MexA | 0/0 | 100.0 | 99.3 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_66 | 6546 | 9686 | MexB | 0/0 | 100.0 | 99.3 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_265 | 6270 | 7433 | MexC | 0/0 | 100.0 | 99.4 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_265 | 7461 | 10592 | MexD | 2/2 | 100.0 | 99.3 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_123 | 28340 | 29584 | MexE | 0/0 | 100.0 | 99.4 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_123 | 29606 | 32794 | MexF | 0/0 | 100.0 | 99.7 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_33 | 57208 | 57654 | mexG | 0/0 | 100.0 | 99.8 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| k141_33 | 57662 | 58774 | mexH | 0/0 | 100.0 | 99.5 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_33 | 58787 | 61876 | mexI | 0/0 | 100.0 | 99.6 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_215 | 6609 | 7712 | mexJ | 0/0 | 100.0 | 99.0 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_215 | 7717 | 10794 | mexK | 0/0 | 100.0 | 99.5 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_215 | 5875 | 6513 | mexL | 0/0 | 100.0 | 99.8 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| k141_139 | 39134 | 40291 | mexM | 0/0 | 100.0 | 99.4 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_139 | 36027 | 39137 | mexN | 0/0 | 100.0 | 99.2 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_266 | 24276 | 25433 | mexP | 0/0 | 100.0 | 98.8 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_266 | 21118 | 24279 | mexQ | 0/0 | 100.0 | 99.2 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_87 | 57680 | 58810 | mexV | 0/0 | 100.0 | 98.7 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_87 | 54573 | 57629 | mexW | 0/0 | 100.0 | 99.5 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_258 | 9842 | 11020 | mexX | 8/11 | 99.9 | 98.0 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_258 | 6689 | 9826 | mexY | 8/9 | 99.8 | 98.6 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_123 | 73613 | 74893 | MuxA | 0/0 | 100.0 | 99.3 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_123 | 70485 | 73616 | MuxB | 0/0 | 100.0 | 99.5 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_123 | 67378 | 70488 | MuxC | 0/0 | 100.0 | 99.1 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_123 | 65885 | 67381 | OpmB | 0/0 | 100.0 | 99.3 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_33 | 61873 | 63336 | opmD | 0/0 | 100.0 | 99.0 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_266 | 19646 | 21121 | opmE | 0/0 | 100.0 | 99.2 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_85 | 46293 | 47741 | OpmH | 0/0 | 100.0 | 99.2 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| k141_265 | 10598 | 12037 | OprJ | 0/0 | 100.0 | 99.0 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_66 | 5087 | 6544 | OprM | 0/0 | 100.0 | 98.8 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_123 | 32791 | 34209 | OprN | 0/0 | 100.0 | 99.3 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_262 | 2883 | 3710 | OXA-2 | 0/0 | 100.0 | 100.0 | M95287.4:2455-3283 | OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. | carbapenem, cephalosporin, penam |
| k141_51 | 55607 | 56395 | OXA-488 | 0/0 | 100.0 | 100.0 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| k141_40 | 88546 | 89739 | PDC-2 | 0/0 | 100.0 | 99.6 | FJ666064:0-1194 | PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| k141_179 | 6093 | 7526 | PmpM | 0/0 | 100.0 | 99.6 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| k141_218 | 19454 | 20092 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100.0 | 98.8 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| k141_62 | 16333 | 16665 | Pseudomonas_aeruginosa_emrE | 0/0 | 100.0 | 98.8 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| k141_261 | 10399 | 10869 | Pseudomonas_aeruginosa_soxR | 0/0 | 100.0 | 99.4 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| k141_150 | 772 | 1611 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| k141_262 | 447 | 1307 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| k141_63 | 21350 | 22501 | TriA | 0/0 | 100.0 | 99.0 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_63 | 20283 | 21353 | TriB | 0/0 | 100.0 | 99.3 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_63 | 17239 | 20286 | TriC | 0/0 | 100.0 | 99.3 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_262 | 1976 | 2764 | (AGly)aadA5 | 0/0 | 100 | 99.6 | AF137361:64-852 | (AGly)aadA5 | NA |
| k141_136 | 1402 | 2247 | (AGly)aadA6 | 0/0 | 100 | 100.0 | AF140629:61-906 | (AGly)aadA6 | NA |
| k141_262 | 1385 | 1918 | (AGly)aadB | 0/0 | 100 | 99.2 | JQ690540:4275-4808 | (AGly)aadB | NA |
| k141_40 | 102095 | 102901 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98.8 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| k141_80 | 4766 | 5545 | (AGly)aphA6 | 0/0 | 100 | 98.3 | JF949760:695-1474 | (AGly)aphA6 | NA |
| k141_262 | 2883 | 3710 | (Bla)blaOXA-2 | 0/0 | 100 | 100.0 | HM131431:1-828 | (Bla)blaOXA-2 | NA |
| k141_51 | 55607 | 56395 | (Bla)blaOXA-50 | 0/0 | 100 | 98.5 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| k141_40 | 88546 | 89739 | (Bla)blaPDC-195 | 0/0 | 100 | 99.2 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| k141_262 | 447 | 1307 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| k141_23 | 8616 | 8813 | (Flq)crpP | 0/0 | 100 | 98.0 | NG_062203:101-298 | (Flq)crpP | NA |
| k141_40 | 119606 | 120814 | (Phe)bcr1 | 0/0 | 100 | 99.4 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| k141_218 | 19454 | 20092 | (Phe)catB7 | 0/0 | 100 | 98.8 | AF036933:177-815 | (Phe)catB7 | NA |
| k141_150 | 772 | 1611 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
NCBI
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_262 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_136 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_262 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_40 | 102095 | 102901 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_80 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_262 | 2883 | 3710 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_51 | 55607 | 56395 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_40 | 88546 | 89768 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_262 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_218 | 19454 | 20092 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_23 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_289 | 180 | 587 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_150 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
MEGARES
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_262 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_136 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_262 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_40 | 102095 | 102901 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_80 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_262 | 2883 | 3710 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_51 | 55607 | 56395 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_40 | 88546 | 89768 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_262 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_218 | 19454 | 20092 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_23 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_289 | 180 | 587 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_150 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
129_pio
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_251 | 1976 | 2764 | aadA5_1 | 0/0 | 100 | 99.6 | AF137361 | aadA5 | Streptomycin |
| k141_63 | 1402 | 2247 | aadA6_1 | 0/0 | 100 | 100.0 | AF140629 | aadA6 | Streptomycin |
| k141_251 | 1385 | 1918 | ant(2’’)-Ia_13 | 0/0 | 100 | 99.8 | DQ176450 | ant(2’’)-Ia | Gentamicin, Tobramycin |
| k141_146 | 102098 | 102904 | aph(3’)-IIb_1 | 0/0 | 100 | 98.8 | X90856 | aph(3’)-IIb | |
| k141_69 | 4766 | 5545 | aph(3’)-VIa_1 | 0/0 | 100 | 98.5 | X07753 | aph(3’)-VIa | Amikacin |
| k141_251 | 3202 | 4029 | blaOXA-2_1 | 0/0 | 100 | 100.0 | DQ112222 | blaOXA-2 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin |
| k141_97 | 83924 | 84712 | blaOXA-488_1 | 0/0 | 100 | 99.9 | CP017969 | blaOXA-488 | |
| k141_146 | 88549 | 89742 | blaPAO_2 | 0/0 | 100 | 99.2 | FJ666065 | blaPAO | |
| k141_251 | 447 | 1307 | blaTEM-1B_1 | 0/0 | 100 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| k141_47 | 19428 | 20066 | catB7_1 | 0/0 | 100 | 98.8 | AF036933 | catB7 | Chloramphenicol |
| k141_24 | 8616 | 8813 | crpP_1 | 0/0 | 100 | 98.0 | HM560971 | crpP | Ciprofloxacin |
| k141_227 | 180 | 587 | fosA_4 | 0/0 | 100 | 99.0 | ACWU01000146 | fosA | Fosfomycin |
| k141_125 | 745 | 1611 | sul1_5 | 0/0 | 100 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_251 | 1976 | 2764 | aadA5 | 0/0 | 100.0 | 99.6 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| k141_63 | 1402 | 2247 | aadA6 | 0/0 | 100.0 | 100.0 | AM087411:1611-2457 | aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa | aminoglycoside |
| k141_251 | 1385 | 1918 | ANT(2’’)-Ia | 0/0 | 100.0 | 99.2 | AF078527:3769-4303 | Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii | aminoglycoside |
| k141_146 | 102098 | 102904 | APH(3’)-IIb | 0/0 | 100.0 | 98.8 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| k141_69 | 4766 | 5545 | APH(3’)-VIa | 0/0 | 100.0 | 98.5 | X07753:102-882 | APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii | aminoglycoside |
| k141_164 | 130171 | 130332 | ArmR | 0/0 | 100.0 | 96.9 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_139 | 131044 | 133032 | arnA | 0/0 | 100.0 | 99.5 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| k141_135 | 94388 | 95821 | basS | 0/0 | 100.0 | 98.7 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| k141_146 | 119609 | 120817 | bcr-1 | 0/0 | 100.0 | 99.4 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| k141_24 | 8616 | 8813 | CrpP | 0/0 | 100.0 | 98.0 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| k141_227 | 180 | 587 | fosA | 0/0 | 100.0 | 99.5 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| k141_193 | 43278 | 44429 | MexA | 0/0 | 100.0 | 99.3 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_193 | 44445 | 47585 | MexB | 0/0 | 100.0 | 99.3 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_54 | 6270 | 7433 | MexC | 0/0 | 100.0 | 99.4 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_54 | 7461 | 10592 | MexD | 2/2 | 100.0 | 99.3 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_257 | 28340 | 29584 | MexE | 0/0 | 100.0 | 99.4 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_257 | 29606 | 32794 | MexF | 0/0 | 100.0 | 99.7 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_100 | 57022 | 57468 | mexG | 0/0 | 100.0 | 99.8 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| k141_100 | 57476 | 58588 | mexH | 0/0 | 100.0 | 99.5 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_100 | 58601 | 61690 | mexI | 0/0 | 100.0 | 99.6 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_103 | 6605 | 7708 | mexJ | 0/0 | 100.0 | 99.0 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_103 | 7713 | 10790 | mexK | 0/0 | 100.0 | 99.5 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_103 | 5871 | 6509 | mexL | 0/0 | 100.0 | 99.8 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| k141_96 | 44029 | 45186 | mexM | 0/0 | 100.0 | 99.4 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_96 | 40922 | 44032 | mexN | 0/0 | 100.0 | 99.2 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_235 | 24381 | 25538 | mexP | 0/0 | 100.0 | 98.8 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_235 | 21223 | 24384 | mexQ | 0/0 | 100.0 | 99.2 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_67 | 96672 | 97802 | mexV | 0/0 | 100.0 | 98.7 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_67 | 93565 | 96621 | mexW | 0/0 | 100.0 | 99.5 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_126 | 9842 | 11020 | mexX | 8/11 | 99.9 | 98.0 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_126 | 6689 | 9826 | mexY | 8/9 | 99.8 | 98.6 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_257 | 73613 | 74893 | MuxA | 0/0 | 100.0 | 99.3 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_257 | 70485 | 73616 | MuxB | 0/0 | 100.0 | 99.5 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_257 | 67378 | 70488 | MuxC | 0/0 | 100.0 | 99.1 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_257 | 65885 | 67381 | OpmB | 0/0 | 100.0 | 99.3 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_100 | 61687 | 63150 | opmD | 0/0 | 100.0 | 99.0 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_235 | 19751 | 21226 | opmE | 0/0 | 100.0 | 99.2 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_112 | 46353 | 47801 | OpmH | 0/0 | 100.0 | 99.2 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| k141_54 | 10598 | 12037 | OprJ | 0/0 | 100.0 | 99.0 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_193 | 47587 | 49044 | OprM | 0/0 | 100.0 | 98.8 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_257 | 32791 | 34209 | OprN | 0/0 | 100.0 | 99.3 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_251 | 3202 | 4029 | OXA-2 | 0/0 | 100.0 | 100.0 | M95287.4:2455-3283 | OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. | carbapenem, cephalosporin, penam |
| k141_97 | 83924 | 84712 | OXA-488 | 0/0 | 100.0 | 100.0 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| k141_146 | 88549 | 89742 | PDC-2 | 0/0 | 100.0 | 99.6 | FJ666064:0-1194 | PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| k141_68 | 6093 | 7526 | PmpM | 0/0 | 100.0 | 99.6 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| k141_47 | 19428 | 20066 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100.0 | 98.8 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| k141_112 | 68356 | 68688 | Pseudomonas_aeruginosa_emrE | 0/0 | 100.0 | 98.8 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| k141_202 | 22585 | 23055 | Pseudomonas_aeruginosa_soxR | 0/0 | 100.0 | 99.4 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| k141_125 | 772 | 1611 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| k141_251 | 447 | 1307 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| k141_199 | 112125 | 113276 | TriA | 0/0 | 100.0 | 99.0 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_199 | 113273 | 114343 | TriB | 0/0 | 100.0 | 99.3 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_199 | 114340 | 117387 | TriC | 0/0 | 100.0 | 99.3 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_251 | 1976 | 2764 | (AGly)aadA5 | 0/0 | 100 | 99.6 | AF137361:64-852 | (AGly)aadA5 | NA |
| k141_63 | 1402 | 2247 | (AGly)aadA6 | 0/0 | 100 | 100.0 | AF140629:61-906 | (AGly)aadA6 | NA |
| k141_251 | 1385 | 1918 | (AGly)aadB | 0/0 | 100 | 99.2 | JQ690540:4275-4808 | (AGly)aadB | NA |
| k141_146 | 102098 | 102904 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98.8 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| k141_69 | 4766 | 5545 | (AGly)aphA6 | 0/0 | 100 | 98.3 | JF949760:695-1474 | (AGly)aphA6 | NA |
| k141_251 | 3202 | 4029 | (Bla)blaOXA-2 | 0/0 | 100 | 100.0 | HM131431:1-828 | (Bla)blaOXA-2 | NA |
| k141_97 | 83924 | 84712 | (Bla)blaOXA-50 | 0/0 | 100 | 98.5 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| k141_146 | 88549 | 89742 | (Bla)blaPDC-195 | 0/0 | 100 | 99.2 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| k141_251 | 447 | 1307 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| k141_24 | 8616 | 8813 | (Flq)crpP | 0/0 | 100 | 98.0 | NG_062203:101-298 | (Flq)crpP | NA |
| k141_146 | 119609 | 120817 | (Phe)bcr1 | 0/0 | 100 | 99.4 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| k141_47 | 19428 | 20066 | (Phe)catB7 | 0/0 | 100 | 98.8 | AF036933:177-815 | (Phe)catB7 | NA |
| k141_125 | 772 | 1611 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
NCBI
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_251 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_63 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_251 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_146 | 102098 | 102904 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_69 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_251 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_97 | 83924 | 84712 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_146 | 88549 | 89771 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_251 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_47 | 19428 | 20066 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_24 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_227 | 180 | 587 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_125 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
MEGARES
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_251 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_63 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_251 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_146 | 102098 | 102904 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_69 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_251 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_97 | 83924 | 84712 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_146 | 88549 | 89771 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_251 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_47 | 19428 | 20066 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_24 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_227 | 180 | 587 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_125 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
159_pio
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_308 | 1976 | 2764 | aadA5_1 | 0/0 | 100 | 99.6 | AF137361 | aadA5 | Streptomycin |
| k141_161 | 1402 | 2247 | aadA6_1 | 0/0 | 100 | 100.0 | AF140629 | aadA6 | Streptomycin |
| k141_308 | 1385 | 1918 | ant(2’’)-Ia_13 | 0/0 | 100 | 99.8 | DQ176450 | ant(2’’)-Ia | Gentamicin, Tobramycin |
| k141_61 | 102213 | 103019 | aph(3’)-IIb_1 | 0/0 | 100 | 98.8 | X90856 | aph(3’)-IIb | |
| k141_116 | 1147 | 1926 | aph(3’)-VIa_1 | 0/0 | 100 | 98.5 | X07753 | aph(3’)-VIa | Amikacin |
| k141_308 | 3202 | 4029 | blaOXA-2_1 | 0/0 | 100 | 100.0 | DQ112222 | blaOXA-2 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin |
| k141_169 | 31462 | 32250 | blaOXA-488_1 | 0/0 | 100 | 99.9 | CP017969 | blaOXA-488 | |
| k141_61 | 88664 | 89857 | blaPAO_2 | 0/0 | 100 | 99.2 | FJ666065 | blaPAO | |
| k141_308 | 447 | 1307 | blaTEM-1B_1 | 0/0 | 100 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| k141_320 | 19453 | 20091 | catB7_1 | 0/0 | 100 | 98.8 | AF036933 | catB7 | Chloramphenicol |
| k141_41 | 8616 | 8813 | crpP_1 | 0/0 | 100 | 98.0 | HM560971 | crpP | Ciprofloxacin |
| k141_119 | 18521 | 18928 | fosA_4 | 0/0 | 100 | 99.0 | ACWU01000146 | fosA | Fosfomycin |
| k141_143 | 745 | 1611 | sul1_5 | 0/0 | 100 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_308 | 1976 | 2764 | aadA5 | 0/0 | 100.0 | 99.6 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| k141_161 | 1402 | 2247 | aadA6 | 0/0 | 100.0 | 100.0 | AM087411:1611-2457 | aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa | aminoglycoside |
| k141_308 | 1385 | 1918 | ANT(2’’)-Ia | 0/0 | 100.0 | 99.2 | AF078527:3769-4303 | Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii | aminoglycoside |
| k141_61 | 102213 | 103019 | APH(3’)-IIb | 0/0 | 100.0 | 98.8 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| k141_116 | 1147 | 1926 | APH(3’)-VIa | 0/0 | 100.0 | 98.5 | X07753:102-882 | APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii | aminoglycoside |
| k141_70 | 3206 | 3367 | ArmR | 0/0 | 100.0 | 96.9 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_121 | 65354 | 67342 | arnA | 0/0 | 100.0 | 99.5 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| k141_150 | 94388 | 95821 | basS | 0/0 | 100.0 | 98.7 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| k141_61 | 119724 | 120932 | bcr-1 | 0/0 | 100.0 | 99.4 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| k141_41 | 8616 | 8813 | CrpP | 0/0 | 100.0 | 98.0 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| k141_119 | 18521 | 18928 | fosA | 0/0 | 100.0 | 99.5 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| k141_225 | 29648 | 30799 | MexA | 0/0 | 100.0 | 99.3 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_225 | 26492 | 29632 | MexB | 0/0 | 100.0 | 99.3 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_113 | 8209 | 9372 | MexC | 0/0 | 100.0 | 99.4 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_113 | 9400 | 12531 | MexD | 2/2 | 100.0 | 99.3 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_273 | 28340 | 29584 | MexE | 0/0 | 100.0 | 99.4 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_273 | 29606 | 32794 | MexF | 0/0 | 100.0 | 99.7 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_105 | 5058 | 5504 | mexG | 0/0 | 100.0 | 99.8 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| k141_105 | 5512 | 6624 | mexH | 0/0 | 100.0 | 99.5 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_105 | 6637 | 9726 | mexI | 0/0 | 100.0 | 99.6 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_220 | 4527 | 5630 | mexJ | 0/0 | 100.0 | 99.0 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_220 | 1445 | 4522 | mexK | 0/0 | 100.0 | 99.5 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_220 | 5726 | 6364 | mexL | 0/0 | 100.0 | 99.8 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| k141_255 | 49418 | 50575 | mexM | 0/0 | 100.0 | 99.4 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_255 | 46311 | 49421 | mexN | 0/0 | 100.0 | 99.2 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_121 | 25977 | 27134 | mexP | 0/0 | 100.0 | 98.8 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_121 | 22819 | 25980 | mexQ | 0/0 | 100.0 | 99.2 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_246 | 57714 | 58844 | mexV | 0/0 | 100.0 | 98.7 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_246 | 54607 | 57663 | mexW | 0/0 | 100.0 | 99.5 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_174 | 17186 | 18364 | mexX | 8/11 | 99.9 | 98.0 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_174 | 18380 | 21517 | mexY | 8/9 | 99.8 | 98.5 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_273 | 73613 | 74893 | MuxA | 0/0 | 100.0 | 99.3 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_273 | 70485 | 73616 | MuxB | 0/0 | 100.0 | 99.5 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_273 | 67378 | 70488 | MuxC | 0/0 | 100.0 | 99.1 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_273 | 65885 | 67381 | OpmB | 0/0 | 100.0 | 99.3 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_105 | 9723 | 11186 | opmD | 0/0 | 100.0 | 99.0 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_121 | 21347 | 22822 | opmE | 0/0 | 100.0 | 99.2 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_281 | 53445 | 54893 | OpmH | 0/0 | 100.0 | 99.2 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| k141_113 | 12537 | 13976 | OprJ | 0/0 | 100.0 | 99.0 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_225 | 25033 | 26490 | OprM | 0/0 | 100.0 | 98.8 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_273 | 32791 | 34209 | OprN | 0/0 | 100.0 | 99.3 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_308 | 3202 | 4029 | OXA-2 | 0/0 | 100.0 | 100.0 | M95287.4:2455-3283 | OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. | carbapenem, cephalosporin, penam |
| k141_169 | 31462 | 32250 | OXA-488 | 0/0 | 100.0 | 100.0 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| k141_61 | 88664 | 89857 | PDC-2 | 0/0 | 100.0 | 99.6 | FJ666064:0-1194 | PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| k141_8 | 6093 | 7526 | PmpM | 0/0 | 100.0 | 99.6 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| k141_320 | 19453 | 20091 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100.0 | 98.8 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| k141_281 | 32558 | 32890 | Pseudomonas_aeruginosa_emrE | 0/0 | 100.0 | 98.8 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| k141_159 | 10142 | 10612 | Pseudomonas_aeruginosa_soxR | 0/0 | 100.0 | 99.4 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| k141_143 | 772 | 1611 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| k141_308 | 447 | 1307 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| k141_258 | 75083 | 76234 | TriA | 0/0 | 100.0 | 99.0 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_258 | 74016 | 75086 | TriB | 0/0 | 100.0 | 99.3 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_258 | 70972 | 74019 | TriC | 0/0 | 100.0 | 99.3 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_308 | 1976 | 2764 | (AGly)aadA5 | 0/0 | 100 | 99.6 | AF137361:64-852 | (AGly)aadA5 | NA |
| k141_161 | 1402 | 2247 | (AGly)aadA6 | 0/0 | 100 | 100.0 | AF140629:61-906 | (AGly)aadA6 | NA |
| k141_308 | 1385 | 1918 | (AGly)aadB | 0/0 | 100 | 99.2 | JQ690540:4275-4808 | (AGly)aadB | NA |
| k141_61 | 102213 | 103019 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98.8 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| k141_116 | 1147 | 1926 | (AGly)aphA6 | 0/0 | 100 | 98.3 | JF949760:695-1474 | (AGly)aphA6 | NA |
| k141_308 | 3202 | 4029 | (Bla)blaOXA-2 | 0/0 | 100 | 100.0 | HM131431:1-828 | (Bla)blaOXA-2 | NA |
| k141_169 | 31462 | 32250 | (Bla)blaOXA-50 | 0/0 | 100 | 98.5 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| k141_61 | 88664 | 89857 | (Bla)blaPDC-195 | 0/0 | 100 | 99.2 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| k141_308 | 447 | 1307 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| k141_41 | 8616 | 8813 | (Flq)crpP | 0/0 | 100 | 98.0 | NG_062203:101-298 | (Flq)crpP | NA |
| k141_61 | 119724 | 120932 | (Phe)bcr1 | 0/0 | 100 | 99.4 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| k141_320 | 19453 | 20091 | (Phe)catB7 | 0/0 | 100 | 98.8 | AF036933:177-815 | (Phe)catB7 | NA |
| k141_143 | 772 | 1611 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
NCBI
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_308 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_161 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_308 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_61 | 102213 | 103019 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_116 | 1147 | 1926 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_308 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_169 | 31462 | 32250 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_61 | 88664 | 89886 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_308 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_320 | 19453 | 20091 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_41 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_119 | 18521 | 18928 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_143 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
MEGARES
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_308 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_161 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_308 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_61 | 102213 | 103019 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_116 | 1147 | 1926 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_308 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_169 | 31462 | 32250 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_61 | 88664 | 89886 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_308 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_320 | 19453 | 20091 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_41 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_119 | 18521 | 18928 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_143 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
165_pio
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_285 | 1976 | 2764 | aadA5_1 | 0/0 | 100 | 99.6 | AF137361 | aadA5 | Streptomycin |
| k141_145 | 1402 | 2247 | aadA6_1 | 0/0 | 100 | 100.0 | AF140629 | aadA6 | Streptomycin |
| k141_285 | 1385 | 1918 | ant(2’’)-Ia_13 | 0/0 | 100 | 99.8 | DQ176450 | ant(2’’)-Ia | Gentamicin, Tobramycin |
| k141_73 | 102055 | 102861 | aph(3’)-IIb_1 | 0/0 | 100 | 98.8 | X90856 | aph(3’)-IIb | |
| k141_79 | 4766 | 5545 | aph(3’)-VIa_1 | 0/0 | 100 | 98.5 | X07753 | aph(3’)-VIa | Amikacin |
| k141_285 | 3202 | 4029 | blaOXA-2_1 | 0/0 | 100 | 100.0 | DQ112222 | blaOXA-2 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin |
| k141_171 | 31503 | 32291 | blaOXA-488_1 | 0/0 | 100 | 99.9 | CP017969 | blaOXA-488 | |
| k141_73 | 88506 | 89699 | blaPAO_2 | 0/0 | 100 | 99.2 | FJ666065 | blaPAO | |
| k141_285 | 447 | 1307 | blaTEM-1B_1 | 0/0 | 100 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| k141_172 | 165529 | 166167 | catB7_1 | 0/0 | 100 | 98.8 | AF036933 | catB7 | Chloramphenicol |
| k141_19 | 8616 | 8813 | crpP_1 | 0/0 | 100 | 98.0 | HM560971 | crpP | Ciprofloxacin |
| k141_273 | 25374 | 25781 | fosA_4 | 0/0 | 100 | 99.0 | ACWU01000146 | fosA | Fosfomycin |
| k141_189 | 745 | 1611 | sul1_5 | 0/0 | 100 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_285 | 1976 | 2764 | aadA5 | 0/0 | 100.0 | 99.6 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| k141_145 | 1402 | 2247 | aadA6 | 0/0 | 100.0 | 100.0 | AM087411:1611-2457 | aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa | aminoglycoside |
| k141_285 | 1385 | 1918 | ANT(2’’)-Ia | 0/0 | 100.0 | 99.2 | AF078527:3769-4303 | Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii | aminoglycoside |
| k141_73 | 102055 | 102861 | APH(3’)-IIb | 0/0 | 100.0 | 98.8 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| k141_79 | 4766 | 5545 | APH(3’)-VIa | 0/0 | 100.0 | 98.5 | X07753:102-882 | APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii | aminoglycoside |
| k141_192 | 3125 | 3286 | ArmR | 0/0 | 100.0 | 96.9 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_286 | 63727 | 65715 | arnA | 0/0 | 100.0 | 99.5 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| k141_174 | 94388 | 95821 | basS | 0/0 | 100.0 | 98.7 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| k141_73 | 119566 | 120774 | bcr-1 | 0/0 | 100.0 | 99.4 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| k141_19 | 8616 | 8813 | CrpP | 0/0 | 100.0 | 98.0 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| k141_273 | 25374 | 25781 | fosA | 0/0 | 100.0 | 99.5 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| k141_98 | 19654 | 20805 | MexA | 0/0 | 100.0 | 99.3 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_98 | 16498 | 19638 | MexB | 0/0 | 100.0 | 99.3 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_241 | 6270 | 7433 | MexC | 0/0 | 100.0 | 99.4 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_241 | 7461 | 10592 | MexD | 2/2 | 100.0 | 99.3 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_5 | 48428 | 49672 | MexE | 0/0 | 100.0 | 99.4 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_5 | 45218 | 48406 | MexF | 0/0 | 100.0 | 99.7 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_123 | 2385 | 2831 | mexG | 0/0 | 100.0 | 99.8 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| k141_123 | 2839 | 3951 | mexH | 0/0 | 100.0 | 99.5 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_123 | 3964 | 7053 | mexI | 0/0 | 100.0 | 99.6 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_61 | 6645 | 7748 | mexJ | 0/0 | 100.0 | 99.0 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_61 | 7753 | 10830 | mexK | 0/0 | 100.0 | 99.5 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_61 | 5911 | 6549 | mexL | 0/0 | 100.0 | 99.8 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| k141_243 | 69397 | 70554 | mexM | 0/0 | 100.0 | 99.4 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_243 | 66290 | 69400 | mexN | 0/0 | 100.0 | 99.2 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_286 | 24276 | 25433 | mexP | 0/0 | 100.0 | 98.8 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_286 | 21118 | 24279 | mexQ | 0/0 | 100.0 | 99.2 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_257 | 57723 | 58853 | mexV | 0/0 | 100.0 | 98.7 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_257 | 54616 | 57672 | mexW | 0/0 | 100.0 | 99.5 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_113 | 9898 | 11076 | mexX | 8/11 | 99.9 | 98.0 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_113 | 6745 | 9882 | mexY | 8/9 | 99.8 | 98.6 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_5 | 3119 | 4399 | MuxA | 0/0 | 100.0 | 99.3 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_5 | 4396 | 7527 | MuxB | 0/0 | 100.0 | 99.5 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_5 | 7524 | 10634 | MuxC | 0/0 | 100.0 | 99.1 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_5 | 10631 | 12127 | OpmB | 0/0 | 100.0 | 99.3 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_123 | 7050 | 8513 | opmD | 0/0 | 100.0 | 99.0 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_286 | 19646 | 21121 | opmE | 0/0 | 100.0 | 99.2 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_290 | 53305 | 54753 | OpmH | 0/0 | 100.0 | 99.2 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| k141_241 | 10598 | 12037 | OprJ | 0/0 | 100.0 | 99.0 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_98 | 15039 | 16496 | OprM | 0/0 | 100.0 | 98.8 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_5 | 43803 | 45221 | OprN | 0/0 | 100.0 | 99.3 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_285 | 3202 | 4029 | OXA-2 | 0/0 | 100.0 | 100.0 | M95287.4:2455-3283 | OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. | carbapenem, cephalosporin, penam |
| k141_171 | 31503 | 32291 | OXA-488 | 0/0 | 100.0 | 100.0 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| k141_73 | 88506 | 89699 | PDC-2 | 0/0 | 100.0 | 99.6 | FJ666064:0-1194 | PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| k141_214 | 6093 | 7526 | PmpM | 0/0 | 100.0 | 99.6 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| k141_172 | 165529 | 166167 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100.0 | 98.8 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| k141_290 | 32418 | 32750 | Pseudomonas_aeruginosa_emrE | 0/0 | 100.0 | 98.8 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| k141_284 | 19459 | 19929 | Pseudomonas_aeruginosa_soxR | 0/0 | 100.0 | 99.4 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| k141_189 | 772 | 1611 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| k141_285 | 447 | 1307 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| k141_232 | 19391 | 20542 | TriA | 0/0 | 100.0 | 99.0 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_232 | 20539 | 21609 | TriB | 0/0 | 100.0 | 99.3 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_232 | 21606 | 24653 | TriC | 0/0 | 100.0 | 99.3 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_285 | 1976 | 2764 | (AGly)aadA5 | 0/0 | 100 | 99.6 | AF137361:64-852 | (AGly)aadA5 | NA |
| k141_145 | 1402 | 2247 | (AGly)aadA6 | 0/0 | 100 | 100.0 | AF140629:61-906 | (AGly)aadA6 | NA |
| k141_285 | 1385 | 1918 | (AGly)aadB | 0/0 | 100 | 99.2 | JQ690540:4275-4808 | (AGly)aadB | NA |
| k141_73 | 102055 | 102861 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98.8 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| k141_79 | 4766 | 5545 | (AGly)aphA6 | 0/0 | 100 | 98.3 | JF949760:695-1474 | (AGly)aphA6 | NA |
| k141_285 | 3202 | 4029 | (Bla)blaOXA-2 | 0/0 | 100 | 100.0 | HM131431:1-828 | (Bla)blaOXA-2 | NA |
| k141_171 | 31503 | 32291 | (Bla)blaOXA-50 | 0/0 | 100 | 98.5 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| k141_73 | 88506 | 89699 | (Bla)blaPDC-195 | 0/0 | 100 | 99.2 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| k141_285 | 447 | 1307 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| k141_19 | 8616 | 8813 | (Flq)crpP | 0/0 | 100 | 98.0 | NG_062203:101-298 | (Flq)crpP | NA |
| k141_73 | 119566 | 120774 | (Phe)bcr1 | 0/0 | 100 | 99.4 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| k141_172 | 165529 | 166167 | (Phe)catB7 | 0/0 | 100 | 98.8 | AF036933:177-815 | (Phe)catB7 | NA |
| k141_189 | 772 | 1611 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
NCBI
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_285 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_145 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_285 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_73 | 102055 | 102861 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_79 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_285 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_171 | 31503 | 32291 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_73 | 88506 | 89728 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_285 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_172 | 165529 | 166167 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_19 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_273 | 25374 | 25781 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_189 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
MEGARES
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_285 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_145 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_285 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_73 | 102055 | 102861 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_79 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_285 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_171 | 31503 | 32291 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_73 | 88506 | 89728 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_285 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_172 | 165529 | 166167 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_19 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_273 | 25374 | 25781 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_189 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
166_pio
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_278 | 1976 | 2764 | aadA5_1 | 0/0 | 100 | 99.6 | AF137361 | aadA5 | Streptomycin |
| k141_135 | 1402 | 2247 | aadA6_1 | 0/0 | 100 | 100.0 | AF140629 | aadA6 | Streptomycin |
| k141_278 | 1385 | 1918 | ant(2’’)-Ia_13 | 0/0 | 100 | 99.8 | DQ176450 | ant(2’’)-Ia | Gentamicin, Tobramycin |
| k141_224 | 102063 | 102869 | aph(3’)-IIb_1 | 0/0 | 100 | 98.8 | X90856 | aph(3’)-IIb | |
| k141_80 | 1147 | 1926 | aph(3’)-VIa_1 | 0/0 | 100 | 98.5 | X07753 | aph(3’)-VIa | Amikacin |
| k141_278 | 3202 | 4029 | blaOXA-2_1 | 0/0 | 100 | 100.0 | DQ112222 | blaOXA-2 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin |
| k141_44 | 31470 | 32258 | blaOXA-488_1 | 0/0 | 100 | 99.9 | CP017969 | blaOXA-488 | |
| k141_224 | 88514 | 89707 | blaPAO_2 | 0/0 | 100 | 99.2 | FJ666065 | blaPAO | |
| k141_278 | 447 | 1307 | blaTEM-1B_1 | 0/0 | 100 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| k141_230 | 19460 | 20098 | catB7_1 | 0/0 | 100 | 98.8 | AF036933 | catB7 | Chloramphenicol |
| k141_31 | 8616 | 8813 | crpP_1 | 0/0 | 100 | 98.0 | HM560971 | crpP | Ciprofloxacin |
| k141_82 | 18656 | 19063 | fosA_4 | 0/0 | 100 | 99.0 | ACWU01000146 | fosA | Fosfomycin |
| k141_161 | 745 | 1611 | sul1_5 | 0/0 | 100 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_278 | 1976 | 2764 | aadA5 | 0/0 | 100.0 | 99.6 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| k141_135 | 1402 | 2247 | aadA6 | 0/0 | 100.0 | 100.0 | AM087411:1611-2457 | aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa | aminoglycoside |
| k141_278 | 1385 | 1918 | ANT(2’’)-Ia | 0/0 | 100.0 | 99.2 | AF078527:3769-4303 | Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii | aminoglycoside |
| k141_224 | 102063 | 102869 | APH(3’)-IIb | 0/0 | 100.0 | 98.8 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| k141_80 | 1147 | 1926 | APH(3’)-VIa | 0/0 | 100.0 | 98.5 | X07753:102-882 | APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii | aminoglycoside |
| k141_139 | 20405 | 20566 | ArmR | 0/0 | 100.0 | 96.9 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_94 | 131233 | 133221 | arnA | 0/0 | 100.0 | 99.5 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| k141_257 | 81955 | 83388 | basS | 0/0 | 100.0 | 98.7 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| k141_224 | 119574 | 120782 | bcr-1 | 0/0 | 100.0 | 99.4 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| k141_31 | 8616 | 8813 | CrpP | 0/0 | 100.0 | 98.0 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| k141_82 | 18656 | 19063 | fosA | 0/0 | 100.0 | 99.5 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| k141_265 | 42995 | 44146 | MexA | 0/0 | 100.0 | 99.3 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_265 | 44162 | 47302 | MexB | 0/0 | 100.0 | 99.3 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_53 | 31375 | 32538 | MexC | 0/0 | 100.0 | 99.4 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_53 | 28216 | 31347 | MexD | 2/2 | 100.0 | 99.3 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_169 | 28340 | 29584 | MexE | 0/0 | 100.0 | 99.4 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_169 | 29606 | 32794 | MexF | 0/0 | 100.0 | 99.7 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_121 | 40004 | 40450 | mexG | 0/0 | 100.0 | 99.8 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| k141_121 | 40458 | 41570 | mexH | 0/0 | 100.0 | 99.5 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_121 | 41583 | 44672 | mexI | 0/0 | 100.0 | 99.6 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_170 | 6646 | 7749 | mexJ | 0/0 | 100.0 | 99.0 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_170 | 7754 | 10831 | mexK | 0/0 | 100.0 | 99.5 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_170 | 5912 | 6550 | mexL | 0/0 | 100.0 | 99.8 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| k141_232 | 36551 | 37708 | mexM | 0/0 | 100.0 | 99.4 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_232 | 37705 | 40815 | mexN | 0/0 | 100.0 | 99.2 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_94 | 171441 | 172598 | mexP | 0/0 | 100.0 | 98.8 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_94 | 172595 | 175756 | mexQ | 0/0 | 100.0 | 99.2 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_218 | 20698 | 21828 | mexV | 0/0 | 100.0 | 98.7 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_218 | 17591 | 20647 | mexW | 0/0 | 100.0 | 99.5 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_112 | 17331 | 18509 | mexX | 8/11 | 99.9 | 98.0 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_112 | 18525 | 21662 | mexY | 8/9 | 99.8 | 98.5 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_169 | 73613 | 74893 | MuxA | 0/0 | 100.0 | 99.3 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_169 | 70485 | 73616 | MuxB | 0/0 | 100.0 | 99.5 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_169 | 67378 | 70488 | MuxC | 0/0 | 100.0 | 99.1 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_169 | 65885 | 67381 | OpmB | 0/0 | 100.0 | 99.3 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_121 | 44669 | 46132 | opmD | 0/0 | 100.0 | 99.0 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_94 | 175753 | 177228 | opmE | 0/0 | 100.0 | 99.2 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_196 | 4197 | 5645 | OpmH | 0/0 | 100.0 | 99.2 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| k141_53 | 26771 | 28210 | OprJ | 0/0 | 100.0 | 99.0 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_265 | 47304 | 48761 | OprM | 0/0 | 100.0 | 98.8 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_169 | 32791 | 34209 | OprN | 0/0 | 100.0 | 99.3 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_278 | 3202 | 4029 | OXA-2 | 0/0 | 100.0 | 100.0 | M95287.4:2455-3283 | OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. | carbapenem, cephalosporin, penam |
| k141_44 | 31470 | 32258 | OXA-488 | 0/0 | 100.0 | 100.0 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| k141_224 | 88514 | 89707 | PDC-2 | 0/0 | 100.0 | 99.6 | FJ666064:0-1194 | PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| k141_43 | 5205 | 6638 | PmpM | 0/0 | 100.0 | 99.6 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| k141_230 | 19460 | 20098 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100.0 | 98.8 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| k141_281 | 16344 | 16676 | Pseudomonas_aeruginosa_emrE | 0/0 | 100.0 | 98.8 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| k141_129 | 10370 | 10840 | Pseudomonas_aeruginosa_soxR | 0/0 | 100.0 | 99.4 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| k141_161 | 772 | 1611 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| k141_278 | 447 | 1307 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| k141_207 | 48140 | 49291 | TriA | 0/0 | 100.0 | 99.0 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_207 | 47073 | 48143 | TriB | 0/0 | 100.0 | 99.3 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_207 | 44029 | 47076 | TriC | 0/0 | 100.0 | 99.3 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_278 | 1976 | 2764 | (AGly)aadA5 | 0/0 | 100 | 99.6 | AF137361:64-852 | (AGly)aadA5 | NA |
| k141_135 | 1402 | 2247 | (AGly)aadA6 | 0/0 | 100 | 100.0 | AF140629:61-906 | (AGly)aadA6 | NA |
| k141_278 | 1385 | 1918 | (AGly)aadB | 0/0 | 100 | 99.2 | JQ690540:4275-4808 | (AGly)aadB | NA |
| k141_224 | 102063 | 102869 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98.8 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| k141_80 | 1147 | 1926 | (AGly)aphA6 | 0/0 | 100 | 98.3 | JF949760:695-1474 | (AGly)aphA6 | NA |
| k141_278 | 3202 | 4029 | (Bla)blaOXA-2 | 0/0 | 100 | 100.0 | HM131431:1-828 | (Bla)blaOXA-2 | NA |
| k141_44 | 31470 | 32258 | (Bla)blaOXA-50 | 0/0 | 100 | 98.5 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| k141_224 | 88514 | 89707 | (Bla)blaPDC-195 | 0/0 | 100 | 99.2 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| k141_278 | 447 | 1307 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| k141_31 | 8616 | 8813 | (Flq)crpP | 0/0 | 100 | 98.0 | NG_062203:101-298 | (Flq)crpP | NA |
| k141_224 | 119574 | 120782 | (Phe)bcr1 | 0/0 | 100 | 99.4 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| k141_230 | 19460 | 20098 | (Phe)catB7 | 0/0 | 100 | 98.8 | AF036933:177-815 | (Phe)catB7 | NA |
| k141_161 | 772 | 1611 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
NCBI
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_278 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_135 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_278 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_224 | 102063 | 102869 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_80 | 1147 | 1926 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_278 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_44 | 31470 | 32258 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_224 | 88514 | 89736 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_278 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_230 | 19460 | 20098 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_31 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_82 | 18656 | 19063 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_161 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
MEGARES
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_278 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_135 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_278 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_224 | 102063 | 102869 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_80 | 1147 | 1926 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_278 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_44 | 31470 | 32258 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_224 | 88514 | 89736 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_278 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_230 | 19460 | 20098 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_31 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_82 | 18656 | 19063 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_161 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
168_pio
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_284 | 1976 | 2764 | aadA5_1 | 0/0 | 100 | 99.6 | AF137361 | aadA5 | Streptomycin |
| k141_54 | 1402 | 2247 | aadA6_1 | 0/0 | 100 | 100.0 | AF140629 | aadA6 | Streptomycin |
| k141_284 | 1385 | 1918 | ant(2’’)-Ia_13 | 0/0 | 100 | 99.8 | DQ176450 | ant(2’’)-Ia | Gentamicin, Tobramycin |
| k141_105 | 102032 | 102838 | aph(3’)-IIb_1 | 0/0 | 100 | 98.8 | X90856 | aph(3’)-IIb | |
| k141_253 | 4766 | 5545 | aph(3’)-VIa_1 | 0/0 | 100 | 98.5 | X07753 | aph(3’)-VIa | Amikacin |
| k141_284 | 3202 | 4029 | blaOXA-2_1 | 0/0 | 100 | 100.0 | DQ112222 | blaOXA-2 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Ceftazidime, Piperacillin |
| k141_35 | 31474 | 32262 | blaOXA-488_1 | 0/0 | 100 | 99.9 | CP017969 | blaOXA-488 | |
| k141_105 | 88483 | 89676 | blaPAO_2 | 0/0 | 100 | 99.2 | FJ666065 | blaPAO | |
| k141_284 | 447 | 1307 | blaTEM-1B_1 | 0/0 | 100 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| k141_156 | 19454 | 20092 | catB7_1 | 0/0 | 100 | 98.8 | AF036933 | catB7 | Chloramphenicol |
| k141_23 | 8616 | 8813 | crpP_1 | 0/0 | 100 | 98.0 | HM560971 | crpP | Ciprofloxacin |
| k141_273 | 180 | 587 | fosA_4 | 0/0 | 100 | 99.0 | ACWU01000146 | fosA | Fosfomycin |
| k141_201 | 745 | 1611 | sul1_5 | 0/0 | 100 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_284 | 1976 | 2764 | aadA5 | 0/0 | 100.0 | 99.6 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| k141_54 | 1402 | 2247 | aadA6 | 0/0 | 100.0 | 100.0 | AM087411:1611-2457 | aadA6 is an integron-encoded aminoglycoside nucleotidyltransferase gene in P. aeruginosa | aminoglycoside |
| k141_284 | 1385 | 1918 | ANT(2’’)-Ia | 0/0 | 100.0 | 99.2 | AF078527:3769-4303 | Plasmid or integron-encoded nucleotidylylation of 2-deoxystreptamine aminoglycosides at the hydroxyl group at position 2’’ in P. aeruginosa K. pneumoniae Morganella morganii E. coli S. typhimurium C. freundii and A. baumannii | aminoglycoside |
| k141_105 | 102032 | 102838 | APH(3’)-IIb | 0/0 | 100.0 | 98.8 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| k141_253 | 4766 | 5545 | APH(3’)-VIa | 0/0 | 100.0 | 98.5 | X07753:102-882 | APH(3’)-VIa is a plasmid-encoded aminoglycoside phosphotransferase in A. baumannii | aminoglycoside |
| k141_176 | 5784 | 5945 | ArmR | 0/0 | 100.0 | 96.9 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_132 | 20178 | 22166 | arnA | 0/0 | 100.0 | 99.5 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| k141_166 | 88594 | 90027 | basS | 0/0 | 100.0 | 98.7 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| k141_105 | 119543 | 120751 | bcr-1 | 0/0 | 100.0 | 99.4 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| k141_23 | 8616 | 8813 | CrpP | 0/0 | 100.0 | 98.0 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| k141_273 | 180 | 587 | fosA | 0/0 | 100.0 | 99.5 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| k141_68 | 19632 | 20783 | MexA | 0/0 | 100.0 | 99.3 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_68 | 16476 | 19616 | MexB | 0/0 | 100.0 | 99.3 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_160 | 6270 | 7433 | MexC | 0/0 | 100.0 | 99.4 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_160 | 7461 | 10592 | MexD | 2/2 | 100.0 | 99.3 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_113 | 28340 | 29584 | MexE | 0/0 | 100.0 | 99.4 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_113 | 29606 | 32794 | MexF | 0/0 | 100.0 | 99.7 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_86 | 5193 | 5639 | mexG | 0/0 | 100.0 | 99.8 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| k141_86 | 5647 | 6759 | mexH | 0/0 | 100.0 | 99.5 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_86 | 6772 | 9861 | mexI | 0/0 | 100.0 | 99.6 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_236 | 6660 | 7763 | mexJ | 0/0 | 100.0 | 99.0 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_236 | 7768 | 10845 | mexK | 0/0 | 100.0 | 99.5 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| k141_236 | 5926 | 6564 | mexL | 0/0 | 100.0 | 99.8 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| k141_78 | 7999 | 9156 | mexM | 0/0 | 100.0 | 99.4 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_78 | 9153 | 12263 | mexN | 0/0 | 100.0 | 99.2 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| k141_142 | 18206 | 19363 | mexP | 0/0 | 100.0 | 98.8 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_142 | 19360 | 22521 | mexQ | 0/0 | 100.0 | 99.2 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_83 | 57766 | 58896 | mexV | 0/0 | 100.0 | 98.7 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_83 | 54659 | 57715 | mexW | 0/0 | 100.0 | 99.5 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| k141_122 | 9842 | 11020 | mexX | 8/11 | 99.9 | 98.0 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_122 | 6689 | 9826 | mexY | 8/9 | 99.8 | 98.6 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_113 | 73614 | 74894 | MuxA | 0/0 | 100.0 | 99.3 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_113 | 70486 | 73617 | MuxB | 0/0 | 100.0 | 99.5 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_113 | 67379 | 70489 | MuxC | 0/0 | 100.0 | 99.1 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_113 | 65886 | 67382 | OpmB | 0/0 | 100.0 | 99.3 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| k141_86 | 9858 | 11321 | opmD | 0/0 | 100.0 | 99.0 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| k141_142 | 22518 | 23993 | opmE | 0/0 | 100.0 | 99.2 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| k141_172 | 130502 | 131950 | OpmH | 0/0 | 100.0 | 99.2 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| k141_160 | 10598 | 12037 | OprJ | 0/0 | 100.0 | 99.0 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| k141_68 | 15017 | 16474 | OprM | 0/0 | 100.0 | 98.8 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| k141_113 | 32791 | 34209 | OprN | 0/0 | 100.0 | 99.3 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| k141_284 | 3202 | 4029 | OXA-2 | 0/0 | 100.0 | 100.0 | M95287.4:2455-3283 | OXA-2 is a beta-lactamase found in the Enterobacteriaceae family. | carbapenem, cephalosporin, penam |
| k141_35 | 31474 | 32262 | OXA-488 | 0/0 | 100.0 | 100.0 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| k141_105 | 88483 | 89676 | PDC-2 | 0/0 | 100.0 | 99.6 | FJ666064:0-1194 | PDC-2 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| k141_99 | 6092 | 7525 | PmpM | 0/0 | 100.0 | 99.6 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| k141_156 | 19454 | 20092 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100.0 | 98.8 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| k141_149 | 16360 | 16692 | Pseudomonas_aeruginosa_emrE | 0/0 | 100.0 | 98.8 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| k141_260 | 17494 | 17964 | Pseudomonas_aeruginosa_soxR | 0/0 | 100.0 | 99.4 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| k141_201 | 772 | 1611 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| k141_284 | 447 | 1307 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| k141_90 | 120069 | 121220 | TriA | 0/0 | 100.0 | 99.0 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_90 | 119002 | 120072 | TriB | 0/0 | 100.0 | 99.3 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| k141_90 | 115958 | 119005 | TriC | 0/0 | 100.0 | 99.3 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_284 | 1976 | 2764 | (AGly)aadA5 | 0/0 | 100 | 99.6 | AF137361:64-852 | (AGly)aadA5 | NA |
| k141_54 | 1402 | 2247 | (AGly)aadA6 | 0/0 | 100 | 100.0 | AF140629:61-906 | (AGly)aadA6 | NA |
| k141_284 | 1385 | 1918 | (AGly)aadB | 0/0 | 100 | 99.2 | JQ690540:4275-4808 | (AGly)aadB | NA |
| k141_105 | 102032 | 102838 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98.8 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| k141_253 | 4766 | 5545 | (AGly)aphA6 | 0/0 | 100 | 98.3 | JF949760:695-1474 | (AGly)aphA6 | NA |
| k141_284 | 3202 | 4029 | (Bla)blaOXA-2 | 0/0 | 100 | 100.0 | HM131431:1-828 | (Bla)blaOXA-2 | NA |
| k141_35 | 31474 | 32262 | (Bla)blaOXA-50 | 0/0 | 100 | 98.5 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| k141_105 | 88483 | 89676 | (Bla)blaPDC-195 | 0/0 | 100 | 99.2 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| k141_284 | 447 | 1307 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| k141_23 | 8616 | 8813 | (Flq)crpP | 0/0 | 100 | 98.0 | NG_062203:101-298 | (Flq)crpP | NA |
| k141_105 | 119543 | 120751 | (Phe)bcr1 | 0/0 | 100 | 99.4 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| k141_156 | 19454 | 20092 | (Phe)catB7 | 0/0 | 100 | 98.8 | AF036933:177-815 | (Phe)catB7 | NA |
| k141_201 | 772 | 1611 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
NCBI
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_284 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_54 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_284 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_105 | 102032 | 102838 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_253 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_284 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_35 | 31474 | 32262 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_105 | 88483 | 89705 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_284 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_156 | 19454 | 20092 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_23 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_273 | 180 | 587 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_201 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
MEGARES
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| k141_284 | 1976 | 2764 | aadA5 | 0/0 | 100 | 99.9 | NG_047358.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| k141_54 | 1402 | 2247 | aadA6 | 0/0 | 100 | 100.0 | NG_047359.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA6 | STREPTOMYCIN |
| k141_284 | 1385 | 1918 | ant(2’’)-Ia | 0/0 | 100 | 99.8 | NG_047389.1 | aminoglycoside nucleotidyltransferase ANT(2’’)-Ia | GENTAMICIN, KANAMYCIN, TOBRAMYCIN |
| k141_105 | 102032 | 102838 | aph(3’)-IIb | 0/0 | 100 | 98.8 | NG_047424.1 | aminoglycoside O-phosphotransferase APH(3’)-IIb | KANAMYCIN |
| k141_253 | 4766 | 5545 | aph(3’)-VIa | 0/0 | 100 | 98.5 | NG_047448.1 | aminoglycoside O-phosphotransferase APH(3’)-VIa | AMIKACIN, KANAMYCIN |
| k141_284 | 3202 | 4029 | blaOXA-2 | 0/0 | 100 | 100.0 | NG_049496.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | BETA-LACTAM |
| k141_35 | 31474 | 32262 | blaOXA-488 | 0/0 | 100 | 99.9 | NG_049768.1 | OXA-50 family oxacillin-hydrolyzing class D beta-lactamase OXA-488 | BETA-LACTAM |
| k141_105 | 88483 | 89705 | blaPDC-374 | 1/8 | 100 | 98.8 | NG_065926.1 | class C beta-lactamase PDC-374 | CEPHALOSPORIN |
| k141_284 | 447 | 1307 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| k141_156 | 19454 | 20092 | catB7 | 0/0 | 100 | 98.8 | NG_047614.1 | type B-4 chloramphenicol O-acetyltransferase CatB7 | CHLORAMPHENICOL |
| k141_23 | 8616 | 8813 | crpP | 0/0 | 100 | 98.0 | NG_062203.1 | ciprofloxacin resistance protein CrpP | FLUOROQUINOLONE |
| k141_273 | 180 | 587 | fosA-354827590 | 0/0 | 100 | 99.0 | NG_047883.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| k141_201 | 772 | 1611 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
pseudomonas.gbk
Resfinder
## [1] "No antibiotic resistance genes from Resfinder database were found"CARD
## [1] "No antibiotic resistance genes from CARD database were found"ARG-ANNOT
## [1] "No antibiotic resistance genes from ARG-ANNOT database were found"NCBI
## [1] "No antibiotic resistance genes from NCBI database were found"MEGARES
## [1] "No antibiotic resistance genes from MEGARES database were found"Summary figures
Presence/Absence of antibiotic resistance genes (coverage and identity > 90%) on each sample
Select the database
Resfinder
CARD
ARG-ANNOT
NCBI
MEGARES
Plasmid Profiling
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Gaps | Gaps in subject (genome) and query (antibiotic resistance gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
Select sample
15_pio
## [1] "NO PLASMID FOUND!!"120_pio
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_177 | 410 | 1205 | IncQ1_1 | 0/0 | 100 | 100 | M28829.1 | IncQ1_1__M28829.1 |
123_pio
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_80 | 410 | 1205 | IncQ1_1 | 0/0 | 100 | 100 | M28829.1 | IncQ1_1__M28829.1 |
129_pio
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_69 | 410 | 1205 | IncQ1_1 | 0/0 | 100 | 100 | M28829.1 | IncQ1_1__M28829.1 |
159_pio
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_116 | 5487 | 6282 | IncQ1_1 | 0/0 | 100 | 100 | M28829.1 | IncQ1_1__M28829.1 |
165_pio
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_79 | 410 | 1205 | IncQ1_1 | 0/0 | 100 | 100 | M28829.1 | IncQ1_1__M28829.1 |
166_pio
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_80 | 5487 | 6282 | IncQ1_1 | 0/0 | 100 | 100 | M28829.1 | IncQ1_1__M28829.1 |
168_pio
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_253 | 410 | 1205 | IncQ1_1 | 0/0 | 100 | 100 | M28829.1 | IncQ1_1__M28829.1 |
pseudomonas.gbk
## [1] "NO PLASMID FOUND!!"Virulence Factor Determination
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
Select the sample
15_pio
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_151 | 117203 | 118372 | - | alg44 | 100.0 | 99.7 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 118455 | 119939 | - | alg8 | 100.0 | 99.7 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 104738 | 106183 | - | algA | 100.0 | 99.5 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 67396 | 68745 | - | algB | 100.0 | 99.8 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_167 | 104564 | 105955 | + | algC | 100.0 | 99.9 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 120079 | 121389 | - | algD | 100.0 | 99.8 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 114293 | 115765 | - | algE | 100.0 | 99.7 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 106380 | 107030 | - | algF | 100.0 | 99.7 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 112641 | 114272 | - | algG | 100.0 | 99.7 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 108293 | 109855 | - | algI | 100.0 | 99.6 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 107103 | 108278 | - | algJ | 100.0 | 99.5 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 115762 | 117189 | - | algK | 100.0 | 99.7 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 110097 | 111200 | - | algL | 100.0 | 99.7 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_55 | 31430 | 32476 | - | algP/algR3 | 98.9 | 96.7 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_55 | 33293 | 33775 | - | algQ | 100.0 | 98.8 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_55 | 38919 | 39665 | - | algR | 100.0 | 99.3 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_110 | 29145 | 29726 | + | algU | 100.0 | 99.1 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 22456 | 23625 | - | algW | 100.0 | 99.1 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 111204 | 112628 | - | algX | 100.0 | 99.5 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_55 | 39670 | 40746 | - | algZ | 100.0 | 99.6 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_122 | 6210 | 7649 | + | aprA | 100.0 | 99.3 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 69252 | 76682 | + | chpA | 99.9 | 98.7 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 76675 | 77706 | + | chpB | 100.0 | 99.0 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 77703 | 78209 | + | chpC | 100.0 | 98.8 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 78217 | 79011 | + | chpD | 100.0 | 99.2 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 79087 | 79698 | + | chpE | 100.0 | 98.9 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 116819 | 119527 | - | clpV1 | 100.0 | 99.2 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 2616 | 3965 | + | dotU1 | 100.0 | 99.7 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 5621 | 6994 | - | exoT | 100.0 | 99.2 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| k141_181 | 22582 | 24647 | + | exoU | 100.0 | 99.9 | AAC16023 | (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103] |
| k141_106 | 29891 | 31026 | + | exoY | 99.9 | 99.0 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 72186 | 73022 | - | exsA | 100.0 | 99.6 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 73320 | 73733 | - | exsB | 100.0 | 98.3 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 73996 | 74433 | - | exsC | 100.0 | 98.4 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 71258 | 72088 | - | exsD | 100.0 | 98.8 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 73742 | 73987 | - | exsE | 100.0 | 97.2 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 94646 | 95155 | + | fimT | 100.0 | 97.1 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 95261 | 95767 | + | fimU | 100.0 | 99.2 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 19722 | 22496 | - | fimV | 100.0 | 98.3 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 39779 | 40621 | - | fleN | 100.0 | 98.9 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 58405 | 59877 | - | fleQ | 100.0 | 99.2 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 55664 | 57079 | - | fleR | 99.6 | 98.9 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 57084 | 58292 | - | fleS | 100.0 | 99.1 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_45 | 17735 | 18433 | - | flgA | 100.0 | 98.3 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 86285 | 86692 | - | flgB | 100.0 | 100.0 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 85839 | 86279 | - | flgC | 100.0 | 99.8 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 85113 | 85826 | - | flgD | 100.0 | 99.6 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 83697 | 85085 | - | flgE | 100.0 | 99.4 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 82731 | 83480 | - | flgF | 100.0 | 99.3 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 81899 | 82684 | - | flgG | 100.0 | 99.5 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 81158 | 81853 | - | flgH | 100.0 | 98.8 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 80037 | 81146 | - | flgI | 100.0 | 99.4 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 78824 | 80026 | - | flgJ | 100.0 | 99.1 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 76757 | 78805 | - | flgK | 99.7 | 86.7 | NP_249777 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_45 | 17267 | 17590 | - | flgM | 100.0 | 98.2 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_45 | 16742 | 17212 | - | flgN | 100.0 | 98.7 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 42133 | 44256 | - | flhA | 100.0 | 99.3 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 47101 | 48237 | - | flhB | 100.0 | 99.7 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 40760 | 42049 | - | flhF | 100.0 | 99.5 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 39039 | 39782 | - | fliA | 100.0 | 99.7 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 55088 | 55417 | - | fliE | 100.0 | 99.7 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 53269 | 55065 | - | fliF | 100.0 | 99.5 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 52247 | 53263 | - | fliG | 100.0 | 99.6 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 51439 | 52245 | - | fliH | 100.0 | 99.1 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 50094 | 51449 | - | fliI | 100.0 | 99.1 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 49637 | 50080 | - | fliJ | 100.0 | 99.1 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 52793 | 54076 | - | fliK | 100.0 | 98.2 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 52028 | 52549 | - | fliL | 100.0 | 100.0 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 51049 | 52020 | - | fliM | 100.0 | 99.9 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 50548 | 51021 | - | fliN | 100.0 | 98.5 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 50094 | 50546 | - | fliO | 100.0 | 98.9 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 49330 | 50097 | - | fliP | 100.0 | 99.3 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 49016 | 49285 | - | fliQ | 100.0 | 99.6 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 48240 | 49016 | - | fliR | 100.0 | 99.2 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 4635 | 6797 | - | fptA | 100.0 | 99.3 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 123910 | 124398 | - | hcp1 | 100.0 | 100.0 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 126590 | 127624 | - | hsiA1 | 100.0 | 99.8 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 125983 | 126501 | - | hsiB1/vipA | 100.0 | 99.8 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 124474 | 125970 | - | hsiC1/vipB | 100.0 | 99.5 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 122897 | 123742 | - | hsiE1 | 100.0 | 98.7 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 122386 | 122895 | - | hsiF1 | 100.0 | 98.8 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 120530 | 122389 | - | hsiG1 | 100.0 | 99.1 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 119520 | 120566 | - | hsiH1 | 100.0 | 98.8 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 1275 | 2609 | + | hsiJ1 | 100.0 | 99.6 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 4187 | 7495 | + | icmF1/tssM1 | 100.0 | 99.1 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_73 | 151766 | 153022 | + | lasA | 100.0 | 98.0 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| k141_39 | 137 | 1633 | - | lasB | 100.0 | 98.5 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 64713 | 65318 | - | lasI | 100.0 | 99.8 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 795 | 1259 | + | lip1 | 100.0 | 100.0 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_116 | 8982 | 9200 | - | mbtH-like | 100.0 | 100.0 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_107 | 25830 | 26681 | + | motA | 100.0 | 98.2 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_107 | 26701 | 27744 | + | motB | 100.0 | 99.3 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 33304 | 34044 | - | motC | 100.0 | 99.2 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 32401 | 33291 | - | motD | 100.0 | 98.7 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 137255 | 138220 | + | motY | 100.0 | 99.3 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_110 | 29758 | 30342 | + | mucA | 100.0 | 99.1 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_110 | 30351 | 31301 | + | mucB | 100.0 | 99.0 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_110 | 31298 | 31753 | + | mucC | 100.0 | 99.6 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_110 | 31793 | 33217 | + | mucD | 100.0 | 98.9 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_44 | 10288 | 10557 | + | mucE | 100.0 | 98.5 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_186 | 39448 | 40800 | - | mucP | 100.0 | 99.3 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_82 | 15756 | 17186 | + | pchA | 100.0 | 99.0 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_82 | 15454 | 15759 | + | pchB | 100.0 | 99.7 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_82 | 14699 | 15454 | + | pchC | 100.0 | 99.3 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_82 | 13059 | 14702 | + | pchD | 100.0 | 99.2 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_82 | 7429 | 11745 | - | pchE | 100.0 | 98.9 | NP_252916 | (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_82 | 2003 | 7432 | - | pchF | 100.0 | 98.8 | NP_252915 | (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_82 | 957 | 2006 | - | pchG | 100.0 | 98.9 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 6889 | 8613 | - | pchI | 100.0 | 99.0 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_82 | 11939 | 12829 | - | pchR | 100.0 | 99.0 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 81946 | 82224 | - | pcr1 | 100.0 | 99.6 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 81588 | 81959 | - | pcr2 | 100.0 | 98.9 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 81226 | 81591 | - | pcr3 | 100.0 | 98.4 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 80892 | 81221 | - | pcr4 | 100.0 | 99.1 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 78775 | 80895 | - | pcrD | 100.0 | 99.0 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 78020 | 78316 | - | pcrG | 100.0 | 99.7 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 76611 | 77117 | - | pcrH | 100.0 | 99.2 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 78344 | 78778 | - | pcrR | 100.0 | 99.3 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 77126 | 78010 | - | pcrV | 100.0 | 99.0 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_143 | 184 | 672 | + | phzB1 | 100.0 | 98.6 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_144 | 244 | 678 | + | phzB1 | 89.0 | 89.7 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_46 | 4045 | 5262 | - | phzC1 | 100.0 | 99.3 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_46 | 3425 | 4048 | - | phzD1 | 100.0 | 99.2 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_46 | 1545 | 3428 | - | phzE1 | 100.0 | 99.2 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_46 | 695 | 1531 | - | phzF1 | 100.0 | 99.4 | NP_252904 | (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_46 | 25 | 669 | - | phzG1 | 100.0 | 99.8 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 30174 | 32006 | - | phzH | 100.0 | 99.1 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 1051 | 2055 | + | phzM | 100.0 | 99.1 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 297 | 1505 | + | phzS | 100.0 | 98.4 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 66815 | 68515 | + | pilB | 100.0 | 88.4 | NP_253216 | (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 101569 | 101994 | + | pilE | 100.0 | 99.5 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_171 | 16062 | 16820 | + | pilF | 100.0 | 98.8 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 64765 | 65172 | + | pilG | 100.0 | 100.0 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 65219 | 65584 | + | pilH | 100.0 | 99.7 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 65635 | 66171 | + | pilI | 100.0 | 99.8 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 66256 | 68304 | + | pilJ | 100.0 | 99.6 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 68365 | 69240 | + | pilK | 100.0 | 99.3 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 26994 | 28058 | - | pilM | 100.0 | 99.5 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 26398 | 26994 | - | pilN | 100.0 | 99.2 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 25778 | 26401 | - | pilO | 100.0 | 98.4 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 25257 | 25781 | - | pilP | 100.0 | 99.4 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 23059 | 25203 | - | pilQ | 100.0 | 97.2 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 92034 | 93371 | + | pilR | 100.0 | 99.4 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 90427 | 92019 | + | pilS | 100.0 | 99.2 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 51694 | 52728 | + | pilT | 100.0 | 99.4 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 52906 | 54054 | + | pilU | 100.0 | 99.8 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 95758 | 96315 | + | pilV | 100.0 | 99.3 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 96312 | 97136 | + | pilW | 100.0 | 98.9 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 97133 | 97720 | + | pilX | 100.0 | 99.3 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 97732 | 101223 | + | pilY1 | 99.6 | 91.6 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 101225 | 101572 | + | pilY2 | 100.0 | 99.1 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_131 | 38195 | 40387 | + | plcH | 100.0 | 99.6 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 75458 | 76630 | - | popB | 100.0 | 99.5 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 74559 | 75446 | - | popD | 100.0 | 97.3 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 82205 | 83071 | - | popN | 100.0 | 99.4 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 8918 | 12016 | + | ppkA | 100.0 | 99.5 | NP_248764 | (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 8182 | 8910 | + | pppA | 100.0 | 99.6 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 70802 | 71224 | - | pscB | 100.0 | 99.3 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 69000 | 70802 | - | pscC | 100.0 | 99.3 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 67700 | 68998 | - | pscD | 100.0 | 99.1 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 67534 | 67737 | - | pscE | 100.0 | 98.0 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 67274 | 67531 | - | pscF | 100.0 | 99.6 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 66924 | 67271 | - | pscG | 100.0 | 99.1 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 66496 | 66927 | - | pscH | 100.0 | 99.1 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 66158 | 66496 | - | pscI | 100.0 | 99.7 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 65415 | 66161 | - | pscJ | 100.0 | 99.5 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 64786 | 65406 | - | pscK | 99.0 | 97.8 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 64163 | 64807 | - | pscL | 100.0 | 98.8 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 83262 | 84584 | + | pscN | 100.0 | 99.5 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 84581 | 85057 | + | pscO | 100.0 | 99.4 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 85045 | 86127 | + | pscP | 96.8 | 94.8 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 86124 | 87053 | + | pscQ | 100.0 | 99.1 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 87050 | 87703 | + | pscR | 100.0 | 99.4 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 87706 | 87972 | + | pscS | 100.0 | 100.0 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 87969 | 88757 | + | pscT | 100.0 | 99.1 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_114 | 88754 | 89803 | + | pscU | 100.0 | 98.9 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_187 | 2472 | 3410 | - | ptxR | 100.0 | 98.7 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_5 | 46291 | 47277 | + | pvcA | 100.0 | 99.4 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_187 | 226 | 1728 | + | pvcC | 100.0 | 98.9 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_187 | 1721 | 2367 | + | pvcD | 99.8 | 97.8 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 6174 | 7505 | - | pvdA | 100.0 | 83.3 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 19465 | 20292 | - | pvdF | 100.0 | 82.2 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_116 | 36321 | 37085 | - | pvdG | 100.0 | 98.6 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_116 | 9278 | 10687 | - | pvdH | 100.0 | 99.2 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_116 | 23219 | 36247 | - | pvdL | 100.0 | 99.1 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 15862 | 17208 | + | pvdM | 99.8 | 95.6 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 17231 | 18514 | + | pvdN | 100.0 | 99.2 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 18543 | 19397 | + | pvdO | 100.0 | 98.1 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 14002 | 15648 | - | pvdP | 99.8 | 85.0 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 3763 | 6051 | - | pvdQ | 100.0 | 99.3 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_116 | 37728 | 38291 | + | pvdS | 100.0 | 97.7 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_180 | 7314 | 8201 | + | rhlA | 100.0 | 99.7 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_180 | 8267 | 9547 | + | rhlB | 100.0 | 99.8 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 24400 | 25377 | + | rhlC | 100.0 | 98.9 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| k141_93 | 23320 | 23925 | - | rhlI | 100.0 | 98.7 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 7492 | 8172 | + | tagF/pppB | 100.0 | 98.8 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 15698 | 16624 | + | tagQ | 100.0 | 95.9 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 13924 | 15636 | + | tagR | 100.0 | 99.4 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 12732 | 13931 | + | tagS | 100.0 | 99.3 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_154 | 12013 | 12732 | + | tagT | 100.0 | 98.3 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 4973 | 6889 | + | toxA | 100.0 | 98.8 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| k141_73 | 121425 | 121889 | - | tse1 | 100.0 | 99.8 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_80 | 6310 | 6786 | + | tse2 | 100.0 | 98.7 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_180 | 815 | 2041 | - | tse3 | 100.0 | 99.2 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 114841 | 116772 | - | vgrG1a | 100.0 | 99.2 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 109895 | 112120 | - | vgrG1b | 100.0 | 98.7 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_102 | 14080 | 15357 | - | waaA | 100.0 | 99.2 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_102 | 40045 | 41112 | - | waaC | 100.0 | 99.2 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_102 | 41109 | 42146 | - | waaF | 100.0 | 99.5 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_102 | 38927 | 40048 | - | waaG | 100.0 | 99.2 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_102 | 38124 | 38930 | - | waaP | 100.0 | 99.3 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_72 | 69743 | 70615 | + | xcpA/pilD | 100.0 | 99.3 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 7929 | 8636 | + | xcpP | 100.0 | 99.7 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 8641 | 10617 | + | xcpQ | 100.0 | 99.0 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 6201 | 7709 | - | xcpR | 100.0 | 99.5 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 4984 | 6201 | - | xcpS | 100.0 | 99.3 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 4533 | 4979 | - | xcpT | 100.0 | 99.3 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 4008 | 4526 | - | xcpU | 100.0 | 98.5 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 3622 | 4011 | - | xcpV | 100.0 | 99.2 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 2921 | 3625 | - | xcpW | 98.7 | 98.3 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 1923 | 2924 | - | xcpX | 100.0 | 99.1 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 778 | 1926 | - | xcpY | 100.0 | 98.3 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_190 | 252 | 776 | - | xcpZ | 100.0 | 99.2 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
120_pio
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_178 | 3931 | 5100 | + | alg44 | 100.0 | 99.7 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 2364 | 3848 | + | alg8 | 100.0 | 99.7 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 16120 | 17565 | + | algA | 100.0 | 99.5 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_256 | 78523 | 79872 | + | algB | 100.0 | 99.8 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_241 | 966 | 2357 | - | algC | 100.0 | 99.9 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 914 | 2224 | + | algD | 100.0 | 99.8 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 6538 | 8010 | + | algE | 100.0 | 99.7 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 15273 | 15923 | + | algF | 100.0 | 99.7 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 8031 | 9662 | + | algG | 100.0 | 99.7 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 12448 | 14010 | + | algI | 100.0 | 99.6 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 14025 | 15200 | + | algJ | 100.0 | 99.5 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 5114 | 6541 | + | algK | 100.0 | 99.7 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 11103 | 12206 | + | algL | 100.0 | 99.7 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_219 | 12266 | 13146 | + | algP/algR3 | 82.9 | 94.1 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_219 | 10967 | 11449 | + | algQ | 100.0 | 98.8 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_219 | 5077 | 5823 | + | algR | 100.0 | 99.3 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_84 | 38082 | 38663 | - | algU | 100.0 | 99.1 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 22441 | 23610 | - | algW | 100.0 | 99.1 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 9675 | 11099 | + | algX | 100.0 | 99.5 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_219 | 3996 | 5072 | + | algZ | 100.0 | 99.6 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 8055 | 9494 | - | aprA | 100.0 | 99.3 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 25383 | 32813 | + | chpA | 99.9 | 98.7 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 32806 | 33837 | + | chpB | 100.0 | 99.0 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 33834 | 34340 | + | chpC | 100.0 | 98.8 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 34348 | 35142 | + | chpD | 100.0 | 99.2 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 35218 | 35829 | + | chpE | 100.0 | 98.9 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 41823 | 44531 | + | clpV1 | 100.0 | 99.2 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 28686 | 30035 | - | dotU1 | 100.0 | 99.7 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 5611 | 6984 | - | exoT | 100.0 | 99.2 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| k141_20 | 1069 | 3132 | + | exoU | 100.0 | 100.0 | AAC16023 | (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103] |
| k141_0 | 30914 | 32049 | + | exoY | 99.9 | 99.0 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 24490 | 25326 | - | exsA | 100.0 | 99.6 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 25624 | 26037 | - | exsB | 100.0 | 98.3 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 26300 | 26737 | - | exsC | 100.0 | 98.4 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 23562 | 24392 | - | exsD | 100.0 | 98.8 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 26046 | 26291 | - | exsE | 100.0 | 97.2 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 31901 | 33358 | - | fha1 | 97.6 | 96.7 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 15730 | 16239 | + | fimT | 100.0 | 97.1 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 16345 | 16851 | + | fimU | 100.0 | 99.2 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 19722 | 22496 | - | fimV | 100.0 | 98.3 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 29144 | 29986 | + | fleN | 100.0 | 98.9 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 37441 | 38913 | + | fleQ | 100.0 | 99.2 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 40239 | 41654 | + | fleR | 99.6 | 98.9 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 39026 | 40234 | + | fleS | 100.0 | 99.1 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_76 | 26352 | 27050 | + | flgA | 100.0 | 98.3 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 10627 | 11034 | + | flgB | 100.0 | 100.0 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 11040 | 11480 | + | flgC | 100.0 | 99.8 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 11493 | 12206 | + | flgD | 100.0 | 99.6 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 12234 | 13622 | + | flgE | 100.0 | 99.4 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 13839 | 14588 | + | flgF | 100.0 | 99.3 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 14635 | 15420 | + | flgG | 100.0 | 99.5 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 15466 | 16161 | + | flgH | 100.0 | 98.8 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 16173 | 17282 | + | flgI | 100.0 | 99.4 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 17293 | 18495 | + | flgJ | 100.0 | 99.1 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 18514 | 20562 | + | flgK | 99.7 | 86.7 | NP_249777 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_76 | 27195 | 27518 | + | flgM | 100.0 | 98.2 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_76 | 27573 | 28043 | + | flgN | 100.0 | 98.7 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 25509 | 27632 | + | flhA | 100.0 | 99.3 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 21528 | 22664 | + | flhB | 100.0 | 99.7 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 27716 | 29005 | + | flhF | 100.0 | 99.5 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 29983 | 30726 | + | fliA | 100.0 | 99.7 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 41901 | 42230 | + | fliE | 100.0 | 99.7 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 42253 | 44049 | + | fliF | 100.0 | 99.5 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 44055 | 45071 | + | fliG | 100.0 | 99.6 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 45073 | 45879 | + | fliH | 100.0 | 99.1 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 45869 | 47224 | + | fliI | 100.0 | 99.1 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 47238 | 47681 | + | fliJ | 100.0 | 99.1 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 15689 | 16972 | + | fliK | 100.0 | 98.2 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 17216 | 17737 | + | fliL | 100.0 | 100.0 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 17745 | 18716 | + | fliM | 100.0 | 99.9 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 18744 | 19217 | + | fliN | 100.0 | 98.5 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 19219 | 19671 | + | fliO | 100.0 | 98.9 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 19668 | 20435 | + | fliP | 100.0 | 99.3 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 20480 | 20749 | + | fliQ | 100.0 | 99.6 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 20749 | 21525 | + | fliR | 100.0 | 99.2 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 2709 | 4871 | + | fptA | 100.0 | 99.3 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 36952 | 37440 | + | hcp1 | 100.0 | 100.0 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 33726 | 34760 | + | hsiA1 | 100.0 | 99.8 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 34849 | 35367 | + | hsiB1/vipA | 100.0 | 99.8 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 35380 | 36876 | + | hsiC1/vipB | 100.0 | 99.5 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 37608 | 38453 | + | hsiE1 | 100.0 | 98.7 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 38455 | 38964 | + | hsiF1 | 100.0 | 98.8 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 38961 | 40820 | + | hsiG1 | 100.0 | 99.2 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 40784 | 41830 | + | hsiH1 | 100.0 | 98.8 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 30042 | 31376 | - | hsiJ1 | 100.0 | 99.6 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 25156 | 28464 | - | icmF1/tssM1 | 100.0 | 99.1 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 35846 | 37102 | - | lasA | 100.0 | 98.0 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| k141_215 | 15801 | 17297 | + | lasB | 100.0 | 98.5 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 4447 | 5052 | + | lasI | 100.0 | 99.8 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 31392 | 31856 | - | lip1 | 100.0 | 100.0 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 8982 | 9200 | - | mbtH-like | 100.0 | 100.0 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_208 | 21171 | 22022 | - | motA | 100.0 | 98.2 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_208 | 20108 | 21151 | - | motB | 100.0 | 99.3 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 35721 | 36461 | + | motC | 100.0 | 99.2 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 36474 | 37364 | + | motD | 100.0 | 98.7 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_185 | 29311 | 30276 | - | motY | 100.0 | 99.3 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_84 | 37466 | 38050 | - | mucA | 100.0 | 99.1 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_84 | 36507 | 37457 | - | mucB | 100.0 | 99.0 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_84 | 36055 | 36510 | - | mucC | 100.0 | 99.6 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_84 | 34591 | 36015 | - | mucD | 100.0 | 98.9 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 128010 | 128279 | - | mucE | 100.0 | 98.5 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_178 | 125984 | 127336 | - | mucP | 100.0 | 99.3 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_274 | 6322 | 7752 | - | pchA | 100.0 | 99.0 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_274 | 7749 | 8054 | - | pchB | 100.0 | 99.7 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_274 | 8054 | 8809 | - | pchC | 100.0 | 99.3 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_274 | 8806 | 10449 | - | pchD | 100.0 | 99.2 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_274 | 11763 | 16079 | + | pchE | 100.0 | 98.9 | NP_252916 | (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_274 | 16076 | 20566 | + | pchF | 82.7 | 98.9 | NP_252915 | (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 895 | 1944 | - | pchG | 100.0 | 98.9 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_111 | 893 | 2617 | + | pchI | 100.0 | 99.0 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_274 | 10679 | 11569 | + | pchR | 100.0 | 99.0 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 34250 | 34528 | - | pcr1 | 100.0 | 99.6 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 33892 | 34263 | - | pcr2 | 100.0 | 98.9 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 33530 | 33895 | - | pcr3 | 100.0 | 98.4 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 33196 | 33525 | - | pcr4 | 100.0 | 99.1 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 31079 | 33199 | - | pcrD | 100.0 | 99.0 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 30324 | 30620 | - | pcrG | 100.0 | 99.7 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 28915 | 29421 | - | pcrH | 100.0 | 99.2 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 30648 | 31082 | - | pcrR | 100.0 | 99.3 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 29430 | 30314 | - | pcrV | 100.0 | 99.0 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 184 | 672 | + | phzB1 | 100.0 | 98.6 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_71 | 244 | 678 | + | phzB1 | 89.0 | 89.7 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 4045 | 5262 | - | phzC1 | 100.0 | 99.3 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 3425 | 4048 | - | phzD1 | 100.0 | 99.5 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 1545 | 3428 | - | phzE1 | 100.0 | 99.0 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 695 | 1531 | - | phzF1 | 100.0 | 99.5 | NP_252904 | (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 25 | 669 | - | phzG1 | 100.0 | 99.8 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 657 | 2489 | + | phzH | 100.0 | 99.1 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 1051 | 2055 | + | phzM | 100.0 | 99.1 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_92 | 297 | 1505 | + | phzS | 100.0 | 98.4 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_47 | 24503 | 26202 | - | pilB | 99.9 | 88.4 | NP_253216 | (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 22653 | 23078 | + | pilE | 100.0 | 99.5 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 16093 | 16851 | + | pilF | 100.0 | 98.8 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 20896 | 21303 | + | pilG | 100.0 | 100.0 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 21350 | 21715 | + | pilH | 100.0 | 99.7 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 21766 | 22302 | + | pilI | 100.0 | 99.8 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 22387 | 24435 | + | pilJ | 100.0 | 99.7 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 24496 | 25371 | + | pilK | 100.0 | 99.3 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_217 | 33497 | 34561 | - | pilM | 100.0 | 99.5 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_217 | 32901 | 33497 | - | pilN | 100.0 | 99.2 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_217 | 32281 | 32904 | - | pilO | 100.0 | 98.4 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_217 | 31760 | 32284 | - | pilP | 100.0 | 99.4 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_217 | 29562 | 31706 | - | pilQ | 100.0 | 97.2 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 13118 | 14455 | + | pilR | 100.0 | 99.5 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 11511 | 13103 | + | pilS | 100.0 | 99.2 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 7825 | 8859 | + | pilT | 100.0 | 99.4 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 9037 | 10185 | + | pilU | 100.0 | 99.8 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 16842 | 17399 | + | pilV | 100.0 | 99.3 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 17396 | 18220 | + | pilW | 100.0 | 98.9 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 18217 | 18804 | + | pilX | 100.0 | 99.3 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 18816 | 22307 | + | pilY1 | 99.6 | 91.6 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_160 | 22309 | 22656 | + | pilY2 | 100.0 | 99.1 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 22296 | 24488 | + | plcH | 100.0 | 99.6 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 27762 | 28934 | - | popB | 100.0 | 99.5 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 26863 | 27750 | - | popD | 100.0 | 97.3 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 34509 | 35375 | - | popN | 100.0 | 99.4 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 20635 | 23733 | - | ppkA | 100.0 | 99.5 | NP_248764 | (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 23741 | 24469 | - | pppA | 100.0 | 99.6 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 23106 | 23528 | - | pscB | 100.0 | 99.3 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 21304 | 23106 | - | pscC | 100.0 | 99.3 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 20004 | 21302 | - | pscD | 100.0 | 99.1 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 19838 | 20041 | - | pscE | 100.0 | 98.0 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 19578 | 19835 | - | pscF | 100.0 | 99.6 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 19228 | 19575 | - | pscG | 100.0 | 99.1 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 18800 | 19231 | - | pscH | 100.0 | 99.3 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 18462 | 18800 | - | pscI | 100.0 | 99.7 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 17719 | 18465 | - | pscJ | 100.0 | 99.5 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 17090 | 17710 | - | pscK | 99.0 | 97.8 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 16467 | 17111 | - | pscL | 100.0 | 98.8 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 35566 | 36888 | + | pscN | 100.0 | 99.5 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 36885 | 37361 | + | pscO | 100.0 | 99.4 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 37349 | 38431 | + | pscP | 96.8 | 94.8 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 38428 | 39357 | + | pscQ | 100.0 | 99.1 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 39354 | 40007 | + | pscR | 100.0 | 99.4 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 40010 | 40276 | + | pscS | 100.0 | 100.0 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 40273 | 41061 | + | pscT | 100.0 | 99.1 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 41058 | 42107 | + | pscU | 100.0 | 98.9 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_49 | 31405 | 32343 | + | ptxR | 100.0 | 98.7 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 1027 | 2013 | - | pvcA | 100.0 | 99.4 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 134 | 1009 | - | pvcB | 100.0 | 99.0 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_49 | 33087 | 34589 | - | pvcC | 100.0 | 98.8 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_49 | 32448 | 33094 | - | pvcD | 99.8 | 97.8 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_93 | 60768 | 62099 | - | pvdA | 100.0 | 83.3 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_93 | 74059 | 74886 | - | pvdF | 100.0 | 82.2 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 36321 | 37085 | - | pvdG | 100.0 | 98.6 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 9278 | 10687 | - | pvdH | 100.0 | 99.2 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 23219 | 36247 | - | pvdL | 100.0 | 99.1 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_93 | 70456 | 71802 | + | pvdM | 99.8 | 95.6 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_93 | 71825 | 73108 | + | pvdN | 100.0 | 99.2 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_93 | 73137 | 73991 | + | pvdO | 100.0 | 98.1 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_93 | 68596 | 70242 | - | pvdP | 99.8 | 85.0 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_93 | 58357 | 60645 | - | pvdQ | 100.0 | 99.3 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 37728 | 38291 | + | pvdS | 100.0 | 97.7 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_246 | 7314 | 8201 | + | rhlA | 100.0 | 99.7 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_246 | 8267 | 9547 | + | rhlB | 100.0 | 99.8 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_240 | 584 | 1561 | - | rhlC | 100.0 | 98.9 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| k141_246 | 10682 | 11287 | + | rhlI | 100.0 | 98.7 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 24479 | 25159 | - | tagF/pppB | 100.0 | 98.8 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 16039 | 16953 | - | tagQ | 100.0 | 98.0 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 17015 | 18727 | - | tagR | 100.0 | 99.4 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 18720 | 19919 | - | tagS | 100.0 | 99.3 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 19919 | 20638 | - | tagT | 100.0 | 98.3 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 4973 | 6889 | + | toxA | 100.0 | 98.8 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 66979 | 67443 | + | tse1 | 100.0 | 99.8 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 6330 | 6806 | + | tse2 | 100.0 | 98.7 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_246 | 815 | 2041 | - | tse3 | 100.0 | 99.2 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 44578 | 46509 | + | vgrG1a | 100.0 | 99.2 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_4 | 49230 | 51455 | + | vgrG1b | 100.0 | 98.7 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 33811 | 35088 | + | waaA | 100.0 | 99.2 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 8056 | 9123 | + | waaC | 100.0 | 99.2 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 7022 | 8059 | + | waaF | 100.0 | 99.5 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 9120 | 10241 | + | waaG | 100.0 | 99.2 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 10238 | 11044 | + | waaP | 100.0 | 99.3 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_47 | 22403 | 23275 | - | xcpA/pilD | 100.0 | 99.3 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 7929 | 8636 | + | xcpP | 100.0 | 99.7 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 8641 | 10617 | + | xcpQ | 100.0 | 99.0 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 6201 | 7709 | - | xcpR | 100.0 | 99.4 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 4984 | 6201 | - | xcpS | 100.0 | 99.3 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 4533 | 4979 | - | xcpT | 100.0 | 99.3 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 4008 | 4526 | - | xcpU | 100.0 | 98.5 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 3622 | 4011 | - | xcpV | 100.0 | 99.2 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 2921 | 3625 | - | xcpW | 98.7 | 98.3 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 1923 | 2924 | - | xcpX | 100.0 | 99.1 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 778 | 1926 | - | xcpY | 100.0 | 98.3 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 252 | 776 | - | xcpZ | 100.0 | 99.2 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
123_pio
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_266 | 47470 | 48639 | + | alg44 | 100.0 | 99.7 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 45903 | 47387 | + | alg8 | 100.0 | 99.7 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 59659 | 61104 | + | algA | 100.0 | 99.5 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 21494 | 22843 | + | algB | 100.0 | 99.8 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_83 | 104569 | 105960 | + | algC | 100.0 | 99.9 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 44453 | 45763 | + | algD | 100.0 | 99.8 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 50077 | 51549 | + | algE | 100.0 | 99.7 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 58812 | 59462 | + | algF | 100.0 | 99.7 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 51570 | 53201 | + | algG | 100.0 | 99.7 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 55987 | 57549 | + | algI | 100.0 | 99.6 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 57564 | 58739 | + | algJ | 100.0 | 99.5 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 48653 | 50080 | + | algK | 100.0 | 99.7 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 54642 | 55745 | + | algL | 100.0 | 99.7 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_99 | 12266 | 13312 | + | algP/algR3 | 98.9 | 96.7 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_99 | 10967 | 11449 | + | algQ | 100.0 | 98.8 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_99 | 5077 | 5823 | + | algR | 100.0 | 99.3 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 37953 | 38534 | - | algU | 100.0 | 99.1 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_1 | 22461 | 23630 | - | algW | 100.0 | 99.1 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 53214 | 54638 | + | algX | 100.0 | 99.5 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_99 | 3996 | 5072 | + | algZ | 100.0 | 99.6 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_240 | 5215 | 6654 | - | aprA | 100.0 | 99.3 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 21333 | 28763 | - | chpA | 99.9 | 98.7 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 20309 | 21340 | - | chpB | 100.0 | 99.0 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 19806 | 20312 | - | chpC | 100.0 | 98.8 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 19004 | 19798 | - | chpD | 100.0 | 99.2 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 18317 | 18928 | - | chpE | 100.0 | 98.9 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 19091 | 21799 | + | clpV1 | 100.0 | 99.2 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 5954 | 7303 | - | dotU1 | 100.0 | 99.7 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 28204 | 29577 | - | exoT | 100.0 | 99.2 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| k141_22 | 1069 | 3132 | + | exoU | 100.0 | 100.0 | AAC16023 | (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103] |
| k141_180 | 30033 | 31168 | + | exoY | 99.9 | 99.0 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 5490 | 6326 | - | exsA | 100.0 | 99.6 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 6624 | 7037 | - | exsB | 100.0 | 98.3 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 7300 | 7737 | - | exsC | 100.0 | 98.4 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 4562 | 5392 | - | exsD | 100.0 | 98.8 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 7046 | 7291 | - | exsE | 100.0 | 97.2 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 9169 | 10626 | - | fha1 | 97.6 | 96.7 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 63562 | 64071 | - | fimT | 100.0 | 97.1 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 62950 | 63456 | - | fimU | 100.0 | 99.2 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_155 | 114 | 2888 | - | fimV | 100.0 | 98.3 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 18311 | 19153 | - | fleN | 100.0 | 98.9 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 37489 | 38961 | + | fleQ | 100.0 | 99.2 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 40287 | 41702 | + | fleR | 99.6 | 98.9 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 39074 | 40282 | + | fleS | 100.0 | 99.1 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_282 | 26490 | 27188 | + | flgA | 100.0 | 98.3 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 10675 | 11082 | + | flgB | 100.0 | 100.0 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 11088 | 11528 | + | flgC | 100.0 | 99.8 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 11541 | 12254 | + | flgD | 100.0 | 99.6 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 12282 | 13670 | + | flgE | 100.0 | 99.4 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 13887 | 14636 | + | flgF | 100.0 | 99.3 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 14683 | 15468 | + | flgG | 100.0 | 99.5 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 15514 | 16209 | + | flgH | 100.0 | 98.8 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 16221 | 17330 | + | flgI | 100.0 | 99.4 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 17341 | 18543 | + | flgJ | 100.0 | 99.1 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 18562 | 20610 | + | flgK | 99.7 | 86.7 | NP_249777 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_282 | 27333 | 27656 | + | flgM | 100.0 | 98.2 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_282 | 27711 | 28181 | + | flgN | 100.0 | 98.7 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 20665 | 22788 | - | flhA | 100.0 | 99.3 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 25633 | 26769 | - | flhB | 100.0 | 99.7 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 19292 | 20581 | - | flhF | 100.0 | 99.5 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 17571 | 18314 | - | fliA | 100.0 | 99.7 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 41949 | 42278 | + | fliE | 100.0 | 99.7 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 42301 | 44097 | + | fliF | 100.0 | 99.5 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 44103 | 45119 | + | fliG | 100.0 | 99.6 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 45121 | 45927 | + | fliH | 100.0 | 99.1 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 45917 | 47272 | + | fliI | 100.0 | 99.1 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 47286 | 47729 | + | fliJ | 100.0 | 99.1 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 31325 | 32608 | - | fliK | 100.0 | 98.2 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 30560 | 31081 | - | fliL | 100.0 | 100.0 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 29581 | 30552 | - | fliM | 100.0 | 99.9 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 29080 | 29553 | - | fliN | 100.0 | 98.5 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 28626 | 29078 | - | fliO | 100.0 | 98.9 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 27862 | 28629 | - | fliP | 100.0 | 99.3 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 27548 | 27817 | - | fliQ | 100.0 | 99.6 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 26772 | 27548 | - | fliR | 100.0 | 99.2 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_109 | 4635 | 6797 | - | fptA | 100.0 | 99.3 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 14220 | 14708 | + | hcp1 | 100.0 | 100.0 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 10994 | 12028 | + | hsiA1 | 100.0 | 99.8 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 12117 | 12635 | + | hsiB1/vipA | 100.0 | 99.8 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 12648 | 14144 | + | hsiC1/vipB | 100.0 | 99.5 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 14876 | 15721 | + | hsiE1 | 100.0 | 98.7 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 15723 | 16232 | + | hsiF1 | 100.0 | 98.8 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 16229 | 18088 | + | hsiG1 | 100.0 | 99.2 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 18052 | 19098 | + | hsiH1 | 100.0 | 98.8 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 7310 | 8644 | - | hsiJ1 | 100.0 | 99.6 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 2424 | 5732 | - | icmF1/tssM1 | 100.0 | 99.1 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_103 | 30435 | 31691 | + | lasA | 100.0 | 98.0 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| k141_92 | 96 | 1592 | - | lasB | 100.0 | 98.4 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 43245 | 43850 | - | lasI | 100.0 | 99.8 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 8660 | 9124 | - | lip1 | 100.0 | 100.0 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 8982 | 9200 | - | mbtH-like | 100.0 | 100.0 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 21205 | 22056 | - | motA | 100.0 | 98.2 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 20142 | 21185 | - | motB | 100.0 | 99.3 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 11836 | 12576 | - | motC | 100.0 | 99.2 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 10933 | 11823 | - | motD | 100.0 | 98.7 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 27622 | 28587 | - | motY | 100.0 | 99.3 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 37337 | 37921 | - | mucA | 100.0 | 99.1 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 36378 | 37328 | - | mucB | 100.0 | 99.0 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 35926 | 36381 | - | mucC | 100.0 | 99.6 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 34462 | 35886 | - | mucD | 100.0 | 98.9 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_40 | 10323 | 10592 | + | mucE | 100.0 | 98.5 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_266 | 169065 | 170417 | - | mucP | 100.0 | 99.3 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_118 | 6322 | 7752 | - | pchA | 100.0 | 99.0 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_118 | 7749 | 8054 | - | pchB | 100.0 | 99.7 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_118 | 8054 | 8809 | - | pchC | 100.0 | 99.3 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_118 | 8806 | 10449 | - | pchD | 100.0 | 99.2 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_118 | 11763 | 16079 | + | pchE | 100.0 | 98.9 | NP_252916 | (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_118 | 16076 | 20591 | + | pchF | 83.2 | 98.9 | NP_252915 | (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_216 | 957 | 2006 | - | pchG | 100.0 | 98.9 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_109 | 6889 | 8613 | - | pchI | 100.0 | 99.0 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_118 | 10679 | 11569 | + | pchR | 100.0 | 99.0 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 15250 | 15528 | - | pcr1 | 100.0 | 99.6 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 14892 | 15263 | - | pcr2 | 100.0 | 98.9 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 14530 | 14895 | - | pcr3 | 100.0 | 98.4 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 14196 | 14525 | - | pcr4 | 100.0 | 99.1 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 12079 | 14199 | - | pcrD | 100.0 | 99.0 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 11324 | 11620 | - | pcrG | 100.0 | 99.7 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 9915 | 10421 | - | pcrH | 100.0 | 99.2 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 11648 | 12082 | - | pcrR | 100.0 | 99.3 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 10430 | 11314 | - | pcrV | 100.0 | 99.0 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 184 | 672 | + | phzB1 | 100.0 | 98.6 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_206 | 244 | 678 | + | phzB1 | 89.0 | 89.7 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_64 | 4045 | 5262 | - | phzC1 | 100.0 | 99.4 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_64 | 3425 | 4048 | - | phzD1 | 100.0 | 99.2 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_64 | 1545 | 3428 | - | phzE1 | 100.0 | 99.3 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_64 | 695 | 1531 | - | phzF1 | 100.0 | 99.4 | NP_252904 | (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_64 | 25 | 669 | - | phzG1 | 100.0 | 99.7 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 20231 | 22063 | - | phzH | 100.0 | 99.1 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_33 | 63347 | 64351 | - | phzM | 100.0 | 99.1 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_109 | 297 | 1505 | + | phzS | 100.0 | 98.4 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 31553 | 33252 | + | pilB | 99.9 | 88.4 | NP_253216 | (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 56723 | 57148 | - | pilE | 100.0 | 99.5 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_92 | 95789 | 96547 | - | pilF | 100.0 | 98.8 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 32843 | 33250 | - | pilG | 100.0 | 100.0 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 32431 | 32796 | - | pilH | 100.0 | 99.7 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 31844 | 32380 | - | pilI | 100.0 | 99.8 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 29711 | 31759 | - | pilJ | 100.0 | 99.7 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 28775 | 29650 | - | pilK | 100.0 | 99.3 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_104 | 33497 | 34561 | - | pilM | 100.0 | 99.5 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_104 | 32901 | 33497 | - | pilN | 100.0 | 99.2 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_104 | 32281 | 32904 | - | pilO | 100.0 | 98.4 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_104 | 31760 | 32284 | - | pilP | 100.0 | 99.4 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_104 | 29562 | 31706 | - | pilQ | 100.0 | 97.2 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 65346 | 66683 | - | pilR | 100.0 | 99.5 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 66698 | 68290 | - | pilS | 100.0 | 99.2 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 45287 | 46321 | - | pilT | 100.0 | 99.4 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 43961 | 45109 | - | pilU | 100.0 | 99.8 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 62402 | 62959 | - | pilV | 100.0 | 99.3 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 61581 | 62405 | - | pilW | 100.0 | 98.9 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 60997 | 61584 | - | pilX | 100.0 | 99.3 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 57494 | 60985 | - | pilY1 | 99.6 | 91.6 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 57145 | 57492 | - | pilY2 | 100.0 | 99.1 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 38256 | 40448 | + | plcH | 100.0 | 99.6 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 8762 | 9934 | - | popB | 100.0 | 99.5 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 7863 | 8750 | - | popD | 100.0 | 97.3 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 15509 | 16375 | - | popN | 100.0 | 99.4 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 1009 | 1737 | - | pppA | 100.0 | 99.6 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 4106 | 4528 | - | pscB | 100.0 | 99.3 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 2304 | 4106 | - | pscC | 100.0 | 99.3 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 1004 | 2302 | - | pscD | 100.0 | 99.1 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 838 | 1041 | - | pscE | 100.0 | 98.0 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 578 | 835 | - | pscF | 100.0 | 99.6 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 228 | 575 | - | pscG | 100.0 | 99.1 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 18777 | 19185 | - | pscH | 94.7 | 94.6 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 18439 | 18777 | - | pscI | 100.0 | 99.7 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 17696 | 18442 | - | pscJ | 100.0 | 99.5 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 17067 | 17687 | - | pscK | 99.0 | 97.8 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 16444 | 17088 | - | pscL | 100.0 | 98.8 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 16566 | 17888 | + | pscN | 100.0 | 99.5 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 17885 | 18361 | + | pscO | 100.0 | 99.4 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 18349 | 19431 | + | pscP | 96.8 | 94.8 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 19428 | 20357 | + | pscQ | 100.0 | 99.1 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 20354 | 21007 | + | pscR | 100.0 | 99.4 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 21010 | 21276 | + | pscS | 100.0 | 100.0 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 21273 | 22061 | + | pscT | 100.0 | 99.1 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 22058 | 23107 | + | pscU | 100.0 | 98.9 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_107 | 5903 | 6841 | + | ptxR | 100.0 | 98.7 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 43130 | 44116 | + | pvcA | 100.0 | 99.4 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 44134 | 45009 | + | pvcB | 100.0 | 99.0 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_107 | 7585 | 9087 | - | pvcC | 100.0 | 98.9 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_107 | 6946 | 7592 | - | pvcD | 99.8 | 97.8 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 6065 | 7396 | - | pvdA | 100.0 | 83.3 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 19356 | 20183 | - | pvdF | 100.0 | 82.2 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 36321 | 37085 | - | pvdG | 100.0 | 98.6 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 9278 | 10687 | - | pvdH | 100.0 | 99.2 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 23219 | 36247 | - | pvdL | 100.0 | 99.1 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 15753 | 17099 | + | pvdM | 99.8 | 95.6 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 17122 | 18405 | + | pvdN | 100.0 | 99.2 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 18434 | 19288 | + | pvdO | 100.0 | 98.1 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 13893 | 15539 | - | pvdP | 99.8 | 85.0 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 3654 | 5942 | - | pvdQ | 100.0 | 99.3 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 37728 | 38291 | + | pvdS | 100.0 | 97.7 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_234 | 7314 | 8201 | + | rhlA | 100.0 | 99.7 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_234 | 8267 | 9547 | + | rhlB | 100.0 | 99.8 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 584 | 1561 | - | rhlC | 100.0 | 98.9 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| k141_236 | 23335 | 23940 | - | rhlI | 100.0 | 98.7 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 1747 | 2427 | - | tagF/pppB | 100.0 | 98.8 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 5767 | 6681 | + | tagQ | 100.0 | 98.0 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 3993 | 5705 | + | tagR | 100.0 | 99.4 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 2801 | 4000 | + | tagS | 100.0 | 99.3 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_58 | 2082 | 2801 | + | tagT | 100.0 | 98.3 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 4973 | 6889 | + | toxA | 100.0 | 98.8 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| k141_103 | 94 | 558 | - | tse1 | 100.0 | 99.8 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_39 | 34486 | 34962 | - | tse2 | 100.0 | 98.7 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_234 | 815 | 2041 | - | tse3 | 100.0 | 99.2 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 21846 | 23777 | + | vgrG1a | 100.0 | 99.2 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_62 | 14051 | 15328 | - | waaA | 100.0 | 99.2 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_62 | 40016 | 41083 | - | waaC | 100.0 | 99.2 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_62 | 41080 | 42117 | - | waaF | 100.0 | 99.5 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_62 | 38898 | 40019 | - | waaG | 100.0 | 99.2 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_62 | 38095 | 38901 | - | waaP | 100.0 | 99.3 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 34480 | 35352 | + | xcpA/pilD | 100.0 | 99.3 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 11129 | 11836 | - | xcpP | 100.0 | 99.7 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 9148 | 11124 | - | xcpQ | 100.0 | 99.0 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 12056 | 13564 | + | xcpR | 100.0 | 99.5 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 13564 | 14781 | + | xcpS | 100.0 | 99.3 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 14786 | 15232 | + | xcpT | 100.0 | 99.3 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 15239 | 15757 | + | xcpU | 100.0 | 98.5 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 15754 | 16143 | + | xcpV | 100.0 | 99.2 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 16140 | 16844 | + | xcpW | 98.7 | 98.3 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 16841 | 17842 | + | xcpX | 100.0 | 99.1 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 17839 | 18987 | + | xcpY | 100.0 | 98.3 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_120 | 18989 | 19513 | + | xcpZ | 100.0 | 99.2 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
129_pio
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_139 | 148046 | 149215 | - | alg44 | 100.0 | 99.7 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 149298 | 150782 | - | alg8 | 100.0 | 99.7 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 135581 | 137026 | - | algA | 100.0 | 99.5 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_97 | 49920 | 51269 | + | algB | 100.0 | 99.8 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_208 | 24088 | 25479 | - | algC | 100.0 | 99.9 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 150922 | 152232 | - | algD | 100.0 | 99.8 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 145136 | 146608 | - | algE | 100.0 | 99.7 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 137223 | 137873 | - | algF | 100.0 | 99.7 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 143484 | 145115 | - | algG | 100.0 | 99.7 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 139136 | 140698 | - | algI | 100.0 | 99.6 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 137946 | 139121 | - | algJ | 100.0 | 99.5 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 146605 | 148032 | - | algK | 100.0 | 99.7 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 140940 | 142043 | - | algL | 100.0 | 99.7 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_203 | 12266 | 13312 | + | algP/algR3 | 98.9 | 96.7 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_203 | 10967 | 11449 | + | algQ | 100.0 | 98.8 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_203 | 5077 | 5823 | + | algR | 100.0 | 99.3 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_240 | 37926 | 38507 | - | algU | 100.0 | 99.1 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_67 | 20263 | 21432 | - | algW | 100.0 | 99.1 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 142047 | 143471 | - | algX | 100.0 | 99.5 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_203 | 3996 | 5072 | + | algZ | 100.0 | 99.6 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_102 | 6197 | 7636 | + | aprA | 100.0 | 99.3 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 25368 | 32798 | + | chpA | 99.9 | 98.7 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 32791 | 33822 | + | chpB | 100.0 | 99.0 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 33819 | 34325 | + | chpC | 100.0 | 98.8 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 34333 | 35127 | + | chpD | 100.0 | 99.2 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 35203 | 35814 | + | chpE | 100.0 | 98.9 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 41829 | 44537 | + | clpV1 | 100.0 | 99.2 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 28692 | 30041 | - | dotU1 | 100.0 | 99.7 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_0 | 5661 | 7034 | - | exoT | 100.0 | 99.2 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 1069 | 3132 | + | exoU | 100.0 | 100.0 | AAC16023 | (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103] |
| k141_263 | 30033 | 31168 | + | exoY | 99.9 | 99.0 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 54495 | 55331 | + | exsA | 100.0 | 99.6 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 53784 | 54197 | + | exsB | 100.0 | 98.3 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 53084 | 53521 | + | exsC | 100.0 | 98.4 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 55429 | 56259 | + | exsD | 100.0 | 98.8 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 53530 | 53775 | + | exsE | 100.0 | 97.2 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 31907 | 33364 | - | fha1 | 97.6 | 96.7 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 63562 | 64071 | - | fimT | 100.0 | 97.1 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 62950 | 63456 | - | fimU | 100.0 | 99.2 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_88 | 176 | 2950 | - | fimV | 100.0 | 98.3 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 23206 | 24048 | - | fleN | 100.0 | 98.9 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 135789 | 137261 | + | fleQ | 100.0 | 99.2 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 138587 | 140002 | + | fleR | 99.6 | 98.9 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 137374 | 138582 | + | fleS | 100.0 | 99.1 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 28602 | 29300 | + | flgA | 100.0 | 98.3 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 108975 | 109382 | + | flgB | 100.0 | 100.0 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 109388 | 109828 | + | flgC | 100.0 | 99.8 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 109841 | 110554 | + | flgD | 100.0 | 99.6 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 110582 | 111970 | + | flgE | 100.0 | 99.4 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 112187 | 112936 | + | flgF | 100.0 | 99.3 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 112983 | 113768 | + | flgG | 100.0 | 99.5 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 113814 | 114509 | + | flgH | 100.0 | 98.8 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 114521 | 115630 | + | flgI | 100.0 | 99.4 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 115641 | 116843 | + | flgJ | 100.0 | 99.1 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 116862 | 118910 | + | flgK | 99.7 | 86.7 | NP_249777 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 29445 | 29768 | + | flgM | 100.0 | 98.2 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 29823 | 30293 | + | flgN | 100.0 | 98.7 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 25560 | 27683 | - | flhA | 100.0 | 99.3 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 30528 | 31664 | - | flhB | 100.0 | 99.7 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 24187 | 25476 | - | flhF | 100.0 | 99.5 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 22466 | 23209 | - | fliA | 100.0 | 99.7 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 140249 | 140578 | + | fliE | 100.0 | 99.7 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 140601 | 142397 | + | fliF | 100.0 | 99.5 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 142403 | 143419 | + | fliG | 100.0 | 99.6 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 143421 | 144227 | + | fliH | 100.0 | 99.1 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 144217 | 145572 | + | fliI | 100.0 | 99.1 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 145586 | 146029 | + | fliJ | 100.0 | 99.1 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 36220 | 37503 | - | fliK | 100.0 | 98.2 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 35455 | 35976 | - | fliL | 100.0 | 100.0 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 34476 | 35447 | - | fliM | 100.0 | 99.9 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 33975 | 34448 | - | fliN | 100.0 | 98.5 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 33521 | 33973 | - | fliO | 100.0 | 98.9 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 32757 | 33524 | - | fliP | 100.0 | 99.3 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 32443 | 32712 | - | fliQ | 100.0 | 99.6 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 31667 | 32443 | - | fliR | 100.0 | 99.2 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_50 | 4635 | 6797 | - | fptA | 100.0 | 99.3 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 36958 | 37446 | + | hcp1 | 100.0 | 100.0 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 33732 | 34766 | + | hsiA1 | 100.0 | 99.8 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 34855 | 35373 | + | hsiB1/vipA | 100.0 | 99.8 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 35386 | 36882 | + | hsiC1/vipB | 100.0 | 99.5 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 37614 | 38459 | + | hsiE1 | 100.0 | 98.7 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 38461 | 38970 | + | hsiF1 | 100.0 | 98.8 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 38967 | 40826 | + | hsiG1 | 100.0 | 99.2 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 40790 | 41836 | + | hsiH1 | 100.0 | 98.8 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 30048 | 31382 | - | hsiJ1 | 100.0 | 99.6 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 25162 | 28470 | - | icmF1/tssM1 | 100.0 | 99.1 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_99 | 88545 | 89801 | + | lasA | 100.0 | 98.0 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| k141_164 | 125567 | 127063 | + | lasB | 100.0 | 98.5 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 48140 | 48745 | - | lasI | 100.0 | 99.8 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 31398 | 31862 | - | lip1 | 100.0 | 100.0 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_118 | 8982 | 9200 | - | mbtH-like | 100.0 | 100.0 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_112 | 21265 | 22116 | - | motA | 100.0 | 98.2 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_112 | 20202 | 21245 | - | motB | 100.0 | 99.3 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 16731 | 17471 | - | motC | 100.0 | 99.2 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_96 | 15828 | 16718 | - | motD | 100.0 | 98.7 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_235 | 27727 | 28692 | - | motY | 100.0 | 99.3 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_240 | 37310 | 37894 | - | mucA | 100.0 | 99.1 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_240 | 36351 | 37301 | - | mucB | 100.0 | 99.0 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_240 | 35899 | 36354 | - | mucC | 100.0 | 99.6 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_240 | 34435 | 35859 | - | mucD | 100.0 | 98.9 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_146 | 10326 | 10595 | + | mucE | 100.0 | 98.5 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 26039 | 27391 | + | mucP | 100.0 | 99.3 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_196 | 15713 | 17143 | + | pchA | 100.0 | 99.0 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_196 | 15411 | 15716 | + | pchB | 100.0 | 99.7 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_196 | 14656 | 15411 | + | pchC | 100.0 | 99.3 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_196 | 13016 | 14659 | + | pchD | 100.0 | 99.2 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_196 | 7386 | 11702 | - | pchE | 100.0 | 98.9 | NP_252916 | (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_196 | 1960 | 7389 | - | pchF | 100.0 | 98.8 | NP_252915 | (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_196 | 914 | 1963 | - | pchG | 100.0 | 98.9 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_50 | 6889 | 8613 | - | pchI | 100.0 | 99.0 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_196 | 11896 | 12786 | - | pchR | 100.0 | 99.0 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 45293 | 45571 | + | pcr1 | 100.0 | 99.6 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 45558 | 45929 | + | pcr2 | 100.0 | 98.9 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 45926 | 46291 | + | pcr3 | 100.0 | 98.4 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 46296 | 46625 | + | pcr4 | 100.0 | 99.1 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 46622 | 48742 | + | pcrD | 100.0 | 99.0 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 49201 | 49497 | + | pcrG | 100.0 | 99.7 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 50400 | 50906 | + | pcrH | 100.0 | 99.2 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 48739 | 49173 | + | pcrR | 100.0 | 99.3 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 49507 | 50391 | + | pcrV | 100.0 | 99.0 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 184 | 672 | + | phzB1 | 100.0 | 98.6 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_169 | 244 | 678 | + | phzB1 | 89.0 | 89.7 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_61 | 4045 | 5262 | - | phzC1 | 100.0 | 99.3 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_61 | 3425 | 4048 | - | phzD1 | 100.0 | 99.2 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_61 | 1545 | 3428 | - | phzE1 | 100.0 | 99.2 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_61 | 695 | 1531 | - | phzF1 | 100.0 | 99.5 | NP_252904 | (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_61 | 25 | 669 | - | phzG1 | 100.0 | 99.8 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 663 | 2495 | + | phzH | 100.0 | 99.1 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_100 | 63161 | 64165 | - | phzM | 100.0 | 99.1 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_50 | 297 | 1505 | + | phzS | 100.0 | 98.4 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_223 | 69221 | 70920 | + | pilB | 99.9 | 88.4 | NP_253216 | (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 56723 | 57148 | - | pilE | 100.0 | 99.5 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_164 | 30773 | 31531 | + | pilF | 100.0 | 98.8 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 20881 | 21288 | + | pilG | 100.0 | 100.0 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 21335 | 21700 | + | pilH | 100.0 | 99.7 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 21751 | 22287 | + | pilI | 100.0 | 99.8 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 22372 | 24420 | + | pilJ | 100.0 | 99.7 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 24481 | 25356 | + | pilK | 100.0 | 99.3 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 36678 | 37742 | - | pilM | 100.0 | 99.5 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 36082 | 36678 | - | pilN | 100.0 | 99.2 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 35462 | 36085 | - | pilO | 100.0 | 98.4 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 34941 | 35465 | - | pilP | 100.0 | 99.4 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 32743 | 34887 | - | pilQ | 100.0 | 97.2 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 65346 | 66683 | - | pilR | 100.0 | 99.5 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 66698 | 68290 | - | pilS | 100.0 | 99.2 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 7810 | 8844 | + | pilT | 100.0 | 99.4 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 9022 | 10170 | + | pilU | 100.0 | 99.8 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 62402 | 62959 | - | pilV | 100.0 | 99.3 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 61581 | 62405 | - | pilW | 100.0 | 98.9 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 60997 | 61584 | - | pilX | 100.0 | 99.3 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 57494 | 60985 | - | pilY1 | 99.6 | 91.6 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 57145 | 57492 | - | pilY2 | 100.0 | 99.1 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_136 | 38204 | 40396 | + | plcH | 100.0 | 99.6 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 50887 | 52059 | + | popB | 100.0 | 99.5 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 52071 | 52958 | + | popD | 100.0 | 97.3 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 44446 | 45312 | + | popN | 100.0 | 99.4 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 20641 | 23739 | - | ppkA | 100.0 | 99.5 | NP_248764 | (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 23747 | 24475 | - | pppA | 100.0 | 99.6 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 56293 | 56715 | + | pscB | 100.0 | 99.3 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 56715 | 58517 | + | pscC | 100.0 | 99.3 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 58519 | 59817 | + | pscD | 100.0 | 99.1 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 59780 | 59983 | + | pscE | 100.0 | 98.0 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 59986 | 60243 | + | pscF | 100.0 | 99.6 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 60246 | 60593 | + | pscG | 100.0 | 99.1 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 60590 | 61021 | + | pscH | 100.0 | 99.3 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 61021 | 61359 | + | pscI | 100.0 | 99.7 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 61356 | 62102 | + | pscJ | 100.0 | 99.5 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 62111 | 62731 | + | pscK | 99.0 | 97.8 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 62710 | 63354 | + | pscL | 100.0 | 98.8 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 42933 | 44255 | - | pscN | 100.0 | 99.5 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 42460 | 42936 | - | pscO | 100.0 | 99.4 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 41390 | 42472 | - | pscP | 96.8 | 94.8 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 40464 | 41393 | - | pscQ | 100.0 | 99.1 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 39814 | 40467 | - | pscR | 100.0 | 99.4 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 39545 | 39811 | - | pscS | 100.0 | 100.0 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 38760 | 39548 | - | pscT | 100.0 | 99.1 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 37714 | 38763 | - | pscU | 100.0 | 98.9 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_202 | 5515 | 6453 | - | ptxR | 100.0 | 98.7 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_202 | 1283 | 2269 | + | pvcA | 100.0 | 99.4 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_202 | 2287 | 3162 | + | pvcB | 100.0 | 99.0 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_202 | 3269 | 4771 | + | pvcC | 100.0 | 98.9 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_202 | 4764 | 5410 | + | pvcD | 99.8 | 97.8 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_264 | 11616 | 12947 | - | pvdA | 100.0 | 83.3 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_264 | 24907 | 25734 | - | pvdF | 100.0 | 82.2 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_257 | 99896 | 100660 | - | pvdG | 100.0 | 98.6 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_118 | 9278 | 10687 | - | pvdH | 100.0 | 99.2 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_257 | 86794 | 99822 | - | pvdL | 100.0 | 99.1 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_264 | 21304 | 22650 | + | pvdM | 99.8 | 95.6 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_264 | 22673 | 23956 | + | pvdN | 100.0 | 99.2 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_264 | 23985 | 24839 | + | pvdO | 100.0 | 98.1 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_264 | 19444 | 21090 | - | pvdP | 99.8 | 85.0 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_264 | 9205 | 11493 | - | pvdQ | 100.0 | 99.3 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_257 | 101303 | 101866 | + | pvdS | 100.0 | 97.7 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_226 | 2384 | 3271 | - | rhlA | 100.0 | 99.7 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_226 | 1038 | 2318 | - | rhlB | 100.0 | 99.8 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_227 | 584 | 1561 | - | rhlC | 100.0 | 98.9 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 24485 | 25165 | - | tagF/pppB | 100.0 | 98.8 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 16045 | 16959 | - | tagQ | 100.0 | 98.0 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 17021 | 18733 | - | tagR | 100.0 | 99.4 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 18726 | 19925 | - | tagS | 100.0 | 99.3 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 19925 | 20644 | - | tagT | 100.0 | 98.3 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 4973 | 6889 | + | toxA | 100.0 | 98.8 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| k141_99 | 58204 | 58668 | - | tse1 | 100.0 | 99.8 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_40 | 34540 | 35016 | - | tse2 | 100.0 | 98.7 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_226 | 8544 | 9770 | + | tse3 | 100.0 | 99.2 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 44584 | 46515 | + | vgrG1a | 100.0 | 99.2 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_199 | 49236 | 51461 | + | vgrG1b | 100.0 | 98.7 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_112 | 66074 | 67351 | - | waaA | 100.0 | 99.2 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_112 | 92039 | 93106 | - | waaC | 100.0 | 99.2 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_112 | 93103 | 94140 | - | waaF | 100.0 | 99.5 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_112 | 90921 | 92042 | - | waaG | 100.0 | 99.2 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_112 | 90118 | 90924 | - | waaP | 100.0 | 99.3 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_223 | 72148 | 73020 | + | xcpA/pilD | 100.0 | 99.3 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 7929 | 8636 | + | xcpP | 100.0 | 99.7 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 8641 | 10617 | + | xcpQ | 100.0 | 99.0 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 6201 | 7709 | - | xcpR | 100.0 | 99.5 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 4984 | 6201 | - | xcpS | 100.0 | 99.3 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 4533 | 4979 | - | xcpT | 100.0 | 99.3 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 4008 | 4526 | - | xcpU | 100.0 | 98.5 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 3622 | 4011 | - | xcpV | 100.0 | 99.2 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 2921 | 3625 | - | xcpW | 98.7 | 98.3 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 1923 | 2924 | - | xcpX | 100.0 | 99.1 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 778 | 1926 | - | xcpY | 100.0 | 98.3 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_195 | 252 | 776 | - | xcpZ | 100.0 | 99.2 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
159_pio
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_121 | 49171 | 50340 | + | alg44 | 100.0 | 99.7 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 47604 | 49088 | + | alg8 | 100.0 | 99.7 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 61360 | 62805 | + | algA | 100.0 | 99.5 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_268 | 1464 | 2813 | + | algB | 100.0 | 99.8 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_257 | 1054 | 2445 | - | algC | 100.0 | 99.9 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 46154 | 47464 | + | algD | 100.0 | 99.8 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 51778 | 53250 | + | algE | 100.0 | 99.7 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 60513 | 61163 | + | algF | 100.0 | 99.7 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 53271 | 54902 | + | algG | 100.0 | 99.7 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 57688 | 59250 | + | algI | 100.0 | 99.6 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 59265 | 60440 | + | algJ | 100.0 | 99.5 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 50354 | 51781 | + | algK | 100.0 | 99.7 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 56343 | 57446 | + | algL | 100.0 | 99.7 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_305 | 12266 | 13312 | + | algP/algR3 | 98.9 | 96.7 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_305 | 10967 | 11449 | + | algQ | 100.0 | 98.8 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_305 | 5077 | 5823 | + | algR | 100.0 | 99.3 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_165 | 23235 | 23816 | - | algU | 100.0 | 99.1 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_7 | 17663 | 18832 | + | algW | 100.0 | 99.1 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 54915 | 56339 | + | algX | 100.0 | 99.5 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_305 | 3996 | 5072 | + | algZ | 100.0 | 99.6 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_122 | 5233 | 6672 | - | aprA | 100.0 | 99.3 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 41279 | 48709 | - | chpA | 99.9 | 98.7 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 40255 | 41286 | - | chpB | 100.0 | 99.0 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 39752 | 40258 | - | chpC | 100.0 | 98.8 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 38950 | 39744 | - | chpD | 100.0 | 99.2 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 38263 | 38874 | - | chpE | 100.0 | 98.9 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 143901 | 146609 | - | clpV1 | 100.0 | 99.2 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 158397 | 159746 | + | dotU1 | 100.0 | 99.7 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_206 | 5638 | 7011 | - | exoT | 100.0 | 99.2 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| k141_39 | 1069 | 3132 | + | exoU | 100.0 | 100.0 | AAC16023 | (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103] |
| k141_89 | 30033 | 31168 | + | exoY | 99.9 | 99.0 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 10664 | 11500 | + | exsA | 100.0 | 99.6 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 9953 | 10366 | + | exsB | 100.0 | 98.3 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 9253 | 9690 | + | exsC | 100.0 | 98.4 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 11598 | 12428 | + | exsD | 100.0 | 98.8 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 9699 | 9944 | + | exsE | 100.0 | 97.2 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 155074 | 156531 | + | fha1 | 97.6 | 96.7 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 15730 | 16239 | + | fimT | 100.0 | 97.1 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 16345 | 16851 | + | fimU | 100.0 | 99.2 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_77 | 13810 | 16584 | + | fimV | 100.0 | 98.3 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 28595 | 29437 | - | fleN | 100.0 | 98.9 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 32734 | 34206 | - | fleQ | 100.0 | 99.2 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 29993 | 31408 | - | fleR | 99.6 | 98.9 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 31413 | 32621 | - | fleS | 100.0 | 99.1 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 17735 | 18433 | - | flgA | 100.0 | 98.3 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 60613 | 61020 | - | flgB | 100.0 | 100.0 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 60167 | 60607 | - | flgC | 100.0 | 99.8 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 59441 | 60154 | - | flgD | 100.0 | 99.6 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 58025 | 59413 | - | flgE | 100.0 | 99.4 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 57059 | 57808 | - | flgF | 100.0 | 99.3 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 56227 | 57012 | - | flgG | 100.0 | 99.5 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 55486 | 56181 | - | flgH | 100.0 | 98.8 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 54365 | 55474 | - | flgI | 100.0 | 99.4 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 53152 | 54354 | - | flgJ | 100.0 | 99.1 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 51085 | 53133 | - | flgK | 99.7 | 86.7 | NP_249777 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 17267 | 17590 | - | flgM | 100.0 | 98.2 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_233 | 16742 | 17212 | - | flgN | 100.0 | 98.7 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 30949 | 33072 | - | flhA | 100.0 | 99.3 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 35917 | 37053 | - | flhB | 100.0 | 99.7 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 29576 | 30865 | - | flhF | 100.0 | 99.5 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 27855 | 28598 | - | fliA | 100.0 | 99.7 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 29417 | 29746 | - | fliE | 100.0 | 99.7 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 27598 | 29394 | - | fliF | 100.0 | 99.5 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 26576 | 27592 | - | fliG | 100.0 | 99.6 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 25768 | 26574 | - | fliH | 100.0 | 99.1 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 24423 | 25778 | - | fliI | 100.0 | 99.1 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 23966 | 24409 | - | fliJ | 100.0 | 99.1 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 41609 | 42892 | - | fliK | 100.0 | 98.2 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 40844 | 41365 | - | fliL | 100.0 | 100.0 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 39865 | 40836 | - | fliM | 100.0 | 99.9 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 39364 | 39837 | - | fliN | 100.0 | 98.5 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 38910 | 39362 | - | fliO | 100.0 | 98.9 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 38146 | 38913 | - | fliP | 100.0 | 99.3 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 37832 | 38101 | - | fliQ | 100.0 | 99.6 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 37056 | 37832 | - | fliR | 100.0 | 99.2 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_100 | 4635 | 6797 | - | fptA | 100.0 | 99.3 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 150992 | 151480 | - | hcp1 | 100.0 | 100.0 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 153672 | 154706 | - | hsiA1 | 100.0 | 99.8 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 153065 | 153583 | - | hsiB1/vipA | 100.0 | 99.8 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 151556 | 153052 | - | hsiC1/vipB | 100.0 | 99.5 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 149979 | 150824 | - | hsiE1 | 100.0 | 98.7 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 149468 | 149977 | - | hsiF1 | 100.0 | 98.8 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 147612 | 149471 | - | hsiG1 | 100.0 | 99.2 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 146602 | 147648 | - | hsiH1 | 100.0 | 98.8 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 157056 | 158390 | + | hsiJ1 | 100.0 | 99.6 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 159968 | 163276 | + | icmF1/tssM1 | 100.0 | 99.1 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_261 | 18524 | 19780 | + | lasA | 100.0 | 98.0 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| k141_88 | 60 | 1556 | - | lasB | 100.0 | 98.5 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 53529 | 54134 | - | lasI | 100.0 | 99.8 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 156576 | 157040 | + | lip1 | 100.0 | 100.0 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_137 | 8982 | 9200 | - | mbtH-like | 100.0 | 100.0 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 79130 | 79981 | + | motA | 100.0 | 98.2 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 80001 | 81044 | + | motB | 100.0 | 99.3 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 22120 | 22860 | - | motC | 100.0 | 99.2 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_255 | 21217 | 22107 | - | motD | 100.0 | 98.7 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 29323 | 30288 | - | motY | 100.0 | 99.3 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_165 | 22619 | 23203 | - | mucA | 100.0 | 99.1 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_165 | 21660 | 22610 | - | mucB | 100.0 | 99.0 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_165 | 21208 | 21663 | - | mucC | 100.0 | 99.6 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_165 | 19744 | 21168 | - | mucD | 100.0 | 98.9 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_61 | 10441 | 10710 | + | mucE | 100.0 | 98.5 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 171224 | 172576 | - | mucP | 100.0 | 99.3 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_272 | 6322 | 7752 | - | pchA | 100.0 | 99.0 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_272 | 7749 | 8054 | - | pchB | 100.0 | 99.7 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_272 | 8054 | 8809 | - | pchC | 100.0 | 99.3 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_272 | 8806 | 10449 | - | pchD | 100.0 | 99.2 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_272 | 11763 | 15714 | + | pchE | 91.5 | 98.5 | NP_252916 | (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_97 | 2047 | 7476 | - | pchF | 100.0 | 98.8 | NP_252915 | (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_97 | 1001 | 2050 | - | pchG | 100.0 | 98.9 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_100 | 6889 | 8613 | - | pchI | 100.0 | 99.0 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_272 | 10679 | 11569 | + | pchR | 100.0 | 99.0 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 1462 | 1740 | + | pcr1 | 100.0 | 99.6 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 1727 | 2098 | + | pcr2 | 100.0 | 98.9 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 2095 | 2460 | + | pcr3 | 100.0 | 98.4 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 2465 | 2794 | + | pcr4 | 100.0 | 99.1 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 2791 | 4911 | + | pcrD | 100.0 | 99.0 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 5370 | 5666 | + | pcrG | 100.0 | 99.7 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 6569 | 7075 | + | pcrH | 100.0 | 99.2 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 4908 | 5342 | + | pcrR | 100.0 | 99.3 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 5676 | 6560 | + | pcrV | 100.0 | 99.0 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_184 | 184 | 672 | + | phzB1 | 100.0 | 98.6 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_185 | 244 | 678 | + | phzB1 | 89.0 | 89.7 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_87 | 4045 | 5262 | - | phzC1 | 100.0 | 99.3 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_87 | 3425 | 4048 | - | phzD1 | 100.0 | 99.2 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_87 | 1545 | 3428 | - | phzE1 | 100.0 | 99.2 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_87 | 695 | 1531 | - | phzF1 | 100.0 | 99.4 | NP_252904 | (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_87 | 25 | 669 | - | phzG1 | 100.0 | 99.8 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_219 | 20353 | 22185 | - | phzH | 100.0 | 99.1 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 11197 | 12201 | - | phzM | 100.0 | 99.1 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_100 | 297 | 1505 | + | phzS | 100.0 | 98.4 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 31514 | 33213 | + | pilB | 99.9 | 88.4 | NP_253216 | (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 22653 | 23078 | + | pilE | 100.0 | 99.5 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_88 | 95592 | 96350 | - | pilF | 100.0 | 98.8 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 52789 | 53196 | - | pilG | 100.0 | 100.0 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 52377 | 52742 | - | pilH | 100.0 | 99.7 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 51790 | 52326 | - | pilI | 100.0 | 99.8 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 49657 | 51705 | - | pilJ | 100.0 | 99.7 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 48721 | 49596 | - | pilK | 100.0 | 99.3 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_80 | 6929 | 7993 | - | pilM | 100.0 | 99.5 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_80 | 6333 | 6929 | - | pilN | 100.0 | 99.2 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_80 | 5713 | 6336 | - | pilO | 100.0 | 98.4 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_80 | 5192 | 5716 | - | pilP | 100.0 | 99.4 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_80 | 2994 | 5138 | - | pilQ | 100.0 | 97.2 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 13118 | 14455 | + | pilR | 100.0 | 99.5 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 11511 | 13103 | + | pilS | 100.0 | 99.2 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 65233 | 66267 | - | pilT | 100.0 | 99.4 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 63907 | 65055 | - | pilU | 100.0 | 99.8 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 16842 | 17399 | + | pilV | 100.0 | 99.3 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 17396 | 18220 | + | pilW | 100.0 | 98.9 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 18217 | 18804 | + | pilX | 100.0 | 99.3 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 18816 | 22307 | + | pilY1 | 99.6 | 91.6 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_218 | 22309 | 22656 | + | pilY2 | 100.0 | 99.1 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 4105 | 6297 | - | plcH | 100.0 | 99.6 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 7056 | 8228 | + | popB | 100.0 | 99.5 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 8240 | 9127 | + | popD | 100.0 | 97.3 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 615 | 1481 | + | popN | 100.0 | 99.4 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_0 | 966 | 1694 | - | pppA | 100.0 | 99.6 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 12462 | 12884 | + | pscB | 100.0 | 99.3 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 12884 | 14686 | + | pscC | 100.0 | 99.3 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 14688 | 15986 | + | pscD | 100.0 | 99.1 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 15949 | 16152 | + | pscE | 100.0 | 98.0 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 16155 | 16412 | + | pscF | 100.0 | 99.6 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 16415 | 16762 | + | pscG | 100.0 | 99.1 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 16759 | 17190 | + | pscH | 100.0 | 99.3 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 17190 | 17528 | + | pscI | 100.0 | 99.7 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 17525 | 18271 | + | pscJ | 100.0 | 99.5 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 18280 | 18900 | + | pscK | 99.0 | 97.8 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 18879 | 19523 | + | pscL | 100.0 | 98.8 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 1108 | 1584 | + | pscO | 100.0 | 99.4 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 1572 | 2654 | + | pscP | 96.8 | 94.8 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 2651 | 3580 | + | pscQ | 100.0 | 99.1 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 3577 | 4230 | + | pscR | 100.0 | 99.4 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 4233 | 4499 | + | pscS | 100.0 | 100.0 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 4496 | 5284 | + | pscT | 100.0 | 99.1 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 5281 | 6330 | + | pscU | 100.0 | 98.9 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_27 | 2342 | 3280 | - | ptxR | 100.0 | 98.7 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 904 | 1890 | - | pvcA | 100.0 | 99.4 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 11 | 886 | - | pvcB | 100.0 | 98.4 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_27 | 96 | 1598 | + | pvcC | 100.0 | 98.9 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_27 | 1591 | 2237 | + | pvcD | 99.8 | 97.8 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 21092 | 22423 | + | pvdA | 100.0 | 83.3 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 8305 | 9132 | + | pvdF | 100.0 | 82.2 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_247 | 22028 | 22792 | - | pvdG | 100.0 | 98.6 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_137 | 9278 | 10687 | - | pvdH | 100.0 | 99.2 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_247 | 8926 | 21954 | - | pvdL | 100.0 | 99.1 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 11389 | 12735 | - | pvdM | 99.8 | 95.6 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 10083 | 11366 | - | pvdN | 100.0 | 99.2 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 9200 | 10054 | - | pvdO | 100.0 | 98.1 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 12949 | 14595 | + | pvdP | 99.8 | 85.0 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_198 | 22546 | 24834 | + | pvdQ | 100.0 | 99.3 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_247 | 23435 | 23998 | + | pvdS | 100.0 | 97.7 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 2460 | 3347 | - | rhlA | 100.0 | 99.7 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 1114 | 2394 | - | rhlB | 100.0 | 99.8 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_119 | 17547 | 18524 | + | rhlC | 100.0 | 98.9 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| k141_260 | 231 | 836 | + | rhlI | 100.0 | 98.7 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_0 | 1704 | 2384 | - | tagF/pppB | 100.0 | 98.8 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_219 | 5889 | 6803 | + | tagQ | 100.0 | 98.0 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_219 | 4115 | 5827 | + | tagR | 100.0 | 99.4 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_219 | 2923 | 4122 | + | tagS | 100.0 | 99.3 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_219 | 2204 | 2923 | + | tagT | 100.0 | 98.3 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_186 | 4973 | 6889 | + | toxA | 100.0 | 98.8 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| k141_147 | 11495 | 11959 | + | tse1 | 100.0 | 99.8 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_34 | 16101 | 16577 | - | tse2 | 100.0 | 98.7 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 8620 | 9846 | + | tse3 | 100.0 | 99.2 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 141923 | 143854 | - | vgrG1a | 100.0 | 99.2 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_258 | 136977 | 139202 | - | vgrG1b | 100.0 | 98.7 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 33895 | 35172 | + | waaA | 100.0 | 99.2 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 8140 | 9207 | + | waaC | 100.0 | 99.2 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 7106 | 8143 | + | waaF | 100.0 | 99.5 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 9204 | 10325 | + | waaG | 100.0 | 99.2 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 10322 | 11128 | + | waaP | 100.0 | 99.3 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_23 | 34441 | 35313 | + | xcpA/pilD | 100.0 | 99.3 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 87928 | 88635 | + | xcpP | 100.0 | 99.7 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 88640 | 90616 | + | xcpQ | 100.0 | 99.0 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 86200 | 87708 | - | xcpR | 100.0 | 99.5 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 84983 | 86200 | - | xcpS | 100.0 | 99.3 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 84532 | 84978 | - | xcpT | 100.0 | 99.3 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 84007 | 84525 | - | xcpU | 100.0 | 98.5 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 83621 | 84010 | - | xcpV | 100.0 | 99.2 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 82920 | 83624 | - | xcpW | 98.7 | 98.3 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 81922 | 82923 | - | xcpX | 100.0 | 99.1 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 80777 | 81925 | - | xcpY | 100.0 | 98.3 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 80251 | 80775 | - | xcpZ | 100.0 | 99.2 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
165_pio
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_286 | 47544 | 48713 | + | alg44 | 100.0 | 99.7 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 45977 | 47461 | + | alg8 | 100.0 | 99.7 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 59733 | 61178 | + | algA | 100.0 | 99.5 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_171 | 64945 | 66294 | - | algB | 100.0 | 99.8 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_207 | 104624 | 106015 | + | algC | 100.0 | 99.9 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 44527 | 45837 | + | algD | 100.0 | 99.8 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 50151 | 51623 | + | algE | 100.0 | 99.7 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 58886 | 59536 | + | algF | 100.0 | 99.7 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 51644 | 53275 | + | algG | 100.0 | 99.7 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 56061 | 57623 | + | algI | 100.0 | 99.6 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 57638 | 58813 | + | algJ | 100.0 | 99.5 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 48727 | 50154 | + | algK | 100.0 | 99.7 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 54716 | 55819 | + | algL | 100.0 | 99.7 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_282 | 12266 | 13312 | + | algP/algR3 | 98.9 | 96.7 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_282 | 10967 | 11449 | + | algQ | 100.0 | 98.8 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_282 | 5077 | 5823 | + | algR | 100.0 | 99.3 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_172 | 39005 | 39586 | - | algU | 100.0 | 99.1 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_46 | 17660 | 18829 | + | algW | 100.0 | 99.1 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 53288 | 54712 | + | algX | 100.0 | 99.5 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_282 | 3996 | 5072 | + | algZ | 100.0 | 99.6 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_260 | 65520 | 66959 | - | aprA | 100.0 | 99.3 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 31285 | 38715 | - | chpA | 99.9 | 98.7 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 30261 | 31292 | - | chpB | 100.0 | 99.0 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 29758 | 30264 | - | chpC | 100.0 | 98.8 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 28956 | 29750 | - | chpD | 100.0 | 99.2 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 28269 | 28880 | - | chpE | 100.0 | 98.9 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 41835 | 44543 | + | clpV1 | 100.0 | 99.2 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 28698 | 30047 | - | dotU1 | 100.0 | 99.7 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_271 | 5558 | 6931 | - | exoT | 100.0 | 99.2 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| k141_18 | 95242 | 97305 | - | exoU | 100.0 | 100.0 | AAC16023 | (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103] |
| k141_89 | 29955 | 31090 | + | exoY | 99.9 | 99.0 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 26720 | 27556 | + | exsA | 100.0 | 99.6 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 26009 | 26422 | + | exsB | 100.0 | 98.3 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 25309 | 25746 | + | exsC | 100.0 | 98.4 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 27654 | 28484 | + | exsD | 100.0 | 98.8 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 25755 | 26000 | + | exsE | 100.0 | 97.2 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 31913 | 33370 | - | fha1 | 97.6 | 96.7 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 25095 | 25604 | - | fimT | 100.0 | 97.1 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 24483 | 24989 | - | fimU | 100.0 | 99.2 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_209 | 5882 | 8656 | + | fimV | 100.0 | 98.3 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 48574 | 49416 | - | fleN | 100.0 | 98.9 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 32734 | 34206 | - | fleQ | 100.0 | 99.2 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 29993 | 31408 | - | fleR | 99.6 | 98.9 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 31413 | 32621 | - | fleS | 100.0 | 99.1 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_184 | 44654 | 45352 | + | flgA | 100.0 | 98.3 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 60613 | 61020 | - | flgB | 100.0 | 100.0 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 60167 | 60607 | - | flgC | 100.0 | 99.8 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 59441 | 60154 | - | flgD | 100.0 | 99.6 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 58025 | 59413 | - | flgE | 100.0 | 99.4 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 57059 | 57808 | - | flgF | 100.0 | 99.3 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 56227 | 57012 | - | flgG | 100.0 | 99.5 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 55486 | 56181 | - | flgH | 100.0 | 98.8 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 54365 | 55474 | - | flgI | 100.0 | 99.4 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 53152 | 54354 | - | flgJ | 100.0 | 99.1 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 51085 | 53133 | - | flgK | 99.7 | 86.7 | NP_249777 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_184 | 45497 | 45820 | + | flgM | 100.0 | 98.2 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_184 | 45875 | 46345 | + | flgN | 100.0 | 98.7 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 50928 | 53051 | - | flhA | 100.0 | 99.3 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 55896 | 57032 | - | flhB | 100.0 | 99.7 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 49555 | 50844 | - | flhF | 100.0 | 99.5 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 47834 | 48577 | - | fliA | 100.0 | 99.7 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 29417 | 29746 | - | fliE | 100.0 | 99.7 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 27598 | 29394 | - | fliF | 100.0 | 99.5 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 26576 | 27592 | - | fliG | 100.0 | 99.6 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 25768 | 26574 | - | fliH | 100.0 | 99.1 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 24423 | 25778 | - | fliI | 100.0 | 99.1 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_295 | 23966 | 24409 | - | fliJ | 100.0 | 99.1 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 61588 | 62871 | - | fliK | 100.0 | 98.2 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 60823 | 61344 | - | fliL | 100.0 | 100.0 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 59844 | 60815 | - | fliM | 100.0 | 99.9 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 59343 | 59816 | - | fliN | 100.0 | 98.5 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 58889 | 59341 | - | fliO | 100.0 | 98.9 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 58125 | 58892 | - | fliP | 100.0 | 99.3 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 57811 | 58080 | - | fliQ | 100.0 | 99.6 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 57035 | 57811 | - | fliR | 100.0 | 99.2 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_45 | 4635 | 6797 | - | fptA | 100.0 | 99.3 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 36964 | 37452 | + | hcp1 | 100.0 | 100.0 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 33738 | 34772 | + | hsiA1 | 100.0 | 99.8 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 34861 | 35379 | + | hsiB1/vipA | 100.0 | 99.8 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 35392 | 36888 | + | hsiC1/vipB | 100.0 | 99.5 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 37620 | 38465 | + | hsiE1 | 100.0 | 98.7 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 38467 | 38976 | + | hsiF1 | 100.0 | 98.8 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 38973 | 40832 | + | hsiG1 | 100.0 | 99.2 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 40796 | 41842 | + | hsiH1 | 100.0 | 98.8 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 30054 | 31388 | - | hsiJ1 | 100.0 | 99.6 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 25168 | 28476 | - | icmF1/tssM1 | 100.0 | 99.1 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_170 | 145 | 1401 | - | lasA | 100.0 | 98.0 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| k141_44 | 44265 | 45761 | + | lasB | 100.0 | 98.5 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 73508 | 74113 | - | lasI | 100.0 | 99.8 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 31404 | 31868 | - | lip1 | 100.0 | 100.0 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_141 | 8982 | 9200 | - | mbtH-like | 100.0 | 100.0 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_290 | 78990 | 79841 | + | motA | 100.0 | 98.2 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_290 | 79861 | 80904 | + | motB | 100.0 | 99.3 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 42099 | 42839 | - | motC | 100.0 | 99.2 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 41196 | 42086 | - | motD | 100.0 | 98.7 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_286 | 27622 | 28587 | - | motY | 100.0 | 99.3 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_172 | 38389 | 38973 | - | mucA | 100.0 | 99.1 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_172 | 37430 | 38380 | - | mucB | 100.0 | 99.0 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_172 | 36978 | 37433 | - | mucC | 100.0 | 99.6 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_172 | 35514 | 36938 | - | mucD | 100.0 | 98.9 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_73 | 10283 | 10552 | + | mucE | 100.0 | 98.5 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_251 | 25992 | 27344 | + | mucP | 100.0 | 99.3 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 15796 | 17226 | + | pchA | 100.0 | 99.0 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 15494 | 15799 | + | pchB | 100.0 | 99.7 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 14739 | 15494 | + | pchC | 100.0 | 99.3 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 13099 | 14742 | + | pchD | 100.0 | 99.2 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 7469 | 11785 | - | pchE | 100.0 | 98.9 | NP_252916 | (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 2043 | 7472 | - | pchF | 100.0 | 98.8 | NP_252915 | (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 997 | 2046 | - | pchG | 100.0 | 98.9 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_45 | 6889 | 8613 | - | pchI | 100.0 | 99.0 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_289 | 11979 | 12869 | - | pchR | 100.0 | 99.0 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 17518 | 17796 | + | pcr1 | 100.0 | 99.6 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 17783 | 18154 | + | pcr2 | 100.0 | 98.9 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 18151 | 18516 | + | pcr3 | 100.0 | 98.4 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 18521 | 18850 | + | pcr4 | 100.0 | 99.1 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 18847 | 20967 | + | pcrD | 100.0 | 99.0 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 21426 | 21722 | + | pcrG | 100.0 | 99.7 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 22625 | 23131 | + | pcrH | 100.0 | 99.2 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 20964 | 21398 | + | pcrR | 100.0 | 99.3 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 21732 | 22616 | + | pcrV | 100.0 | 99.0 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_204 | 184 | 672 | + | phzB1 | 100.0 | 98.6 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 244 | 678 | + | phzB1 | 89.0 | 89.7 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 4045 | 5262 | - | phzC1 | 100.0 | 99.3 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 3425 | 4048 | - | phzD1 | 100.0 | 99.0 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 1545 | 3428 | - | phzE1 | 100.0 | 99.2 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 695 | 1531 | - | phzF1 | 100.0 | 99.6 | NP_252904 | (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_65 | 25 | 669 | - | phzG1 | 100.0 | 99.5 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 669 | 2501 | + | phzH | 100.0 | 99.1 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_123 | 8524 | 9528 | - | phzM | 100.0 | 99.1 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_45 | 297 | 1505 | + | phzS | 100.0 | 98.4 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_304 | 24044 | 25743 | - | pilB | 99.9 | 88.4 | NP_253216 | (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 18256 | 18681 | - | pilE | 100.0 | 99.5 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 49982 | 50740 | - | pilF | 100.0 | 98.8 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 42795 | 43202 | - | pilG | 100.0 | 100.0 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 42383 | 42748 | - | pilH | 100.0 | 99.7 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 41796 | 42332 | - | pilI | 100.0 | 99.8 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 39663 | 41711 | - | pilJ | 100.0 | 99.7 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 38727 | 39602 | - | pilK | 100.0 | 99.3 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_268 | 33501 | 34565 | - | pilM | 100.0 | 99.5 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_268 | 32905 | 33501 | - | pilN | 100.0 | 99.2 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_268 | 32285 | 32908 | - | pilO | 100.0 | 98.4 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_268 | 31764 | 32288 | - | pilP | 100.0 | 99.4 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_268 | 29566 | 31710 | - | pilQ | 100.0 | 97.2 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 26879 | 28216 | - | pilR | 100.0 | 99.5 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 28231 | 29823 | - | pilS | 100.0 | 99.2 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 55239 | 56273 | - | pilT | 100.0 | 99.4 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_98 | 53913 | 55061 | - | pilU | 100.0 | 99.8 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 23935 | 24492 | - | pilV | 100.0 | 99.3 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 23114 | 23938 | - | pilW | 100.0 | 98.9 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 22530 | 23117 | - | pilX | 100.0 | 99.3 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 19027 | 22518 | - | pilY1 | 99.6 | 91.6 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_148 | 18678 | 19025 | - | pilY2 | 100.0 | 99.1 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 38101 | 40293 | + | plcH | 100.0 | 99.6 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 23112 | 24284 | + | popB | 100.0 | 99.5 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 24296 | 25183 | + | popD | 100.0 | 97.3 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 16671 | 17537 | + | popN | 100.0 | 99.4 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 20647 | 23745 | - | ppkA | 100.0 | 99.5 | NP_248764 | (ppkA) serine/threonine protein kinase PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 23753 | 24481 | - | pppA | 100.0 | 99.6 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 28518 | 28940 | + | pscB | 100.0 | 99.3 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 28940 | 30742 | + | pscC | 100.0 | 99.3 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 30744 | 32042 | + | pscD | 100.0 | 99.1 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 32005 | 32208 | + | pscE | 100.0 | 98.0 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 32211 | 32468 | + | pscF | 100.0 | 99.6 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 32471 | 32818 | + | pscG | 100.0 | 99.1 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_180 | 18 | 445 | + | pscH | 99.1 | 94.9 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_180 | 445 | 783 | + | pscI | 100.0 | 99.7 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_180 | 780 | 1526 | + | pscJ | 100.0 | 99.5 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_180 | 1535 | 2155 | + | pscK | 99.0 | 97.8 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_180 | 2134 | 2778 | + | pscL | 100.0 | 98.8 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 15158 | 16480 | - | pscN | 100.0 | 99.5 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 14685 | 15161 | - | pscO | 100.0 | 99.4 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 13615 | 14697 | - | pscP | 96.8 | 94.8 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 12689 | 13618 | - | pscQ | 100.0 | 99.1 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 12039 | 12692 | - | pscR | 100.0 | 99.4 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 11770 | 12036 | - | pscS | 100.0 | 100.0 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 10985 | 11773 | - | pscT | 100.0 | 99.1 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_127 | 9939 | 10988 | - | pscU | 100.0 | 98.9 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_284 | 2389 | 3327 | - | ptxR | 100.0 | 98.7 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 978 | 1964 | - | pvcA | 100.0 | 99.4 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_14 | 85 | 960 | - | pvcB | 100.0 | 99.0 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_284 | 143 | 1645 | + | pvcC | 100.0 | 98.9 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_284 | 1638 | 2284 | + | pvcD | 99.8 | 97.8 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_109 | 6108 | 7439 | + | pvdA | 100.0 | 83.3 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 10376 | 11203 | + | pvdF | 100.0 | 82.2 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_141 | 36321 | 37085 | - | pvdG | 100.0 | 98.6 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_141 | 9278 | 10687 | - | pvdH | 100.0 | 99.2 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_141 | 23219 | 36247 | - | pvdL | 100.0 | 99.1 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 13460 | 14806 | - | pvdM | 99.8 | 95.6 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 12154 | 13437 | - | pvdN | 100.0 | 99.2 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 11271 | 12125 | - | pvdO | 100.0 | 98.1 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_151 | 15020 | 16666 | + | pvdP | 99.8 | 85.0 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_109 | 7562 | 9850 | + | pvdQ | 100.0 | 99.3 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_141 | 37728 | 38291 | + | pvdS | 100.0 | 97.7 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_278 | 2254 | 3141 | - | rhlA | 100.0 | 99.7 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_278 | 908 | 2188 | - | rhlB | 100.0 | 99.8 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 24400 | 25377 | + | rhlC | 100.0 | 98.9 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| k141_310 | 38 | 643 | + | rhlI | 100.0 | 98.7 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 24491 | 25171 | - | tagF/pppB | 100.0 | 98.8 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 16051 | 16965 | - | tagQ | 100.0 | 98.0 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 17027 | 18739 | - | tagR | 100.0 | 99.4 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 18732 | 19931 | - | tagS | 100.0 | 99.3 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 19931 | 20650 | - | tagT | 100.0 | 98.3 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 4973 | 6889 | + | toxA | 100.0 | 98.8 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| k141_170 | 31278 | 31742 | + | tse1 | 100.0 | 99.8 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 34486 | 34962 | - | tse2 | 100.0 | 98.7 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_278 | 8414 | 9640 | + | tse3 | 100.0 | 99.2 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 44590 | 46521 | + | vgrG1a | 100.0 | 99.2 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_290 | 33755 | 35032 | + | waaA | 100.0 | 99.2 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_290 | 8000 | 9067 | + | waaC | 100.0 | 99.2 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_290 | 6966 | 8003 | + | waaF | 100.0 | 99.5 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_290 | 9064 | 10185 | + | waaG | 100.0 | 99.2 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_290 | 10182 | 10988 | + | waaP | 100.0 | 99.3 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_304 | 21944 | 22816 | - | xcpA/pilD | 100.0 | 99.3 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 7929 | 8636 | + | xcpP | 100.0 | 99.7 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 8641 | 10617 | + | xcpQ | 100.0 | 99.0 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 6201 | 7709 | - | xcpR | 100.0 | 99.5 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 4984 | 6201 | - | xcpS | 100.0 | 99.3 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 4533 | 4979 | - | xcpT | 100.0 | 99.3 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 4008 | 4526 | - | xcpU | 100.0 | 98.5 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 3622 | 4011 | - | xcpV | 100.0 | 99.2 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 2921 | 3625 | - | xcpW | 98.7 | 98.3 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 1923 | 2924 | - | xcpX | 100.0 | 99.1 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 778 | 1926 | - | xcpY | 100.0 | 98.3 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 252 | 776 | - | xcpZ | 100.0 | 99.2 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
166_pio
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_94 | 148235 | 149404 | - | alg44 | 100.0 | 99.7 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 149487 | 150971 | - | alg8 | 100.0 | 99.7 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 135770 | 137215 | - | algA | 100.0 | 99.5 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_44 | 64693 | 66042 | - | algB | 100.0 | 99.8 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_74 | 15244 | 16635 | - | algC | 100.0 | 99.9 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 151111 | 152421 | - | algD | 100.0 | 99.8 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 145325 | 146797 | - | algE | 100.0 | 99.7 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 137412 | 138062 | - | algF | 100.0 | 99.7 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 143673 | 145304 | - | algG | 100.0 | 99.7 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 139325 | 140887 | - | algI | 100.0 | 99.6 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 138135 | 139310 | - | algJ | 100.0 | 99.5 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 146794 | 148221 | - | algK | 100.0 | 99.7 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 141129 | 142232 | - | algL | 100.0 | 99.7 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_10 | 12266 | 13312 | + | algP/algR3 | 98.9 | 96.7 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_10 | 10967 | 11449 | + | algQ | 100.0 | 98.8 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_10 | 5077 | 5823 | + | algR | 100.0 | 99.3 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_145 | 37953 | 38534 | - | algU | 100.0 | 99.1 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_177 | 22471 | 23640 | - | algW | 100.0 | 99.1 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 142236 | 143660 | - | algX | 100.0 | 99.5 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_10 | 3996 | 5072 | + | algZ | 100.0 | 99.6 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_242 | 6157 | 7596 | + | aprA | 100.0 | 99.3 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 25085 | 32515 | + | chpA | 99.9 | 98.7 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 32508 | 33539 | + | chpB | 100.0 | 99.0 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 33536 | 34042 | + | chpC | 100.0 | 98.8 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 34050 | 34844 | + | chpD | 100.0 | 99.2 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 34920 | 35531 | + | chpE | 100.0 | 98.9 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 48215 | 50923 | - | clpV1 | 100.0 | 99.2 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 62711 | 64060 | + | dotU1 | 100.0 | 99.7 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_253 | 5598 | 6971 | - | exoT | 100.0 | 99.2 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| k141_24 | 95305 | 97368 | - | exoU | 100.0 | 100.0 | AAC16023 | (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103] |
| k141_212 | 29955 | 31090 | + | exoY | 99.9 | 99.0 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 24582 | 25418 | - | exsA | 100.0 | 99.6 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 25716 | 26129 | - | exsB | 100.0 | 98.3 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 26392 | 26829 | - | exsC | 100.0 | 98.4 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 23654 | 24484 | - | exsD | 100.0 | 98.8 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 26138 | 26383 | - | exsE | 100.0 | 97.2 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 59388 | 60845 | + | fha1 | 97.6 | 96.7 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 15730 | 16239 | + | fimT | 100.0 | 97.1 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 16345 | 16851 | + | fimU | 100.0 | 99.2 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_290 | 13756 | 16530 | + | fimV | 100.0 | 98.3 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 57689 | 58531 | + | fleN | 100.0 | 98.9 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 32734 | 34206 | - | fleQ | 100.0 | 99.2 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 29993 | 31408 | - | fleR | 99.6 | 98.9 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 31413 | 32621 | - | fleS | 100.0 | 99.1 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_283 | 10676 | 11374 | + | flgA | 100.0 | 98.3 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 60613 | 61020 | - | flgB | 100.0 | 100.0 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 60167 | 60607 | - | flgC | 100.0 | 99.8 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 59441 | 60154 | - | flgD | 100.0 | 99.6 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 58025 | 59413 | - | flgE | 100.0 | 99.4 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 57059 | 57808 | - | flgF | 100.0 | 99.3 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 56227 | 57012 | - | flgG | 100.0 | 99.5 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 55486 | 56181 | - | flgH | 100.0 | 98.8 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 54365 | 55474 | - | flgI | 100.0 | 99.4 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 53152 | 54354 | - | flgJ | 100.0 | 99.1 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 51085 | 53133 | - | flgK | 99.7 | 86.7 | NP_249777 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_283 | 11519 | 11842 | + | flgM | 100.0 | 98.2 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_283 | 11897 | 12367 | + | flgN | 100.0 | 98.7 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 54054 | 56177 | + | flhA | 100.0 | 99.3 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 50073 | 51209 | + | flhB | 100.0 | 99.7 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 56261 | 57550 | + | flhF | 100.0 | 99.5 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 58528 | 59271 | + | fliA | 100.0 | 99.7 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 29417 | 29746 | - | fliE | 100.0 | 99.7 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 27598 | 29394 | - | fliF | 100.0 | 99.5 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 26576 | 27592 | - | fliG | 100.0 | 99.6 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 25768 | 26574 | - | fliH | 100.0 | 99.1 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 24423 | 25778 | - | fliI | 100.0 | 99.1 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_3 | 23966 | 24409 | - | fliJ | 100.0 | 99.1 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 44234 | 45517 | + | fliK | 100.0 | 98.2 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 45761 | 46282 | + | fliL | 100.0 | 100.0 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 46290 | 47261 | + | fliM | 100.0 | 99.9 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 47289 | 47762 | + | fliN | 100.0 | 98.5 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 47764 | 48216 | + | fliO | 100.0 | 98.9 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 48213 | 48980 | + | fliP | 100.0 | 99.3 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 49025 | 49294 | + | fliQ | 100.0 | 99.6 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 49294 | 50070 | + | fliR | 100.0 | 99.2 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_126 | 4635 | 6797 | - | fptA | 100.0 | 99.3 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 55306 | 55794 | - | hcp1 | 100.0 | 100.0 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 57986 | 59020 | - | hsiA1 | 100.0 | 99.8 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 57379 | 57897 | - | hsiB1/vipA | 100.0 | 99.8 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 55870 | 57366 | - | hsiC1/vipB | 100.0 | 99.5 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 54293 | 55138 | - | hsiE1 | 100.0 | 98.7 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 53782 | 54291 | - | hsiF1 | 100.0 | 98.8 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 51926 | 53785 | - | hsiG1 | 100.0 | 99.2 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 50916 | 51962 | - | hsiH1 | 100.0 | 98.8 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 61370 | 62704 | + | hsiJ1 | 100.0 | 99.6 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 64282 | 67590 | + | icmF1/tssM1 | 100.0 | 99.1 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_221 | 131 | 1387 | - | lasA | 100.0 | 98.0 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| k141_139 | 15802 | 17298 | + | lasB | 100.0 | 98.5 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 32992 | 33597 | + | lasI | 100.0 | 99.8 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 60890 | 61354 | + | lip1 | 100.0 | 100.0 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_134 | 8982 | 9200 | - | mbtH-like | 100.0 | 100.0 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_73 | 20285 | 21136 | + | motA | 100.0 | 98.2 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_73 | 21156 | 22199 | + | motB | 100.0 | 99.3 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 64266 | 65006 | + | motC | 100.0 | 99.2 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_232 | 65019 | 65909 | + | motD | 100.0 | 98.7 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 168287 | 169252 | + | motY | 100.0 | 99.3 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_145 | 37337 | 37921 | - | mucA | 100.0 | 99.1 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_145 | 36378 | 37328 | - | mucB | 100.0 | 99.0 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_145 | 35926 | 36381 | - | mucC | 100.0 | 99.6 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_145 | 34462 | 35886 | - | mucD | 100.0 | 98.9 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_224 | 10291 | 10560 | + | mucE | 100.0 | 98.5 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_94 | 25999 | 27351 | + | mucP | 100.0 | 99.3 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_206 | 6322 | 7752 | - | pchA | 100.0 | 99.0 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_206 | 7749 | 8054 | - | pchB | 100.0 | 99.7 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_206 | 8054 | 8809 | - | pchC | 100.0 | 99.3 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_206 | 8806 | 10449 | - | pchD | 100.0 | 99.2 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_206 | 11763 | 15718 | + | pchE | 91.6 | 98.4 | NP_252916 | (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_252 | 2003 | 7432 | - | pchF | 100.0 | 98.8 | NP_252915 | (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_252 | 957 | 2006 | - | pchG | 100.0 | 98.9 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_126 | 6889 | 8613 | - | pchI | 100.0 | 99.0 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_206 | 10679 | 11569 | + | pchR | 100.0 | 99.0 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 34342 | 34620 | - | pcr1 | 100.0 | 99.6 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 33984 | 34355 | - | pcr2 | 100.0 | 98.9 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 33622 | 33987 | - | pcr3 | 100.0 | 98.4 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 33288 | 33617 | - | pcr4 | 100.0 | 99.1 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 31171 | 33291 | - | pcrD | 100.0 | 99.0 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 30416 | 30712 | - | pcrG | 100.0 | 99.7 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 29007 | 29513 | - | pcrH | 100.0 | 99.2 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 30740 | 31174 | - | pcrR | 100.0 | 99.3 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 29522 | 30406 | - | pcrV | 100.0 | 99.0 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_35 | 244 | 678 | + | phzB1 | 89.0 | 89.7 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 184 | 672 | + | phzB1 | 100.0 | 98.6 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 4045 | 5262 | - | phzC1 | 100.0 | 99.3 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 3425 | 4048 | - | phzD1 | 100.0 | 99.4 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 1545 | 3428 | - | phzE1 | 100.0 | 99.2 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 695 | 1531 | - | phzF1 | 100.0 | 99.5 | NP_252904 | (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 25 | 669 | - | phzG1 | 100.0 | 99.7 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_147 | 20480 | 22312 | - | phzH | 100.0 | 99.1 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_121 | 46143 | 47147 | - | phzM | 100.0 | 99.1 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_126 | 297 | 1505 | + | phzS | 100.0 | 98.4 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_142 | 31592 | 33291 | + | pilB | 99.9 | 88.4 | NP_253216 | (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 22653 | 23078 | + | pilE | 100.0 | 99.5 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_263 | 36865 | 37623 | - | pilF | 100.0 | 98.8 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 20598 | 21005 | + | pilG | 100.0 | 100.0 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 21052 | 21417 | + | pilH | 100.0 | 99.7 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 21468 | 22004 | + | pilI | 100.0 | 99.8 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 22089 | 24137 | + | pilJ | 100.0 | 99.7 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 24198 | 25073 | + | pilK | 100.0 | 99.3 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 26847 | 27911 | - | pilM | 100.0 | 99.5 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 26251 | 26847 | - | pilN | 100.0 | 99.2 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 25631 | 26254 | - | pilO | 100.0 | 98.4 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 25110 | 25634 | - | pilP | 100.0 | 99.4 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 22912 | 25056 | - | pilQ | 100.0 | 97.2 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 13118 | 14455 | + | pilR | 100.0 | 99.5 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 11511 | 13103 | + | pilS | 100.0 | 99.2 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 7527 | 8561 | + | pilT | 100.0 | 99.4 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_265 | 8739 | 9887 | + | pilU | 100.0 | 99.8 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 16842 | 17399 | + | pilV | 100.0 | 99.3 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 17396 | 18220 | + | pilW | 100.0 | 98.9 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 18217 | 18804 | + | pilX | 100.0 | 99.3 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 18816 | 22307 | + | pilY1 | 99.6 | 91.6 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_162 | 22309 | 22656 | + | pilY2 | 100.0 | 99.1 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_20 | 48104 | 50296 | + | plcH | 100.0 | 99.6 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 27854 | 29026 | - | popB | 100.0 | 99.5 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 26955 | 27842 | - | popD | 100.0 | 97.3 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 34601 | 35467 | - | popN | 100.0 | 99.4 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 68277 | 69005 | + | pppA | 100.0 | 99.6 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 23198 | 23620 | - | pscB | 100.0 | 99.3 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 21396 | 23198 | - | pscC | 100.0 | 99.3 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 20096 | 21394 | - | pscD | 100.0 | 99.1 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 19930 | 20133 | - | pscE | 100.0 | 98.0 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 19670 | 19927 | - | pscF | 100.0 | 99.6 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 19320 | 19667 | - | pscG | 100.0 | 99.1 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 18892 | 19323 | - | pscH | 100.0 | 99.1 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 18554 | 18892 | - | pscI | 100.0 | 99.7 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 17811 | 18557 | - | pscJ | 100.0 | 99.5 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 17182 | 17802 | - | pscK | 99.0 | 97.8 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 16559 | 17203 | - | pscL | 100.0 | 98.8 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 35658 | 36980 | + | pscN | 100.0 | 99.5 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 36977 | 37453 | + | pscO | 100.0 | 99.4 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 37441 | 38523 | + | pscP | 96.8 | 94.8 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 38520 | 39449 | + | pscQ | 100.0 | 99.1 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 39446 | 40099 | + | pscR | 100.0 | 99.4 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 40102 | 40368 | + | pscS | 100.0 | 100.0 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 40365 | 41153 | + | pscT | 100.0 | 99.1 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_285 | 41150 | 42199 | + | pscU | 100.0 | 98.9 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_41 | 2396 | 3334 | - | ptxR | 100.0 | 98.7 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_238 | 968 | 1954 | - | pvcA | 100.0 | 99.4 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_238 | 75 | 950 | - | pvcB | 100.0 | 99.0 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_41 | 150 | 1652 | + | pvcC | 100.0 | 98.9 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_41 | 1645 | 2291 | + | pvcD | 99.8 | 97.8 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 6114 | 7445 | + | pvdA | 100.0 | 83.3 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 10376 | 11203 | + | pvdF | 100.0 | 82.2 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_134 | 36321 | 37085 | - | pvdG | 100.0 | 98.6 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_134 | 9278 | 10687 | - | pvdH | 100.0 | 99.2 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_134 | 23219 | 36247 | - | pvdL | 100.0 | 99.1 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 13460 | 14806 | - | pvdM | 99.8 | 95.6 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 12154 | 13437 | - | pvdN | 100.0 | 99.2 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 11271 | 12125 | - | pvdO | 100.0 | 98.1 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_191 | 15020 | 16666 | + | pvdP | 99.8 | 85.0 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 7568 | 9856 | + | pvdQ | 100.0 | 99.3 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_134 | 37728 | 38291 | + | pvdS | 100.0 | 97.7 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_270 | 2368 | 3255 | - | rhlA | 100.0 | 99.7 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_270 | 1022 | 2302 | - | rhlB | 100.0 | 99.8 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_82 | 17682 | 18659 | + | rhlC | 100.0 | 98.9 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| k141_225 | 17785 | 18390 | - | rhlI | 100.0 | 98.7 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 67587 | 68267 | + | tagF/pppB | 100.0 | 98.8 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_147 | 6016 | 6930 | + | tagQ | 100.0 | 98.0 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_147 | 4242 | 5954 | + | tagR | 100.0 | 99.4 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_147 | 3050 | 4249 | + | tagS | 100.0 | 99.3 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_147 | 2331 | 3050 | + | tagT | 100.0 | 98.3 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_251 | 4973 | 6889 | + | toxA | 100.0 | 98.8 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| k141_221 | 31264 | 31728 | + | tse1 | 100.0 | 99.8 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_136 | 171907 | 172383 | + | tse2 | 100.0 | 98.7 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_270 | 8528 | 9754 | + | tse3 | 100.0 | 99.2 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 46237 | 48168 | - | vgrG1a | 100.0 | 99.2 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_243 | 41291 | 43516 | - | vgrG1b | 100.0 | 98.7 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 14062 | 15339 | - | waaA | 100.0 | 99.2 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 40027 | 41094 | - | waaC | 100.0 | 99.2 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 41091 | 42128 | - | waaF | 100.0 | 99.5 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 38909 | 40030 | - | waaG | 100.0 | 99.2 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_281 | 38106 | 38912 | - | waaP | 100.0 | 99.3 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_142 | 34519 | 35391 | + | xcpA/pilD | 100.0 | 99.3 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 11093 | 11800 | - | xcpP | 100.0 | 99.7 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 9112 | 11088 | - | xcpQ | 100.0 | 99.0 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 12020 | 13528 | + | xcpR | 100.0 | 99.5 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 13528 | 14745 | + | xcpS | 100.0 | 99.3 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 14750 | 15196 | + | xcpT | 100.0 | 99.3 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 15203 | 15721 | + | xcpU | 100.0 | 98.5 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 15718 | 16107 | + | xcpV | 100.0 | 99.2 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 16104 | 16808 | + | xcpW | 98.7 | 98.3 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 16805 | 17806 | + | xcpX | 100.0 | 99.1 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 17803 | 18951 | + | xcpY | 100.0 | 98.3 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_54 | 18953 | 19477 | + | xcpZ | 100.0 | 99.2 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
168_pio
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_132 | 3995 | 5164 | + | alg44 | 100.0 | 99.7 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 2428 | 3912 | + | alg8 | 100.0 | 99.7 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 16184 | 17629 | + | algA | 100.0 | 99.5 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_97 | 13776 | 15125 | - | algB | 100.0 | 99.8 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_112 | 104663 | 106054 | + | algC | 100.0 | 99.9 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 978 | 2288 | + | algD | 100.0 | 99.8 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 6602 | 8074 | + | algE | 100.0 | 99.7 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 15337 | 15987 | + | algF | 100.0 | 99.7 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 8095 | 9726 | + | algG | 100.0 | 99.7 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 12512 | 14074 | + | algI | 100.0 | 99.6 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 14089 | 15264 | + | algJ | 100.0 | 99.5 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 5178 | 6605 | + | algK | 100.0 | 99.7 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 11167 | 12270 | + | algL | 100.0 | 99.7 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 12266 | 13312 | + | algP/algR3 | 98.9 | 96.7 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 10967 | 11449 | + | algQ | 100.0 | 98.8 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 5077 | 5823 | + | algR | 100.0 | 99.3 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 3969 | 4550 | + | algU | 100.0 | 99.1 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_70 | 22461 | 23630 | - | algW | 100.0 | 99.1 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 9739 | 11163 | + | algX | 100.0 | 99.5 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 3996 | 5072 | + | algZ | 100.0 | 99.6 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 5204 | 6643 | - | aprA | 100.0 | 99.3 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 31263 | 38693 | - | chpA | 99.9 | 98.7 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 30239 | 31270 | - | chpB | 100.0 | 99.0 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 29736 | 30242 | - | chpC | 100.0 | 98.8 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 28934 | 29728 | - | chpD | 100.0 | 99.2 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 28247 | 28858 | - | chpE | 100.0 | 98.9 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 19035 | 21743 | + | clpV1 | 100.0 | 99.2 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 5898 | 7247 | - | dotU1 | 100.0 | 99.7 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_163 | 5550 | 6923 | - | exoT | 100.0 | 99.2 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| k141_22 | 1069 | 3132 | + | exoU | 100.0 | 100.0 | AAC16023 | (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103] |
| k141_66 | 30033 | 31168 | + | exoY | 99.9 | 99.0 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 26599 | 27435 | + | exsA | 100.0 | 99.6 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 25888 | 26301 | + | exsB | 100.0 | 98.3 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 25188 | 25625 | + | exsC | 100.0 | 98.4 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 27533 | 28363 | + | exsD | 100.0 | 98.8 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 25634 | 25879 | + | exsE | 100.0 | 97.2 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 9113 | 10570 | - | fha1 | 97.6 | 96.7 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 25075 | 25584 | - | fimT | 100.0 | 97.1 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 24463 | 24969 | - | fimU | 100.0 | 99.2 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 19722 | 22496 | - | fimV | 100.0 | 98.3 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 29137 | 29979 | + | fleN | 100.0 | 98.9 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 23564 | 25036 | - | fleQ | 100.0 | 99.2 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 20823 | 22238 | - | fleR | 99.6 | 98.9 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 22243 | 23451 | - | fleS | 100.0 | 99.1 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_245 | 26379 | 27077 | + | flgA | 100.0 | 98.3 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 51443 | 51850 | - | flgB | 100.0 | 100.0 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 50997 | 51437 | - | flgC | 100.0 | 99.8 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 50271 | 50984 | - | flgD | 100.0 | 99.6 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 48855 | 50243 | - | flgE | 100.0 | 99.4 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 47889 | 48638 | - | flgF | 100.0 | 99.3 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 47057 | 47842 | - | flgG | 100.0 | 99.5 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 46316 | 47011 | - | flgH | 100.0 | 98.8 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 45195 | 46304 | - | flgI | 100.0 | 99.4 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 43982 | 45184 | - | flgJ | 100.0 | 99.1 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 41915 | 43963 | - | flgK | 99.7 | 86.7 | NP_249777 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_245 | 27222 | 27545 | + | flgM | 100.0 | 98.2 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_245 | 27600 | 28070 | + | flgN | 100.0 | 98.7 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 25502 | 27625 | + | flhA | 100.0 | 99.3 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 21521 | 22657 | + | flhB | 100.0 | 99.7 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 27709 | 28998 | + | flhF | 100.0 | 99.5 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 29976 | 30719 | + | fliA | 100.0 | 99.7 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 20247 | 20576 | - | fliE | 100.0 | 99.7 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 18428 | 20224 | - | fliF | 100.0 | 99.5 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 17406 | 18422 | - | fliG | 100.0 | 99.6 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 16598 | 17404 | - | fliH | 100.0 | 99.1 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 15253 | 16608 | - | fliI | 100.0 | 99.1 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 14796 | 15239 | - | fliJ | 100.0 | 99.1 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 15682 | 16965 | + | fliK | 100.0 | 98.2 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 17209 | 17730 | + | fliL | 100.0 | 100.0 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 17738 | 18709 | + | fliM | 100.0 | 99.9 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 18737 | 19210 | + | fliN | 100.0 | 98.5 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 19212 | 19664 | + | fliO | 100.0 | 98.9 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 19661 | 20428 | + | fliP | 100.0 | 99.3 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 20473 | 20742 | + | fliQ | 100.0 | 99.6 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 20742 | 21518 | + | fliR | 100.0 | 99.2 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 4635 | 6797 | - | fptA | 100.0 | 99.3 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 14164 | 14652 | + | hcp1 | 100.0 | 100.0 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 10938 | 11972 | + | hsiA1 | 100.0 | 99.8 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 12061 | 12579 | + | hsiB1/vipA | 100.0 | 99.8 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 12592 | 14088 | + | hsiC1/vipB | 100.0 | 99.5 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 14820 | 15665 | + | hsiE1 | 100.0 | 98.7 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 15667 | 16176 | + | hsiF1 | 100.0 | 98.8 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 16173 | 18032 | + | hsiG1 | 100.0 | 99.2 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 17996 | 19042 | + | hsiH1 | 100.0 | 98.8 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 7254 | 8588 | - | hsiJ1 | 100.0 | 99.6 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 2368 | 5676 | - | icmF1/tssM1 | 100.0 | 99.1 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 35846 | 37102 | - | lasA | 100.0 | 98.0 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| k141_176 | 9058 | 10554 | - | lasB | 100.0 | 98.5 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 4440 | 5045 | + | lasI | 100.0 | 99.8 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 8604 | 9068 | - | lip1 | 100.0 | 100.0 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 129026 | 129244 | + | mbtH-like | 100.0 | 100.0 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_172 | 105414 | 106265 | - | motA | 100.0 | 98.2 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_172 | 104351 | 105394 | - | motB | 100.0 | 99.3 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 35714 | 36454 | + | motC | 100.0 | 99.2 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 36467 | 37357 | + | motD | 100.0 | 98.7 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_142 | 15052 | 16017 | + | motY | 100.0 | 99.3 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 4582 | 5166 | + | mucA | 100.0 | 99.1 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 5175 | 6125 | + | mucB | 100.0 | 99.0 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 6122 | 6577 | + | mucC | 100.0 | 99.6 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 6617 | 8041 | + | mucD | 100.0 | 98.9 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 10260 | 10529 | + | mucE | 100.0 | 98.5 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 126104 | 127456 | - | mucP | 100.0 | 99.3 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 7915 | 9345 | + | pchA | 100.0 | 99.0 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 7613 | 7918 | + | pchB | 100.0 | 99.7 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 6858 | 7613 | + | pchC | 100.0 | 99.3 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 5218 | 6861 | + | pchD | 100.0 | 99.2 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 4 | 3904 | - | pchE | 90.4 | 98.7 | NP_252916 | (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_144 | 2013 | 7442 | - | pchF | 100.0 | 98.8 | NP_252915 | (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_144 | 967 | 2016 | - | pchG | 100.0 | 98.9 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 6889 | 8613 | - | pchI | 100.0 | 99.0 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 4098 | 4988 | - | pchR | 100.0 | 99.0 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 17397 | 17675 | + | pcr1 | 100.0 | 99.6 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 17662 | 18033 | + | pcr2 | 100.0 | 98.9 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 18030 | 18395 | + | pcr3 | 100.0 | 98.4 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 18400 | 18729 | + | pcr4 | 100.0 | 99.1 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 18726 | 20846 | + | pcrD | 100.0 | 99.0 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 21305 | 21601 | + | pcrG | 100.0 | 99.7 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 22504 | 23010 | + | pcrH | 100.0 | 99.2 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 20843 | 21277 | + | pcrR | 100.0 | 99.3 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 21611 | 22495 | + | pcrV | 100.0 | 99.0 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_227 | 184 | 672 | + | phzB1 | 100.0 | 98.6 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_228 | 244 | 678 | + | phzB1 | 89.0 | 89.7 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 4045 | 5262 | - | phzC1 | 100.0 | 99.3 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 3425 | 4048 | - | phzD1 | 100.0 | 99.2 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 1545 | 3428 | - | phzE1 | 100.0 | 99.0 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 695 | 1531 | - | phzF1 | 100.0 | 99.3 | NP_252904 | (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 25 | 669 | - | phzG1 | 100.0 | 99.7 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 20349 | 22181 | - | phzH | 100.0 | 99.1 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_86 | 11332 | 12336 | - | phzM | 100.0 | 99.1 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 297 | 1505 | + | phzS | 100.0 | 98.4 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_6 | 37133 | 38832 | + | pilB | 99.9 | 88.4 | NP_253216 | (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 18236 | 18661 | - | pilE | 100.0 | 99.5 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_176 | 104590 | 105348 | - | pilF | 100.0 | 98.8 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 42773 | 43180 | - | pilG | 100.0 | 100.0 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 42361 | 42726 | - | pilH | 100.0 | 99.7 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 41774 | 42310 | - | pilI | 100.0 | 99.8 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 39641 | 41689 | - | pilJ | 100.0 | 99.7 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 38705 | 39580 | - | pilK | 100.0 | 99.3 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 13857 | 14921 | + | pilM | 100.0 | 99.5 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 14921 | 15517 | + | pilN | 100.0 | 99.2 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 15514 | 16137 | + | pilO | 100.0 | 98.4 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 16134 | 16658 | + | pilP | 100.0 | 99.4 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 16712 | 18856 | + | pilQ | 100.0 | 97.2 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 26859 | 28196 | - | pilR | 100.0 | 99.5 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 28211 | 29803 | - | pilS | 100.0 | 99.2 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_291 | 7825 | 8859 | + | pilT | 100.0 | 99.4 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_291 | 9037 | 10185 | + | pilU | 100.0 | 99.8 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 23915 | 24472 | - | pilV | 100.0 | 99.3 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 23094 | 23918 | - | pilW | 100.0 | 98.9 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 22510 | 23097 | - | pilX | 100.0 | 99.3 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 19007 | 22498 | - | pilY1 | 99.6 | 91.6 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 18658 | 19005 | - | pilY2 | 100.0 | 99.1 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_179 | 45365 | 47557 | - | plcH | 100.0 | 99.6 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 22991 | 24163 | + | popB | 100.0 | 99.5 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 24175 | 25062 | + | popD | 100.0 | 97.3 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 16550 | 17416 | + | popN | 100.0 | 99.4 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 953 | 1681 | - | pppA | 100.0 | 99.6 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 28397 | 28819 | + | pscB | 100.0 | 99.3 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 28819 | 30621 | + | pscC | 100.0 | 99.3 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 30623 | 31921 | + | pscD | 100.0 | 99.1 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 31884 | 32087 | + | pscE | 100.0 | 98.0 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 32090 | 32347 | + | pscF | 100.0 | 99.6 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 32350 | 32697 | + | pscG | 100.0 | 99.1 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 32694 | 33125 | + | pscH | 100.0 | 99.3 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 33125 | 33463 | + | pscI | 100.0 | 99.7 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 33460 | 34206 | + | pscJ | 100.0 | 99.5 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 34215 | 34835 | + | pscK | 99.0 | 97.8 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 34814 | 35458 | + | pscL | 100.0 | 98.8 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 15037 | 16359 | - | pscN | 100.0 | 99.5 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 14564 | 15040 | - | pscO | 100.0 | 99.4 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 13494 | 14576 | - | pscP | 96.8 | 94.8 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 12568 | 13497 | - | pscQ | 100.0 | 99.1 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 11918 | 12571 | - | pscR | 100.0 | 99.4 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 11649 | 11915 | - | pscS | 100.0 | 100.0 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 10864 | 11652 | - | pscT | 100.0 | 99.1 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 9818 | 10867 | - | pscU | 100.0 | 98.9 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_197 | 2393 | 3331 | - | ptxR | 100.0 | 98.7 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_171 | 7727 | 8713 | - | pvcA | 100.0 | 99.4 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_171 | 6834 | 7709 | - | pvcB | 100.0 | 99.0 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_197 | 147 | 1649 | + | pvcC | 100.0 | 98.9 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_197 | 1642 | 2288 | + | pvcD | 99.8 | 97.8 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 5381 | 6701 | - | pvdA | 99.2 | 82.7 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 18661 | 19488 | - | pvdF | 100.0 | 82.2 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_287 | 22173 | 22937 | - | pvdG | 100.0 | 98.6 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 127539 | 128948 | + | pvdH | 100.0 | 99.2 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_287 | 9071 | 22099 | - | pvdL | 100.0 | 99.1 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 15058 | 16404 | + | pvdM | 99.8 | 95.6 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 16427 | 17710 | + | pvdN | 100.0 | 99.2 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 17739 | 18593 | + | pvdO | 100.0 | 98.1 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 13198 | 14844 | - | pvdP | 99.8 | 85.0 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 2970 | 5258 | - | pvdQ | 100.0 | 99.3 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_287 | 23580 | 24143 | + | pvdS | 100.0 | 97.7 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 7314 | 8201 | + | rhlA | 100.0 | 99.7 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 8267 | 9547 | + | rhlB | 100.0 | 99.8 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 584 | 1561 | - | rhlC | 100.0 | 98.9 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| k141_248 | 23432 | 24037 | - | rhlI | 100.0 | 98.7 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 1691 | 2371 | - | tagF/pppB | 100.0 | 98.8 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 5885 | 6799 | + | tagQ | 100.0 | 98.0 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 4111 | 5823 | + | tagR | 100.0 | 99.4 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 2919 | 4118 | + | tagS | 100.0 | 99.3 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 2200 | 2919 | + | tagT | 100.0 | 98.3 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_29 | 4973 | 6889 | + | toxA | 100.0 | 98.8 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 66979 | 67443 | + | tse1 | 100.0 | 99.8 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_48 | 16019 | 16495 | - | tse2 | 100.0 | 98.7 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 815 | 2041 | - | tse3 | 100.0 | 99.2 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 21790 | 23721 | + | vgrG1a | 100.0 | 99.2 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 26442 | 28667 | + | vgrG1b | 100.0 | 98.7 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 14078 | 15355 | - | waaA | 100.0 | 99.2 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 40043 | 41110 | - | waaC | 100.0 | 99.2 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 41107 | 42144 | - | waaF | 100.0 | 99.5 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 38925 | 40046 | - | waaG | 100.0 | 99.2 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 38122 | 38928 | - | waaP | 100.0 | 99.3 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_6 | 40060 | 40932 | + | xcpA/pilD | 100.0 | 99.3 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 7929 | 8636 | + | xcpP | 100.0 | 99.7 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 8641 | 10617 | + | xcpQ | 100.0 | 99.0 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 6201 | 7709 | - | xcpR | 100.0 | 99.5 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 4984 | 6201 | - | xcpS | 100.0 | 99.3 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 4533 | 4979 | - | xcpT | 100.0 | 99.3 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 4008 | 4526 | - | xcpU | 100.0 | 98.5 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 3622 | 4011 | - | xcpV | 100.0 | 99.2 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 2921 | 3625 | - | xcpW | 98.7 | 98.3 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 1923 | 2924 | - | xcpX | 100.0 | 99.1 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 778 | 1926 | - | xcpY | 100.0 | 98.3 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 252 | 776 | - | xcpZ | 100.0 | 99.2 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
pseudomonas.gbk
## Error in read.table("pseudomonas.gbk_vfdb.tab", header = T, sep = "\t", : no lines available in input| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| k141_132 | 3995 | 5164 | + | alg44 | 100.0 | 99.7 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 2428 | 3912 | + | alg8 | 100.0 | 99.7 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 16184 | 17629 | + | algA | 100.0 | 99.5 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_97 | 13776 | 15125 | - | algB | 100.0 | 99.8 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_112 | 104663 | 106054 | + | algC | 100.0 | 99.9 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 978 | 2288 | + | algD | 100.0 | 99.8 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 6602 | 8074 | + | algE | 100.0 | 99.7 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 15337 | 15987 | + | algF | 100.0 | 99.7 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 8095 | 9726 | + | algG | 100.0 | 99.7 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 12512 | 14074 | + | algI | 100.0 | 99.6 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 14089 | 15264 | + | algJ | 100.0 | 99.5 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 5178 | 6605 | + | algK | 100.0 | 99.7 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 11167 | 12270 | + | algL | 100.0 | 99.7 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 12266 | 13312 | + | algP/algR3 | 98.9 | 96.7 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 10967 | 11449 | + | algQ | 100.0 | 98.8 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 5077 | 5823 | + | algR | 100.0 | 99.3 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 3969 | 4550 | + | algU | 100.0 | 99.1 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_70 | 22461 | 23630 | - | algW | 100.0 | 99.1 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 9739 | 11163 | + | algX | 100.0 | 99.5 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_205 | 3996 | 5072 | + | algZ | 100.0 | 99.6 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_168 | 5204 | 6643 | - | aprA | 100.0 | 99.3 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 31263 | 38693 | - | chpA | 99.9 | 98.7 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 30239 | 31270 | - | chpB | 100.0 | 99.0 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 29736 | 30242 | - | chpC | 100.0 | 98.8 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 28934 | 29728 | - | chpD | 100.0 | 99.2 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 28247 | 28858 | - | chpE | 100.0 | 98.9 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 19035 | 21743 | + | clpV1 | 100.0 | 99.2 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 5898 | 7247 | - | dotU1 | 100.0 | 99.7 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_163 | 5550 | 6923 | - | exoT | 100.0 | 99.2 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| k141_22 | 1069 | 3132 | + | exoU | 100.0 | 100.0 | AAC16023 | (exoU) type III secretion system effector ExoU phospholipase A2 activity [ExoU (VF0098)] [Pseudomonas aeruginosa PA103] |
| k141_66 | 30033 | 31168 | + | exoY | 99.9 | 99.0 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 26599 | 27435 | + | exsA | 100.0 | 99.6 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 25888 | 26301 | + | exsB | 100.0 | 98.3 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 25188 | 25625 | + | exsC | 100.0 | 98.4 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 27533 | 28363 | + | exsD | 100.0 | 98.8 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 25634 | 25879 | + | exsE | 100.0 | 97.2 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 9113 | 10570 | - | fha1 | 97.6 | 96.7 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 25075 | 25584 | - | fimT | 100.0 | 97.1 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 24463 | 24969 | - | fimU | 100.0 | 99.2 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 19722 | 22496 | - | fimV | 100.0 | 98.3 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 29137 | 29979 | + | fleN | 100.0 | 98.9 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 23564 | 25036 | - | fleQ | 100.0 | 99.2 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 20823 | 22238 | - | fleR | 99.6 | 98.9 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 22243 | 23451 | - | fleS | 100.0 | 99.1 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_245 | 26379 | 27077 | + | flgA | 100.0 | 98.3 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 51443 | 51850 | - | flgB | 100.0 | 100.0 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 50997 | 51437 | - | flgC | 100.0 | 99.8 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 50271 | 50984 | - | flgD | 100.0 | 99.6 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 48855 | 50243 | - | flgE | 100.0 | 99.4 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 47889 | 48638 | - | flgF | 100.0 | 99.3 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 47057 | 47842 | - | flgG | 100.0 | 99.5 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 46316 | 47011 | - | flgH | 100.0 | 98.8 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 45195 | 46304 | - | flgI | 100.0 | 99.4 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 43982 | 45184 | - | flgJ | 100.0 | 99.1 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 41915 | 43963 | - | flgK | 99.7 | 86.7 | NP_249777 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_245 | 27222 | 27545 | + | flgM | 100.0 | 98.2 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_245 | 27600 | 28070 | + | flgN | 100.0 | 98.7 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 25502 | 27625 | + | flhA | 100.0 | 99.3 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 21521 | 22657 | + | flhB | 100.0 | 99.7 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 27709 | 28998 | + | flhF | 100.0 | 99.5 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 29976 | 30719 | + | fliA | 100.0 | 99.7 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 20247 | 20576 | - | fliE | 100.0 | 99.7 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 18428 | 20224 | - | fliF | 100.0 | 99.5 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 17406 | 18422 | - | fliG | 100.0 | 99.6 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 16598 | 17404 | - | fliH | 100.0 | 99.1 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 15253 | 16608 | - | fliI | 100.0 | 99.1 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_28 | 14796 | 15239 | - | fliJ | 100.0 | 99.1 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 15682 | 16965 | + | fliK | 100.0 | 98.2 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 17209 | 17730 | + | fliL | 100.0 | 100.0 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 17738 | 18709 | + | fliM | 100.0 | 99.9 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 18737 | 19210 | + | fliN | 100.0 | 98.5 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 19212 | 19664 | + | fliO | 100.0 | 98.9 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 19661 | 20428 | + | fliP | 100.0 | 99.3 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 20473 | 20742 | + | fliQ | 100.0 | 99.6 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 20742 | 21518 | + | fliR | 100.0 | 99.2 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 4635 | 6797 | - | fptA | 100.0 | 99.3 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 14164 | 14652 | + | hcp1 | 100.0 | 100.0 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 10938 | 11972 | + | hsiA1 | 100.0 | 99.8 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 12061 | 12579 | + | hsiB1/vipA | 100.0 | 99.8 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 12592 | 14088 | + | hsiC1/vipB | 100.0 | 99.5 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 14820 | 15665 | + | hsiE1 | 100.0 | 98.7 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 15667 | 16176 | + | hsiF1 | 100.0 | 98.8 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 16173 | 18032 | + | hsiG1 | 100.0 | 99.2 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 17996 | 19042 | + | hsiH1 | 100.0 | 98.8 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 7254 | 8588 | - | hsiJ1 | 100.0 | 99.6 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 2368 | 5676 | - | icmF1/tssM1 | 100.0 | 99.1 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 35846 | 37102 | - | lasA | 100.0 | 98.0 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| k141_176 | 9058 | 10554 | - | lasB | 100.0 | 98.5 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 4440 | 5045 | + | lasI | 100.0 | 99.8 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 8604 | 9068 | - | lip1 | 100.0 | 100.0 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 129026 | 129244 | + | mbtH-like | 100.0 | 100.0 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_172 | 105414 | 106265 | - | motA | 100.0 | 98.2 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_172 | 104351 | 105394 | - | motB | 100.0 | 99.3 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 35714 | 36454 | + | motC | 100.0 | 99.2 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_78 | 36467 | 37357 | + | motD | 100.0 | 98.7 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_142 | 15052 | 16017 | + | motY | 100.0 | 99.3 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 4582 | 5166 | + | mucA | 100.0 | 99.1 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 5175 | 6125 | + | mucB | 100.0 | 99.0 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 6122 | 6577 | + | mucC | 100.0 | 99.6 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| k141_175 | 6617 | 8041 | + | mucD | 100.0 | 98.9 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_105 | 10260 | 10529 | + | mucE | 100.0 | 98.5 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_132 | 126104 | 127456 | - | mucP | 100.0 | 99.3 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 7915 | 9345 | + | pchA | 100.0 | 99.0 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 7613 | 7918 | + | pchB | 100.0 | 99.7 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 6858 | 7613 | + | pchC | 100.0 | 99.3 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 5218 | 6861 | + | pchD | 100.0 | 99.2 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 4 | 3904 | - | pchE | 90.4 | 98.7 | NP_252916 | (pchE) dihydroaeruginoic acid synthetase PchE [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_144 | 2013 | 7442 | - | pchF | 100.0 | 98.8 | NP_252915 | (pchF) pyochelin synthetase PchF [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_144 | 967 | 2016 | - | pchG | 100.0 | 98.9 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 6889 | 8613 | - | pchI | 100.0 | 99.0 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_254 | 4098 | 4988 | - | pchR | 100.0 | 99.0 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 17397 | 17675 | + | pcr1 | 100.0 | 99.6 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 17662 | 18033 | + | pcr2 | 100.0 | 98.9 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 18030 | 18395 | + | pcr3 | 100.0 | 98.4 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 18400 | 18729 | + | pcr4 | 100.0 | 99.1 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 18726 | 20846 | + | pcrD | 100.0 | 99.0 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 21305 | 21601 | + | pcrG | 100.0 | 99.7 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 22504 | 23010 | + | pcrH | 100.0 | 99.2 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 20843 | 21277 | + | pcrR | 100.0 | 99.3 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 21611 | 22495 | + | pcrV | 100.0 | 99.0 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_227 | 184 | 672 | + | phzB1 | 100.0 | 98.6 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_228 | 244 | 678 | + | phzB1 | 89.0 | 89.7 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 4045 | 5262 | - | phzC1 | 100.0 | 99.3 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 3425 | 4048 | - | phzD1 | 100.0 | 99.2 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 1545 | 3428 | - | phzE1 | 100.0 | 99.0 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 695 | 1531 | - | phzF1 | 100.0 | 99.3 | NP_252904 | (phzF1) phenazine biosynthesis protein PhzF isomerase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_51 | 25 | 669 | - | phzG1 | 100.0 | 99.7 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 20349 | 22181 | - | phzH | 100.0 | 99.1 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| k141_86 | 11332 | 12336 | - | phzM | 100.0 | 99.1 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_89 | 297 | 1505 | + | phzS | 100.0 | 98.4 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| k141_6 | 37133 | 38832 | + | pilB | 99.9 | 88.4 | NP_253216 | (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 18236 | 18661 | - | pilE | 100.0 | 99.5 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_176 | 104590 | 105348 | - | pilF | 100.0 | 98.8 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 42773 | 43180 | - | pilG | 100.0 | 100.0 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 42361 | 42726 | - | pilH | 100.0 | 99.7 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 41774 | 42310 | - | pilI | 100.0 | 99.8 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 39641 | 41689 | - | pilJ | 100.0 | 99.7 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_68 | 38705 | 39580 | - | pilK | 100.0 | 99.3 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 13857 | 14921 | + | pilM | 100.0 | 99.5 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 14921 | 15517 | + | pilN | 100.0 | 99.2 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 15514 | 16137 | + | pilO | 100.0 | 98.4 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 16134 | 16658 | + | pilP | 100.0 | 99.4 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_275 | 16712 | 18856 | + | pilQ | 100.0 | 97.2 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 26859 | 28196 | - | pilR | 100.0 | 99.5 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 28211 | 29803 | - | pilS | 100.0 | 99.2 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_291 | 7825 | 8859 | + | pilT | 100.0 | 99.4 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_291 | 9037 | 10185 | + | pilU | 100.0 | 99.8 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 23915 | 24472 | - | pilV | 100.0 | 99.3 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 23094 | 23918 | - | pilW | 100.0 | 98.9 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 22510 | 23097 | - | pilX | 100.0 | 99.3 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 19007 | 22498 | - | pilY1 | 99.6 | 91.6 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_188 | 18658 | 19005 | - | pilY2 | 100.0 | 99.1 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_179 | 45365 | 47557 | - | plcH | 100.0 | 99.6 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 22991 | 24163 | + | popB | 100.0 | 99.5 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 24175 | 25062 | + | popD | 100.0 | 97.3 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 16550 | 17416 | + | popN | 100.0 | 99.4 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 953 | 1681 | - | pppA | 100.0 | 99.6 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 28397 | 28819 | + | pscB | 100.0 | 99.3 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 28819 | 30621 | + | pscC | 100.0 | 99.3 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 30623 | 31921 | + | pscD | 100.0 | 99.1 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 31884 | 32087 | + | pscE | 100.0 | 98.0 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 32090 | 32347 | + | pscF | 100.0 | 99.6 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 32350 | 32697 | + | pscG | 100.0 | 99.1 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 32694 | 33125 | + | pscH | 100.0 | 99.3 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 33125 | 33463 | + | pscI | 100.0 | 99.7 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 33460 | 34206 | + | pscJ | 100.0 | 99.5 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 34215 | 34835 | + | pscK | 99.0 | 97.8 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 34814 | 35458 | + | pscL | 100.0 | 98.8 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 15037 | 16359 | - | pscN | 100.0 | 99.5 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 14564 | 15040 | - | pscO | 100.0 | 99.4 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 13494 | 14576 | - | pscP | 96.8 | 94.8 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 12568 | 13497 | - | pscQ | 100.0 | 99.1 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 11918 | 12571 | - | pscR | 100.0 | 99.4 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 11649 | 11915 | - | pscS | 100.0 | 100.0 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 10864 | 11652 | - | pscT | 100.0 | 99.1 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_269 | 9818 | 10867 | - | pscU | 100.0 | 98.9 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| k141_197 | 2393 | 3331 | - | ptxR | 100.0 | 98.7 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_171 | 7727 | 8713 | - | pvcA | 100.0 | 99.4 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_171 | 6834 | 7709 | - | pvcB | 100.0 | 99.0 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_197 | 147 | 1649 | + | pvcC | 100.0 | 98.9 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_197 | 1642 | 2288 | + | pvcD | 99.8 | 97.8 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 5381 | 6701 | - | pvdA | 99.2 | 82.7 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 18661 | 19488 | - | pvdF | 100.0 | 82.2 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_287 | 22173 | 22937 | - | pvdG | 100.0 | 98.6 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_66 | 127539 | 128948 | + | pvdH | 100.0 | 99.2 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_287 | 9071 | 22099 | - | pvdL | 100.0 | 99.1 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 15058 | 16404 | + | pvdM | 99.8 | 95.6 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 16427 | 17710 | + | pvdN | 100.0 | 99.2 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 17739 | 18593 | + | pvdO | 100.0 | 98.1 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 13198 | 14844 | - | pvdP | 99.8 | 85.0 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_222 | 2970 | 5258 | - | pvdQ | 100.0 | 99.3 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| k141_287 | 23580 | 24143 | + | pvdS | 100.0 | 97.7 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 7314 | 8201 | + | rhlA | 100.0 | 99.7 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 8267 | 9547 | + | rhlB | 100.0 | 99.8 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| k141_273 | 584 | 1561 | - | rhlC | 100.0 | 98.9 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| k141_248 | 23432 | 24037 | - | rhlI | 100.0 | 98.7 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 1691 | 2371 | - | tagF/pppB | 100.0 | 98.8 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 5885 | 6799 | + | tagQ | 100.0 | 98.0 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 4111 | 5823 | + | tagR | 100.0 | 99.4 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 2919 | 4118 | + | tagS | 100.0 | 99.3 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_42 | 2200 | 2919 | + | tagT | 100.0 | 98.3 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_29 | 4973 | 6889 | + | toxA | 100.0 | 98.8 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| k141_85 | 66979 | 67443 | + | tse1 | 100.0 | 99.8 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_48 | 16019 | 16495 | - | tse2 | 100.0 | 98.7 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_210 | 815 | 2041 | - | tse3 | 100.0 | 99.2 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 21790 | 23721 | + | vgrG1a | 100.0 | 99.2 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| k141_193 | 26442 | 28667 | + | vgrG1b | 100.0 | 98.7 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 14078 | 15355 | - | waaA | 100.0 | 99.2 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 40043 | 41110 | - | waaC | 100.0 | 99.2 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 41107 | 42144 | - | waaF | 100.0 | 99.5 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 38925 | 40046 | - | waaG | 100.0 | 99.2 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_149 | 38122 | 38928 | - | waaP | 100.0 | 99.3 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| k141_6 | 40060 | 40932 | + | xcpA/pilD | 100.0 | 99.3 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 7929 | 8636 | + | xcpP | 100.0 | 99.7 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 8641 | 10617 | + | xcpQ | 100.0 | 99.0 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 6201 | 7709 | - | xcpR | 100.0 | 99.5 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 4984 | 6201 | - | xcpS | 100.0 | 99.3 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 4533 | 4979 | - | xcpT | 100.0 | 99.3 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 4008 | 4526 | - | xcpU | 100.0 | 98.5 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 3622 | 4011 | - | xcpV | 100.0 | 99.2 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 2921 | 3625 | - | xcpW | 98.7 | 98.3 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 1923 | 2924 | - | xcpX | 100.0 | 99.1 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 778 | 1926 | - | xcpY | 100.0 | 98.3 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| k141_239 | 252 | 776 | - | xcpZ | 100.0 | 99.2 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
Multi-Locus Sequence Typing (MLST)
| Symbol | Meaning |
|---|---|
| ~ | novel full length allele similar to match |
| ? | partial match to known allele |
| - | allele missing |
| Scheme | ST | 1 | 2 | 3 | 4 | 5 | 6 | 7 | |
|---|---|---|---|---|---|---|---|---|---|
| 120_pio | paeruginosa | 235 | acsA(38) | aroE(11) | guaA(3) | mutL(13) | nuoD(1) | ppsA(2) | trpE(4) |
| 123_pio | paeruginosa | 235 | acsA(38) | aroE(11) | guaA(3) | mutL(13) | nuoD(1) | ppsA(2) | trpE(4) |
| 129_pio | paeruginosa | 235 | acsA(38) | aroE(11) | guaA(3) | mutL(13) | nuoD(1) | ppsA(2) | trpE(4) |
| 15_pio | paeruginosa | 235 | acsA(38) | aroE(11) | guaA(3) | mutL(13) | nuoD(1) | ppsA(2) | trpE(4) |
| 159_pio | paeruginosa | 235 | acsA(38) | aroE(11) | guaA(3) | mutL(13) | nuoD(1) | ppsA(2) | trpE(4) |
| 165_pio | paeruginosa | 235 | acsA(38) | aroE(11) | guaA(3) | mutL(13) | nuoD(1) | ppsA(2) | trpE(4) |
| 166_pio | paeruginosa | 235 | acsA(38) | aroE(11) | guaA(3) | mutL(13) | nuoD(1) | ppsA(2) | trpE(4) |
| 168_pio | paeruginosa | 235 | acsA(38) | aroE(11) | guaA(3) | mutL(13) | nuoD(1) | ppsA(2) | trpE(4) |
Pangenome Analysis
Pangenome genes summary
| Genes | Description | Number |
|---|---|---|
| Core genes | (99% <= strains <= 100%) | 5891 |
| Soft core genes | (95% <= strains < 99%) | 0 |
| Shell genes | (15% <= strains < 95%) | 370 |
| Cloud genes | (0% <= strains < 15%) | 507 |
| Total genes | (0% <= strains <= 100%) | 6768 |
Schematic representation of genes presence (color) or absence (blank) between samples:
Pangenome tree based on presence/absence of accessory genes representation
Rectangular (phylogram)
Circular (phylogram)
Circular (cladogram)
WARNING: Core genome alignment tree was not generated during pangenome analysis. Please check.
Insertion sequence characterization
| Field | Description |
|---|---|
| Region | Numeric code given to insertion sequence (IS) |
| Orientation | The orientation of IS position: Either forward (F) or reverse (F) |
| X-cordinates | The left coordinate of the position |
| Y-coordinates | The right coordinate of the position |
| Gap | The distance between the x and y coordinates |
| CallType | Describes whether a position hit is novel (not in reference) or known (in the reference) |
| LeftGene | Locus tag ID of the gene closest to the left side of the IS position |
| LeftGeneDescription | Description of the gene feature from the left side of the IS position. By default this is the product position |
| RightGene | Locus tag ID of the gene closest to the right side of the IS position |
| RightGeneDescription | Description of the gene feature from the right side of the IS position. By default this is the product position |
Select the sample
pseudomonas.gbk
## Error in read.table("pseudomonas.gbk_inseq.txt", header = T, sep = "\t", : no lines available in input## Error in as.data.frame(iseq): objeto 'iseq' no encontrado## Error in cbind(iseq[, 1:10]): objeto 'iseq' no encontrado## Error in colnames(iseqdata) = c("Region", "Orientation", "X-coordinates", : objeto 'iseqdata' no encontrado## Error in eval(expr, envir, enclos): objeto 'iseqdata' no encontrado## Error in formattable(iseq, align = c("l", "c", "c", "c", "c", "c", "c", : objeto 'iseq' no encontradoCitations and Bibliography
If you have used rMAP, please cite:
Sserwadda, I., & Mboowa, G. (2021). rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data. Microbial genomics, 7(6), 10.1099/mgen.0.000583. https://doi.org/10.1099/mgen.0.000583
The philosophy of rMAP was built on the foundation of already pre-existing tools. As a token of gratitude to the authors of those numerous tools, please also cite:
- ABRicate, T. Seemann
- AmrfinderPlus, Feldgarden M. et al., 2019
- Any2fasta, T. Seemann
- Assembly-stats, Sanger Pathogens
- Biopython.convert, biopython.org
- Bwa, Li H. et al., 2009
- Bmge, Criscuolo et al., 2010
- Cairosvg, cairosvg.org
- Fasttree, M.N. Price et al., 2009
- Fastqc, Andrews S., 2010
- Freebayes, Garrison E. et al., 2012
- ISmapper, [Hawkey J. et al., 2015
- Iqtree, Nguyen L. et al., 2015
- Kleborate, Holt KE, 2020
- Mafft, Katoh K. et L., 2013
- Megahit, Li D. et al., 2015
- Mlst, T. Seemann
- Multiqc, Ewels P., 2016
- Nextflow, Tommaso et al., 2017
- Parallel, O. Tange, 2011
- Prodigal, Hyatt D. et al., 2010
- Prokka, T. Seemann, 2014
- Quast, A. Gurevich et al., 2013
- R-base, R Development Core
Team, 2008
- ggplot2, H. Wickham, 2009
- ggtree, G. Yu et al., 2016
- knitr, Y. Xie, 2015
- plotly, C. Sievert et al., 2017
- RColorBrewer, E. Neuwirth and R.C. Brewer, 2014
- reshape2, H. Wickham, 2007
- rmarkdown, J.J. Allaire, 2015
- treeio, L-G. Wang et al., 2019
- Roary, A.J. Page et al., 2015
- Samclip, T. Seemann
- Samtools, Li H. et al., 2009
- Shovill, T. Seemann, 2020
- Snippy, T. Seemann
- SnpEff, Cingolani P. et al., 2012
- Tormes, Quijada NM. et al., 2019
- Trimmomatic, A.M. Bolger et al., 2014
- Unicycler, Wick RR. et al., 2017
- Vt, VT